Typing tool
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Typing tool
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Complete norovirus genomes
| AY032605 | GII.4 Sydney | |
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| GII.P12 |
ORF1: 5..5104
ORF2: 5085..6704
ORF3: 6704..7510
LOCUS AY032605 7556 bp ss-RNA linear VRL 29-JAN-2002
DEFINITION Human calicivirus Hu/NLV/GII/MD145-12/1987/US, complete genome.
ACCESSION AY032605
VERSION AY032605.1
KEYWORDS .
SOURCE Human calicivirus Hu/NLV/GII/MD145-12/1987/US
ORGANISM Human calicivirus Hu/NLV/GII/MD145-12/1987/US
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7556)
AUTHORS Green,K.Y., Belliot,G., Taylor,J.L., Valdesuso,J., Lew,J.F.,
Kapikian,A.Z. and Lin,F.Y.
TITLE A predominant role for Norwalk-like viruses as agents of epidemic
gastroenteritis in Maryland nursing homes for the elderly
JOURNAL J. Infect. Dis. 185 (2), 133-146 (2002)
PUBMED 11807686
REFERENCE 2 (bases 1 to 7556)
AUTHORS Belliot,G.M. and Green,K.Y.
TITLE Direct Submission
JOURNAL Submitted (13-APR-2001) NIAID/LID/Epidemiology, NIH, 9000 Rockville
Pike, Bethesda, MD 20892, USA
FEATURES Location/Qualifiers
source 1..7556
/organism="Human calicivirus Hu/NLV/GII/MD145-12/1987/US"
/mol_type="genomic RNA"
/db_xref="taxon:158465"
CDS 5..5104
/codon_start=1
/product="non-structural polyprotein"
/protein_id="AAK50354.1"
/translation="MKMASNDASAAAVANSNNDTAKSSSDGVLSSMAITFKRALGARP
KQPPPREILQRPPRPPTPELVKKIPPPPPNGEDELVVSYSVKDGVSGLPELSTVRQPD
EANTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELTPLSLFWRPVYTPQYLISPDTLKRLHGESFPYTAFDNNCYAFCCWVLDLNDS
WLSRRTIQRTTGFFRPYQDWNRKPLPTVDDSKLKKVANLFLCALSSLFTRPIKDIIGK
LRPLNILNILASCDWTFAGIVESLILMAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTSLLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL
AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPEVEK
AKRDFPGQPDMWKNAFSPDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEYELQGPTLTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVRTM
PELKQALKNISIKRCQIVYSGCTYTLESDGKGSVKVDRVQSATVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEETINKDGC
PKPKDDEEFVVSSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNERLSFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAQEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMVLGTTPGD
CGCPYIYKRENDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILG
PGSAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPQKWSFTQACASLDKTTSSGHPHHIRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFKISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLTISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5085..6704
/note="major structural protein"
/codon_start=1
/product="capsid protein"
/protein_id="AAK50355.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNIIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLSRMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSHDSTLKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMSNSRFPIPLEKLYTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSAVNICNFRGDVTHIVGSHDYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGLL
