Typing tool
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Typing tool
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Complete norovirus genomes
| AY038600 | GII.4 Asia | |
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| GII.P4 US95 |
ORF1: 1..787
ORF2: 768..2387
ORF3: 2387..3193
LOCUS AY038600 3241 bp mRNA linear VRL 25-JUL-2016
DEFINITION Human calicivirus NLV/VA98387/1998 RNA polymerase mRNA, partial
cds; and capsid and minor structural protein mRNAs, complete cds.
ACCESSION AY038600
VERSION AY038600.3
KEYWORDS .
SOURCE Human calicivirus NLV/VA98387/1998
ORGANISM Human calicivirus NLV/VA98387/1998
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3241)
AUTHORS Jiang,X., Zhong,W.M., Farkas,T., Huang,P.W., Wilton,N., Barrett,E.,
Fulton,D., Morrow,R. and Matson,D.O.
TITLE Baculovirus expression and antigenic characterization of the capsid
proteins of three Norwalk-like viruses
JOURNAL Arch. Virol. 147 (1), 119-130 (2002)
PUBMED 11855626
REFERENCE 2 (bases 1 to 3241)
AUTHORS Jiang,X., Zhong,W.M., Farkas,T., Huang,P.W., Wilton,N., Barrett,E.,
Fulton,D., Morrow,R. and Matson,D.O.
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2001) Center for Pediatric Research, Eastern
Virginia Medical School and Children's Hospital of The King's
Daughters, 855 West Brambleton Avenue, Norfolk, VA 23510, USA
REFERENCE 3 (bases 1 to 3241)
AUTHORS Jiang,X., Zhong,W.M., Farkas,T., Huang,P.W., Wilton,N., Barrett,E.,
Fulton,D., Morrow,R. and Matson,D.O.
TITLE Direct Submission
JOURNAL Submitted (23-OCT-2001) Center for Pediatric Research, Eastern
Virginia Medical School and Children's Hospital of The King's
Daughters, 855 West Brambleton Avenue, Norfolk, VA 23510, USA
REMARK Sequence update by submitter
REFERENCE 4 (bases 1 to 3241)
AUTHORS Jiang,X., Zhong,W.M., Farkas,T., Huang,P.W., Wilton,N., Barrett,E.,
Fulton,D., Morrow,R. and Matson,D.O.
TITLE Direct Submission
JOURNAL Submitted (15-MAR-2011) Cincinnati Children's Hospital Medical
Center, 3333 Burnet Avenue, Cincinnati, OH 45229, USA
REMARK Sequence update by submitter
COMMENT On Mar 15, 2011 this sequence version replaced AY038600.2.
FEATURES Location/Qualifiers
source 1..3241
/organism="Human calicivirus NLV/VA98387/1998"
/mol_type="mRNA"
/strain="NLV/VA98387/1998"
/db_xref="taxon:165511"
CDS <1..787
/note="ORF1"
/codon_start=2
/product="RNA polymerase"
/protein_id="AAK84678.1"
/translation="QQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVVDVGDFKIS
INEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDI
KLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGPTFLRRTVTRDPAGWFGKLEQS
SILRQMYWTRGPNHEDPSDTMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELK
EGGMDFHVPRQEPMFRWMTFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 768..2387
/note="ORF2"
/codon_start=1
/product="capsid"
/protein_id="AAK84679.2"
/translation="MKMASNDASPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMSNSRFPIPLEKLYTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSAVNICTFRGDVTHIAGSHDYIMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTREDGSTRAHKATVSTGSVHFTPKLGSVQYTTDTNNDLQTGQNTKFTPVGVIQDG
NNHQNEPQQWVLPNYSGRTGHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDC
LLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGPHDLVI
PPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
CDS 2387..3193
/note="ORF3"
/codon_start=1
/product="minor structural protein"
/protein_id="AAK84680.2"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQGMMKVKQSVLLEGGFSETDATRGAIN
APMTKALDWSGTRYWAADARSTTYNAGRFSTPQLSGALPGRNDLRATVPARGSSSTLS
STPTATSVYSNQTVSTRLGSSAGSGTSVSSLPSTARTRSWVEDQNRNLPPFMRGALNT
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 acaacagaga gctgtgttgg cagcagccct agaaatcatg gtcaaattct cctcagaacc
