Typing tool
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Typing tool
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Complete norovirus genomes
| AY038598 | GI.3 | |
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| GI.P3 |
ORF1: 1..784
ORF2: 768..2405
ORF3: 2405..3052
LOCUS AY038598 3176 bp mRNA linear VRL 23-JUL-2016
DEFINITION Human calicivirus NLV/VA98115/1998 RNA polymerase mRNA, partial
cds; and capsid and minor structural protein mRNAs, complete cds.
ACCESSION AY038598
VERSION AY038598.1
KEYWORDS .
SOURCE Human calicivirus NLV/VA98115/1998
ORGANISM Human calicivirus NLV/VA98115/1998
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3176)
AUTHORS Jiang,X., Zhong,W.M., Farkas,T., Huang,P.W., Wilton,N., Barrett,E.,
Fulton,D., Morrow,R. and Matson,D.O.
TITLE Baculovirus expression and antigenic characterization of the capsid
proteins of three Norwalk-like viruses
JOURNAL Arch. Virol. 147 (1), 119-130 (2002)
PUBMED 11855626
REFERENCE 2 (bases 1 to 3176)
AUTHORS Jiang,X., Zhong,W.M., Farkas,T., Huang,P.W., Wilton,N., Barrett,E.,
Fulton,D., Morrow,R. and Matson,D.O.
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2001) Center for Pediatric Research, Eastern
Virginia Medical School and Children's Hospital of The King's
Daughters, 855 West Brambleton Avenue, Norfolk, VA 23510, USA
FEATURES Location/Qualifiers
source 1..3176
/organism="Human calicivirus NLV/VA98115/1998"
/mol_type="mRNA"
/strain="NLV/VA98115/1998"
/db_xref="taxon:165509"
CDS <1..784
/note="ORF1"
/codon_start=2
/product="RNA polymerase"
/protein_id="AAK84672.1"
/translation="QNREIMMESFNIMCKLTANPSLAAVVAQDLLSPSEMDVGDYVIS
VKDGLPSGFPCTSQVNSINHWILTLCALSEVTGLSPDVIQSQSYFSFYGDDEIVSTDI
EFDPIRLTQILKEYGLKPTRPDKTDGPIIVRQQVDGLVFLRRTISKDAIGYQGRLDRN
SIERQLWWTRGPNHDDPFETLVPHSQRKIQLISLLGEAALHGEKFYRKIAGRVIQEVK
EGGLEIYIPGWQAMFRWMRFHDLSSWTGDRDLLPDYVNDDGV"
CDS 768..2405
/note="ORF2"
/codon_start=1
/product="capsid"
/protein_id="AAK84673.1"
/translation="MMMASKDAPPNMDGTSGAGQLVPEANTAEPISMEPVAGAATAAA
TAGQVNMIDPWIMDNYVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLSHLAQMYNG
WVGNMKVKVLLAGNAFTAGKIIISCIPPGFAAQNISIAQATMFPHVIADVRVLDPIEV
PLEDVGNVLFHNNGDTPTMRLVCMLYTPLRASGSSSGTDPFVIAGHVLTCPSPDFSFL
FLGPPNVEQKTKPFSVPNLPLNTLSNSRVPSLIRSMMVSRDHGQMVQFQNGRVTLDGQ
LQGTTPTSASQLCKIRGSVFHANGGNGYTLTELDGSPYHAFESPAPIGFPDLGECDWH
MEASPTTQFDTGDVIKQINVKQEAAFAPHLGTIQADGLSDVSVNTNMIAKLGWVSPAS
DGHRGNVDPWVIPRYGSTLTEAAQLAPPIYPPGFGEAIVFFMSDFPIAHGANGLSVPC
TIPQEFVTHFVNEQAPTRGEAALLHYLDPDTHRNLGEFKLYPEGFMTCVPNSSGTGPQ
TLPINGVFVFVSWVSRFYQLKPVGTAGPARSLGIRRS"
CDS 2405..3052
/note="ORF3"
/codon_start=1
/product="minor structural protein"
/protein_id="AAK84674.1"
/translation="MAQAVLGAIAATAAGSAVGAGIQAGTEAALQHQRFQQDLTLQKN
SFIHDKEMMGLQIEASTALLQNSLGTRYNMLTKAGMTSADAARMVVGAPTTRVIDWNG
TRVAAPMSTATTLRSGGFMTVPTVYRGGKNKQSTGGGFSNVNYDPSVSSSRTSQWVSS
QNSMRSTLEPFHPGALRTTWVTPPGSTSTSTISTVSTVPKFFNTERLPLFANRGK"
ORIGIN
1 acaaaacagg gagatcatga tggaatcttt caacattatg tgcaagctca cagccaaccc
61 atccctggcc gcagtagtgg cacaggatct actctcccca tctgagatgg acgttggcga
121 ttatgtgatc agtgttaagg atggtctacc atctggcttt ccatgcactt cacaggtgaa
181 tagcatcaac cactggatcc taactctgtg tgcactgtca gaagtcactg gcttgtcccc
241 tgatgtgata caatcacaat cttatttctc attttatggt gatgatgaaa tagtctcaac
301 agacatagaa tttgacccaa tcagattgac acaaatactg aaggagtatg gtttgaagcc