TQTTRADGSTRAHKATVSTGSVHFTPKLGSVQFTTDTNNDFQTGQNTKFTPVGVIQDG
DHHQNEPQQWVLPNYSGRTGHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDC
LLPQEWVLHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYITVAHTGPYDLVI
PPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6704..7510
/note="minor structural protein"
/codon_start=1
/product="ORF3 protein"
/protein_id="AAK50356.1"
/translation="MAGSFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATQKLQQDLMKVKQAVLLEGGFSTTDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTLQPSGALPGRTNPRITVPARGPPSTLS
NASTATSVYSNQTVSTRLGSSAGSGTGVSSLPSTARTRNWVEDQNRNLSPFMRGALNT
SFVTPPSSRSSNQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gttgccaaca gcaacaacga
61 caccgcaaaa tcttcaagtg acggagtgct ttctagcatg gctatcactt ttaaacgagc
121 cctcggggcg cggcctaaac agcctccccc gagggaaata ctacaaagac ccccacgacc
181 acctacccca gaactggtca aaaagatccc ccctcccccg cccaacgggg aggatgaact
241 agtggtttct tatagtgtca aagatggcgt ttccggtctg cctgagcttt ccactgtcag
301 gcaaccggat gaagccaata cggccttcag tgttccccca ctcaatcaga gggagaatag
361 ggatgccaag gagccactaa ctggaacaat tctggaaatg tgggatggag agatctacca
421 ttacggccta tatgtggagc gaggtcttgt acttggtgtg cacaaaccac cagctgccat
481 cagcctcgcc aaggtcgaac taacaccact ctccttgttc tggagacctg tatacactcc
541 ccagtatctc atctccccag acactctcaa gagattgcac ggagaatcgt tcccctatac
601 agccttcgac aacaattgct atgccttctg ttgctgggtc ttagacctaa acgactcgtg
661 gctgagtagg agaacgatcc agagaacaac tggtttcttt agaccctatc aagactggaa
721 taggaaaccc ctccctactg tggatgactc caaattaaag aaggtagcta acttattcct
781 gtgtgctcta tcttcactat tcaccaggcc catcaaagac ataataggga aactaagacc
841 tctcaacatc ctcaacatct tggcctcatg tgattggact ttcgcaggca tagtggaatc
901 cttgatactc atggcagagc tctttggagt tttctggacg cccccagatg tgtctgcgat
961 gattgccccc ttgctaggtg attacgagtt acaagggcct gaggaccttg cagtggaact
1021 cgttcctata gtgatggggg gaattggttt ggtgctagga tttaccaaag agaagattgg
1081 gaagatgttg tcatctgctg catccacctt aagagcttgt aaagatcttg gtgcatacgg
1141 gctggaaatc ctaaaattag tcatgaagtg gttcttccca aagaaagagg aagcaaatga
1201 gctggctatg gtgagatcca tcgaggatgc ggtgctggac ctcgaggcaa ttgaaaacaa
1261 ccatatgacc agcctgctca aagacaaaga cagtctggca acctacatga gaacccttga
1321 ccttgaggag gagaaagcca ggaagctctc aaccaagtct gcttcacctg atatcgtggg
1381 tacaatcaac gcccttctgg caagaatcgc tgctgcacgt tccctggtgc atcgagcgaa
1441 ggaggagctt tccagcagac caagacccgt tgtcgtgatg atatcaggca gaccagggat
1501 agggaagacc caccttgcca gggaactggc caagagaatc gcagcctccc tcacaggaga
1561 ccagcgtgta ggtctcatcc cacgcaatgg cgtcgaccac tgggacgcat acaaggggga
1621 gagggtcgtc ctatgggacg actatggaat gagtaatccc atccatgatg ccctcaggtt
1681 acaagaactc gctgacactt gccccctcac tctaaactgt gacaggattg agaacaaagg
1741 aaaggtcttt gacagtgatg ccataatcat caccactaat ctggccaacc cagcaccact
1801 ggactacgtc aactttgagg catgctcgag gcgcatcgat ttcctcgtgt atgcagatgc
1861 ccctgaagtc gagaaggcga aacgtgattt tccaggccaa cctgacatgt ggaagaacgc
1921 tttcagtcct gatttctcgc acataaaact aacgctggct ccacagggtg gcttcgacaa
1981 gaatggaaac accccacatg ggaagggcgt catgaagact ctcaccactg gctccctcat
2041 tgcccgggca tcagggctac tccatgagag gttagatgag tatgagctac agggcccaac
