Typing tool
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Typing tool
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Complete norovirus genomes
| AY038599 | GII.9 | |
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| GII.P7 |
ORF1: 1..872
ORF2: 853..2466
ORF3: 2466..3239
LOCUS AY038599 3290 bp mRNA linear VRL 25-JUL-2016
DEFINITION Human calicivirus NLV/VA97207/1997 RNA polymerase mRNA, partial
cds; and capsid and minor structural protein mRNAs, complete cds.
ACCESSION AY038599
VERSION AY038599.2
KEYWORDS .
SOURCE Human calicivirus NLV/VA97207/1997
ORGANISM Human calicivirus NLV/VA97207/1997
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3290)
AUTHORS Jiang,X., Zhong,W.M., Farkas,T., Huang,P.W., Wilton,N., Barrett,E.,
Fulton,D., Morrow,R. and Matson,D.O.
TITLE Baculovirus expression and antigenic characterization of the capsid
proteins of three Norwalk-like viruses
JOURNAL Arch. Virol. 147 (1), 119-130 (2002)
PUBMED 11855626
REFERENCE 2 (bases 1 to 3290)
AUTHORS Jiang,X., Zhong,W.M., Farkas,T., Huang,P.W., Wilton,N., Barrett,E.,
Fulton,D., Morrow,R. and Matson,D.O.
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2001) Center for Pediatric Research, Eastern
Virginia Medical School and Children's Hospital of The King's
Daughters, 855 West Brambleton Avenue, Norfolk, VA 23510, USA
REFERENCE 3 (bases 1 to 3290)
AUTHORS Jiang,X., Zhong,W.M., Farkas,T., Huang,P.W., Wilton,N., Barrett,E.,
Fulton,D., Morrow,R. and Matson,D.O.
TITLE Direct Submission
JOURNAL Submitted (15-MAR-2011) Cincinnati Children's Hospital Medical
Center, 3333 Burnet Avenue, Cincinnati, OH 45229, USA
REMARK Sequence update by submitter
COMMENT On Mar 15, 2011 this sequence version replaced AY038599.1.
FEATURES Location/Qualifiers
source 1..3290
/organism="Human calicivirus NLV/VA97207/1997"
/mol_type="mRNA"
/strain="NLV/VA97207/1997"
/db_xref="taxon:165510"
CDS <1..872
/note="ORF1"
/codon_start=3
/product="RNA polymerase"
/protein_id="AAK84675.1"
/translation="NEDGPIIFDKHSKYRYHYDADYSRWDSTQQRSVLSAAMEVMVRF
SAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQWNSIAHWILTLSAMAE
VSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREYGLVPTRPDKTEGPLVI
TEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLIWTRGPNHENPYESMVPHSQRATQ
LMALLGEASLHGPQFYKKVSKMVINEIKSGGLAFYVPRQEAMFRWMRFSDLSTWEGDR
NLAPEGVNEDGVE"
CDS 853..2466
/note="ORF2"
/codon_start=1
/product="capsid"
/protein_id="AAK84676.2"
/translation="MKMASNDAAPSSDGAAGVVPEINHEVMAIEPVAGASIAAPVVGQ
QNIIDPWIRNNFVQAPAGEFTVSPRNAPGEFLLDLELGPDLNPYLAHLARMYNGHAGG
MEVQIVLAGNAFTAGKILFAVIPPGFPYENLCPAQLTMCPHVVVDVRQLEPVMLPMPD
IRNTFFHYNQDGGPKLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPAPDFEFTFLVPP
SIESKTKAFTIPVLKISEMTNSRFPVPVDQMYTSRSEGIVVQPQNGRATIDGELLGTT
LVSPVSVCNFKGNLQAEVPGQHQLYQLQLTNLDGSPIDPTDDTPGPLGCPDFTGLLYG
VASQRGPGDATRAHEARIDTGSDTFAPKIGQVRFYSTSSDFETNQPTHFTPIGIYIEG
NSSDFNQWQLPRYGGHLANNNHLAPAVSPLFPGEQILFFRSFIPGASGHTNGEMDCLL
PQEFVQHFYQEAATARSEVALLRFVNPDTGRALFESKLHKQGFMTIASSGDHPIIMPT
NGYFRFEAWVNQFYSLAPVGTGSGRRRIQ"
CDS 2466..3239
/note="ORF3"
/codon_start=1
/product="minor structural protein"
/protein_id="AAK84677.1"
/translation="MAGAFIAGLSGDVLSSSVGSLVNAGANAINQNVEYNFNRQLQEA
SFRHDKEMLNAQIAATTQLQRDIMAIKQGVLSAGGFSPTDAARGSIGAPMTKILDWNG
SRYWAPNSTRTTGYSGTFTSQGVRQVFQPVQSIPNPSTLKNSPKAPSSVSSFNTQSTQ
STKLSNSTAGVSSSRSSRTTRLLSRTSEWVRGQNERLSPFMSGALQTTFVTPPYSKSS
SVGTVSTVPKEVLDSWTPVFNTRRQPLFAHIRRRGESQT"
ORIGIN
1 tgaatgaaga tggccccatc atatttgaca aacactctaa gtataggtac cactatgatg
61 ctgactattc taggtgggat tcaactcagc aaaggagtgt tctctcggcc gctatggaag
121 tgatggtgcg gttttctgcc gaaccagaac tggcacaagt ggtcgcagag gaccttctgg