361 cacaagacct gataaaactg atggcccaat tattgtcaga caacaggtgg atggtctggt
421 tttcctccgg cgcaccatct ctaaggacgc cattggatac cagggacgac tcgaccgcaa
481 ctccattgaa agacagcttt ggtggactcg cgggccaaac catgatgacc catttgagac
541 gctagtccca cattcacaga gaaagatcca attgatatcc ctgctgggtg aagcagcact
601 ccatggcgaa aaattctaca gaaagatagc tggtagggtt attcaagaag tcaaggaagg
661 ggggcttgaa atctacatcc ctggttggca ggccatgttc cgctggatgc gattccatga
721 tttgagttcg tggacaggag accgcgatct cctgcccgat tatgtaaatg atgatggcgt
781 ctaaggacgc cccaccaaac atggatggca ccagtggtgc cggccagctg gtaccagagg
841 caaatacagc tgagcctata tcaatggagc ctgtggctgg ggcagcaaca gctgccgcga
901 ccgctggcca agttaatatg attgacccct ggataatgga taattatgtg caagcccctc
961 aaggtgaatt cactatatcg cccaataaca caccaggtga tattttgttt gatctacaat
1021 taggccccca tctcaatcct ttcttatccc atttggccca aatgtataat ggttgggttg
1081 gcaatatgaa agtgaaggtc ctattggctg gtaatgcctt cacggctggc aaaataatta
1141 ttagttgcat accccctggc tttgcggcac aaaacatctc cattgctcaa gctacaatgt
1201 ttccccacgt tatagctgat gttagggttc tagaccccat tgaagtgcca ctggaagatg
1261 tgggaaatgt gctgttccat aacaatggcg acacaccaac catgaggttg gtgtgcatgc
1321 tctacacccc cttgcgagcc agtggcagct cgtctggaac tgaccctttt gtgattgctg
1381 ggcatgtctt gacatgccca agccctgatt ttagcttttt attcttgggc ccccccaatg
1441 tagaacaaaa gactaaacca tttagtgtcc caaatcttcc attgaatacc ctttcaaatt
1501 caagagtccc ttctctaatt aggtcaatga tggtgtccag agaccatggg cagatggttc
1561 agtttcaaaa tggtagggtc accctagatg ggcagctgca aggcaccacg cccacatcag
1621 ctagccaact gtgcaaaatc agaggcagtg tcttccacgc caatggtggg aatgggtata
1681 ccctaactga actggatggg agcccatacc atgcatttga gagccctgcg ccaatagggt
1741 ttccagattt gggtgagtgt gattggcaca tggaggcatc ccctaccacc caattcgata
1801 ctggtgatgt tataaagcaa attaatgtca aacaagaagc agcatttgct ccccaccttg
1861 gtactataca agcagacggc ctgagtgatg tgagtgtcaa cactaacatg atagctaaat
1921 taggatgggt gtcacccgcc agtgatggac atagaggaaa tgtcgatccg tgggtcattc
1981 cacgatacgg gtcgactttg actgaggccg cccaactagc ccctccaata tatcccccag
2041 gttttggtga ggccattgtg tttttcatgt cagatttccc tattgcccat ggtgccaatg
2101 gcttgagtgt gccttgcacc ataccccaag agtttgtcac tcattttgtc aatgaacagg
2161 cccctactag aggggaagca gccctactgc attatttaga tcctgacacc catagaaatc
2221 taggtgagtt caaattatat cctgagggct tcatgacgtg tgtgcctaat tccagtggca
2281 ctggtccaca aaccctccca atcaatggtg tttttgtttt tgtgtcctgg gtttccagat
2341 tctatcagtt aaagcctgtg ggaacagccg gcccggctcg tagccttggg attaggagat
2401 cataatggcc caagctgtac ttggagctat agcagcaacg gcagctggca gcgctgttgg
2461 tgctggtata caagctggaa ccgaagctgc cctacaacac cagaggttcc agcaagattt
2521 gaccctacaa aagaactcct tcattcatga caaagagatg atgggcctgc agattgaggc
2581 ttcaactgca ctcctccaaa acagtttggg cacacggtac aacatgttga ccaaagcagg
2641 gatgacatcc gcagatgcgg cacgcatggt tgtgggggcg cctacaacgc gtgtcattga
2701 ttggaatggg actagggtcg ccgcgcccat gtcaaccgca acgacactta ggtctggtgg
2761 tttcatgacc gtgccaactg tttatagggg tggtaagaat aaacaatcaa ctggtggtgg
2821 tttttctaat gtaaattatg atccctcagt ttcctcttcc cggacttctc agtgggtttc
2881 ttcacaaaat tcaatgcgtt ccactttgga accattccat ccaggtgccc tgagaaccac
2941 atgggtcact ccacctgggt caacttctac ttctacaatt tccacagttt ctactgtgcc
3001 aaaattcttt aatacagaaa gattaccctt attcgcgaac aggggtaaat gatttttgta
3061 atatgaatta gtgggcatca tattcaattt ggaatcaatt agatattgta atatgaattg
3121 gcaggtatca tattcaattt ggaatcaatt agatatttag attggcagat gatgtt
//