2101 tctcaccact ttcaactttg atcgcaacaa ggtgcttgct tttaggcagc ttgctgctga
2161 aaacaaatac gggctgatgg acacaatgaa agttggaaga cagctcaagg atgtcagaac
2221 catgccagag cttaaacaag cactcaagaa tatctcaatc aagaggtgcc agatagtgta
2281 cagtggttgc acctatacac ttgagtctga tggcaagggc agtgtgaaag ttgacagagt
2341 tcagagcgcc accgtgcaga ccaataacga gctggccggc gccctacacc atctaaggtg
2401 cgccagaatt aggtactatg tcaagtgtgt ccaggaggcc ctatattcca tcatccaaat
2461 tgctggagct gcatttgtca ccacgcgcat cgtcaagcgc atgaacatac aagacctctg
2521 gtccaagcca caagtggaag acacagagga gactatcaac aaggacgggt gcccaaaacc
2581 caaagatgat gaggagttcg tcgtctcatc tgacgacatc aaaactgagg gcaagaaagg
2641 gaagaacaag actggccgtg gcaagaagca cacagccttc tcaagcaaag gtctcagtga
2701 tgaagagtac gatgagtaca agagaatcag agaagaaaga aacggcaagt actccataga
2761 agagtacctt caggacaggg acaagtacta tgaggaggtg gccattgcca gggcgaccga
2821 agaggacttc tgtgaagagg aggaggccaa gattcggcag aggattttca ggccaacaag
2881 gaaacaacgc aaggaggaga gggcctctct cggtttagtc acaggctctg aaatcaggaa
2941 gaggaaccca gatgatttca agcccaaggg aaaactgtgg gctgatgatg acaggagtgt
3001 agactacaat gagagactca gttttgaggc cccaccaagc atctggtcga ggatagtcaa
3061 ctttggttca ggttggggct tctgggtttc tcccagcctg ttcataacat caactcatgt
3121 cataccccag ggcgcacagg agttctttgg agtccccatc aagcaaattc agatacacaa
3181 atcgggcgaa ttctgtcgct tgaggttccc aaaaccaatc aggactgatg tgacgggcat
3241 gatcttagaa gaaggtgcgc ccgaaggtac cgtggccacc ctactcatca agaggcctac
3301 tggagaactt atgcccttag cagccagaat ggggacccat gcaaccatga aaattcaagg
3361 gcgcactgtt ggaggtcaaa tgggcatgct tctgacagga tccaacgcca aaagcatggt
3421 tctaggcacc acaccaggtg actgcggctg cccctacatc tacaagaggg agaatgacta
3481 cgtggttatt ggagtccaca cggctgccgc tcgtgggggg aacactgtca tatgtgccac
3541 ccaggggagt gagggagagg ctacacttga aggcggtgac agtaagggaa cctactgtgg
3601 tgcaccaatc ctaggcccag gaagtgcccc aaaactcagc accaagacta aattctggag
3661 atcatctaca acaccactcc cacctggcac ctatgaacca gcctaccttg gtggtaagga
3721 ccccagagtc aagggtggcc cttcattgca acaagtcatg agggatcagc tgaaaccatt
3781 tacagagccc aggggcaaac caccaaagcc aagtgtgttg gaggctgcca agaaaaccat
3841 catcaatgtc cttgaacaaa caattgatcc acctcagaag tggtcattca cgcaagcttg
3901 cgcgtccctc gacaagacta cttccagtgg ccatccgcac cacatacgga aaaacgactg
3961 ctggaacggg gaatccttca caggcaagtt ggcagaccag gcttccaagg ccaacctgat
4021 gttcgaagag gggaagaaca tgaccccggt ctacacaggt gcgcttaagg atgagttggt
4081 caaaactgac aaaatttatg gtaagatcaa gaagaggctt ctctggggct cggacttagc
4141 gaccatgatc cggtgcgctc gggcattcgg aggcctaatg gatgaactca aagcacactg
4201 tgttacactt cctgtcagag ttggtatgaa tatgaatgag gatggcccca tcatcttcga
4261 gaggcattcc aggtataaat atcactatga tgctgattac tctcggtggg attcaacgca
4321 acagagagcc gtattagcag cagccctaga aatcatggtt aaattctccc cagaaccaca
4381 tctggcccag atagttgcag aagaccttct ctctcctagt gtgatggatg tgggtgactt
4441 caaaatatca atcaatgagg gtctcccctc tggggtgccc tgcacctccc aatggaattc
4501 catcgcccac tggctcctca ctctctgtgc actctctgaa gtcacaaacc tgtcccctga
4561 tatcatacag gctaattccc tcttctcctt ttatggcgat gatgaaattg tcagtacaga
4621 tataaagttg gacccagaga aattgacagc aaaactcaag gaatacgggt tgaaaccaac
4681 ccgccctgac aaaactgaag gaccccttac tatctctgaa gacttgaatg gtctgacctt