181 cacccagcca actagatgtt ggcgattttg tcatctcagt ccaggagggt ctgccatcag
241 gagtcccatg cacatcacaa tggaattcaa tagcacactg gatcctaaca ttgagtgcaa
301 tggcagaagt gtcaggcctc tcaccagatg ttgtccaagc ccactcctgt ttttcattct
361 acggcgatga tgagatcgtt agcactgata tcaaccttga ccccatgaag ttaacacaga
421 aactcaggga gtacggtctg gtccccaccc gacctgacaa gactgaaggt cccctcgtaa
481 taactgagga cctcaccggc ctaacgttcc tgcgtaggtc gatcgcgcgg gacccagctg
541 ggtggtttgg aaaattggac caagactcaa tcctcaggca gcttatctgg acaagggggc
601 ccaatcatga gaatccatac gagagcatgg tccctcattc tcagcgggcc acacagctca
661 tggcccttct tggtgaggct tcactgcatg gtccccagtt ttataagaaa gttagcaaga
721 tggtcatcaa tgagattaag agtggtggtc tggcgtttta tgtgcccaga caagaggcca
781 tgtttaggtg gatgagattc tctgacctca gcacatggga gggcgatcgc aatcttgctc
841 ccgagggtgt gaatgaagat ggcgtcgaat gacgcagctc catcgagtga tggcgcagcg
901 ggcgtcgtcc cagagatcaa tcatgaggtt atggcaattg aacctgttgc aggtgcatca
961 atcgctgccc ctgtggtagg acaacaaaat attattgatc cctggataag aaataatttt
1021 gtacaagcac ccgctggaga attcactgtt tcccctagga atgccccggg tgagttcttg
1081 ctcgatttag aattgggccc tgatctgaac ccctatctgg cacatttggc aagaatgtac
1141 aacggtcatg cgggtggtat ggaagtgcag atagtactag ctgggaatgc gttcacagct
1201 ggtaaaatcc tatttgctgt cataccgcct gggtttccgt atgaaaattt gtgcccagca
1261 caactcacga tgtgccctca cgtcgtagtt gatgtgaggc agcttgagcc tgtcatgctg
1321 cccatgccag atatcaggaa tacattcttt cattataatc aagatggtgg accaaaattg
1381 aggttaattg ccatgttgta tacccctctc agagctaata attcaggtga tgatgtattt
1441 actgtttcct gtagagtcct aacgagacct gcccctgatt ttgaattcac atttttagtc
1501 cctccctcta ttgagtcaaa gactaaggca ttcactatcc cagtgcttaa aatttctgaa
1561 atgacaaatt caagattccc tgtaccagtt gaccaaatgt acaccagcag gagcgagggg
1621 atcgtggtcc aacctcaaaa cggtagggcc accattgacg gagagctact cggcaccact
1681 ctcgtctccc cagtttctgt gtgcaatttc aagggaaacc tacaagctga agtcccaggg
1741 caacaccaac tctaccaact acagttgact aaccttgatg gctcacctat tgaccccact
1801 gatgatacac ctgggccact aggttgccca gacttcactg gcctcctcta cggagtcgcc
1861 agccagcgtg gtccaggtga cgccacgcgg gcccatgagg caaggattga caccggcagt
1921 gacacttttg cccccaaaat tggacaagtc aggttctact caacctcaag cgattttgaa
1981 acaaaccaac ccacacattt caccccaata ggtatctaca ttgagggcaa ttcttctgat
2041 tttaatcaat ggcaactccc caggtatggt ggtcacctag ctaacaacaa ccatctggca
2101 cctgcagtct cgcctctatt ccctggagag caaatccttt tcttcagatc tttcatccca
2161 ggagctagtg gccacacaaa tggggagatg gattgcctcc tgcctcagga gtttgtgcag
2221 cacttctacc aagaagcggc aactgcgcgg tcggaggtgg ccttactgag gtttgtcaac
2281 cctgacactg gaagggcttt gtttgaatcc aaactccaca agcaaggttt catgacaatt
2341 gcaagttcag gtgaccatcc tattattatg ccaaccaatg gttatttcag atttgaagct
2401 tgggttaacc aattttattc tctcgcccct gtgggaactg gaagtgggcg cagaaggatc
2461 caataatggc tggagctttt atagcaggat tgtctgggga cgtcttgtcc tcaagcgttg
2521 gttcgctggt caacgcgggc gcaaacgcta ttaaccaaaa tgttgagtac aattttaaca
2581 gacagcttca ggaggcatct tttagacatg ataaggaaat gctcaatgcc cagattgctg
2641 cgacaacgca gctgcaaaga gacataatgg caataaagca gggggttttg tccgctggcg
2701 gcttttcccc cactgatgcc gcaagaggtt caattggggc cccaatgacc aaaattttag
2761 attggaatgg atcaagatat tgggctccaa actcaacgag gactacaggc tattctggca
2821 cattcacttc ccagggtgtt aggcaagtgt tccaacctgt tcaaagtatc cccaacccaa
2881 gcactttgaa aaattctcct aaggctcctt cttcagtgag ttcttttaat acccaatcta
2941 cccaatcaac aaagttgagt aattccacag caggagtttc ctcatcccgc tcatccagaa
3001 ccaccaggct gctttctaga actagtgagt gggtgagagg gcaaaatgaa agacttagtc
3061 ctttcatgag tggcgcacta caaacaacgt tcgtgacgcc accatacagc aagtcttctt
3121 ctgtggggac agtctcaacc gtccccaagg aggttttgga ctcctggacg cctgttttta
3181 acacacgcag gcagccactc ttcgcccaca tccgtaggcg aggggagtca cagacttagt
3241 gaaaagagtg atctgaattt gattctttgt cttattctct tctttctttt
//