61 acatttggct caggtggtcg cagaagatct tctttctcct agcgtggtgg atgtgggtga
121 cttcaaaata tcaatcaatg agggtctccc ctctggggtg ccctgcacct cccaatggaa
181 ctccatcgcc cactggcttc tcactctctg cgcgctctct gaagttacaa acttgtcccc
241 tgacatcata caggccaact ccctcttctc cttttatggt gatgatgaaa ttgttagtac
301 agatataaag ttggacccag agaaattgac agcaaaactc aaggaatacg ggctgaaacc
361 aacccgccct gacaaaactg aggggcccct tgttatttct gaagacttaa atggtccgac
421 cttcctgcgg agaactgtga cccgcgaccc agctggttgg tttggaaaat tggagcagag
481 ttcaatactc agacaaatgt actggactag gggtcccaac catgaagacc catctgacac
541 aatgattcca cactcccaaa gacccataca attgatgtcc ctactgggag aggccgcact
601 ccacggccca gcattctaca gcaaaattag caagttggtt attgcagagc taaaagaagg
661 tggcatggat tttcacgtgc ccagacaaga gccaatgttc agatggatga cattctcaga
721 cctgagcacg tgggagggcg atcgcaatct ggctcccagt tttgtgaatg aagatggcgt
781 cgaatgacgc cagcccatct gatgggtcca cagccaacct cgtcccagag gtcaacaatg
841 aggttatggc tttggagccc gttgttggtg ccgctattgc ggcacctgtg gcgggccaac
901 aaaacgtaat tgacccctgg attaggaata attttgtaca agcccctggt ggagagttta
961 cagtatcccc tagaaacgct ccaggtgaga tactatggag cgcgcccttg ggccctgatt
1021 tgaaccccta cctttctcat ttggccagaa tgtacaatgg ttatgcaggt ggttttgaag
1081 tgcaggtaat cctcgcgggg aacgcgttca ccgccgggaa agtcatattt gcagcagtcc
1141 caccaaattt tccaactgaa ggcttgagcc ccagccaggt tactatgttc ccccatataa
1201 tagtagatgt taggcaattg gaacctgtgt tgatcccctt acctgatgtt aggaataact
1261 tctatcatta caatcaatca aatgattcta ccattaaatt gatagcaatg ctgtatacac
1321 cacttagggc taataatgct ggggatgatg tcttcacagt ctcttgtcga gtcctcacga
1381 ggccatcccc cgattttgat ttcatattct tggtgccacc cacagttgaa tcaagaacta
1441 aaccattcac cgtcccgatc ttaactgttg aggaaatgtc caactcaaga ttccccattc
1501 ctttggaaaa gttgtacacg ggtcccagca gtgcttttgt tgtccaacca caaaatggca
1561 ggtgcacgac tgatggcgtg ctcttaggca ctacccagct gtctgctgtc aatatctgca
1621 ccttcagagg ggatgtcacc cacattgcag gcagtcatga ctatataatg aatttggctt
1681 ctcaaaattg gaacaattat gacccaacag aagaaatccc agcccctctg ggaactccag
1741 atttcgtggg aaagatccaa ggcatgctca cccaaaccac aagagaggat ggctcgaccc
1801 gcgcccacaa agctacagtg agcactggga gcgtccactt cactccaaag ttgggcagtg
1861 ttcaatacac cactgacaca aacaatgatc ttcaaactgg ccaaaacacg aaattcaccc
1921 cagtcggcgt catccaggat ggtaataacc accaaaatga accccagcaa tgggtactcc
1981 caaattactc aggtagaact ggtcataatg tgcacctagc tcctgccgtt gcccccactt
2041 tcccaggcga gcaacttctc ttctttaggt ccactatgcc cgggtgtagc gggtatccca
2101 acatgaatct ggattgccta ctcccccagg aatgggtgca gcacttctac caagaagcag
2161 ctccagcaca atctgatgtg gctctgctga gatttgtgaa tccagacaca ggtagggttc
2221 tgtttgagtg caagctccat aaatcaggct atgtcacagt ggctcacact ggcccgcatg
2281 atttggttat cccccccaat ggttatttta gatttgattc ctgggtcaac cagttctaca
2341 cacttgcccc catgggaaat ggagcggggc gcagacgtgc attataatgg ctggagcttt
2401 ctttgctgga ttggcatctg atgtccttgg ttctggactt ggttccctaa tcaatgctgg
2461 agctggggcc atcaaccaaa aagttgagtt tgaaaacaac agaaaattgc aacaagcttc
2521 cttccaattt agtagcaatc tgcaacaggc ttccttccaa catgataagg agatgctcca
2581 agcacaaatt gaggccacta agaaattgca acagggtatg atgaaggtta aacagagcgt
2641 gctcctagag ggtggattct ctgaaacaga tgccacccgt ggggcaatca acgcccccat
2701 gacaaaggct ctggactgga gcgggacaag gtactgggct gctgatgcca ggtccacaac
2761 atacaatgca ggccgctttt ctacccctca actttcgggg gcattgccag gaagaaatga
2821 tcttagggct actgtccccg ctcggggctc ctctagtaca ctttctagta ctcccactgc
2881 tacttctgtg tattcaaatc aaactgtttc aacgagactt ggttcttcag ctggttctgg
2941 caccagtgtc tcgagtctcc cgtcaactgc aaggactagg agctgggttg aggatcaaaa
3001 tagaaatttg ccacctttca tgaggggggc tctcaacaca tcattcgtca ccccaccatc
3061 tagtagatcc tctagccaag gcacagtctc aaccgtgcct aaagaaattt tggactcctg
3121 gactggcgct ttcaacacgc gcaggcagcc tctcttcgct cacattcgca agcgagggga
3181 gtcacgggtg taatgtgaaa agacaaaatt gattatcttt cctttccttt agtgtctctt
3241 c
//