4741 cctgcggaga actgtgaccc gcgacccagc tggctggttt ggaaaattgg aacagagttc
4801 aatacttagg caaatgtact ggactagggg ccccaaccat gaagacccat ctgaaacaat
4861 gataccacac tcccaaagac ccatacaatt aatgtcccta ctgggcgagg ccgcactcca
4921 cggcccagca ttctacagca aaattagcaa gctagtcatt gcagagctga aggaaggtgg
4981 catggatttt tacgtgccca gacaagagcc aatgttcaga tggatgagat tctcagatct
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 gtgacgccaa cccatctgat gggtccgcag ccaacctcgt cccagaggtc aacaatgagg
5161 ttatggctct ggagcccgtt gttggtgccg ctattgcggc acctgtagcg ggccaacaaa
5221 atataattga cccctggatt agaaataatt ttgtacaagc ccctggtgga gagtttacag
5281 tgtcccctag aaacgctcca ggtgagatac tatggagcgc gcccttgggc cctgatttga
5341 acccctatct ttctcatttg tccagaatgt acaatggtta tgcaggcggt ttcgaagtgc
5401 aagtaatcct cgcggggaac gcgttcaccg ccgggaaagt tatatttgca gcagttccac
5461 caaactttcc aactgaaggc ttaagcccca gccaggttac tatgttcccc catataattg
5521 tagatgttag gcaattggaa cctgtgttga tccccctacc tgatgttagg aataatttct
5581 atcattacaa tcaatcacat gattctaccc ttaagttgat agcaatgttg tatacaccac
5641 tcagggctaa taatgccggg gacgatgtct tcacagtctc ttgtcgagtt ctcacgaggc
5701 catcccccga ttttgatttc atattcttgg tgccacccac agttgaatca agaactaaac
5761 cattcaccgt cccaatctta actgttgagg aaatgtccaa ttcaagattc cccattcctt
5821 tggaaaagtt gtacacgggt cctagcagtg cttttgttgt ccaaccacaa aatggcagat
5881 gcacgactga tggcgtgctc ttaggtacta cccagctgtc agctgtcaac atctgtaact
5941 ttagggggga tgtcacccat attgtgggca gccatgatta tacaatgaat ctggcttccc
6001 aaaattggag caattatgac ccaacagaag aaatcccagc ccccctggga acaccagatt
6061 ttgtggggaa gatccaaggc ctgctcaccc agaccacaag agcggatggc tcgacccgtg
6121 cccacaaagc tacagtgagc actgggagtg tccacttcac tccaaagctg ggtagtgttc
6181 aattcaccac tgacacaaac aatgatttcc aaactggcca aaacacgaaa ttcaccccag
6241 ttggcgtcat ccaggacggt gatcaccatc agaatgagcc ccaacaatgg gtactcccaa
6301 attactcagg tagaactggt cataatgtgc acctggcccc tgccgttgcc cccacttttc
6361 cgggtgagca actccttttc tttagatcca ctatgcccgg atgtagcggg tatcccaaca
6421 tgaatttgga ttgcctactc ccccaggaat gggtgctgca cttctaccag gaagcagctc
6481 cagcacaatc cgatgtggct ctgctgagat ttgtgaatcc agacacaggt agggttctgt
6541 ttgagtgcaa gctccataaa tcaggctata tcacagtggc tcacaccggc ccgtatgact
6601 tggttatccc ccccaatggt tattttagat ttgattcctg ggtcaaccag ttctacacac
6661 ttgcccccat gggaaatgga acggggcgca ggcgtgcatt ataatggctg gatctttctt
6721 tgctggattg gcatctgatg tcctcggctc tggacttggt tctctaatca atgctggagc
6781 tggggccatc aaccaaaaag ttgaatttga aaataacaga aaattgcaac aagcttcctt
6841 ccaatttagt agcaatctac aacaggcttc cttccaacat gataaagaga tgctccaagc
6901 acaaattgag gctactcaaa aattgcaaca ggatctgatg aaggttaaac aggcagtgct
6961 cctagagggt ggattttcca caacagatgc agcccgtggg gcaatcaacg cccccatgac
7021 aaaggctctg gactggagcg gaacaaggta ctgggcccct gatgccagga ccacaacata
7081 caatgcaggc cgcttttcca cccttcagcc ttcgggggca ctgccaggaa gaactaatcc
7141 taggattacc gtccccgctc ggggcccccc cagcacactt tctaatgctt ctactgctac
7201 ttctgtgtat tcaaatcaaa ctgtttcaac gagactaggt tcttcagctg gttctggtac
7261 cggtgtctcg agtctcccgt caactgcaag gactaggaac tgggttgagg accaaaacag
7321 gaatttgtca cctttcatga ggggggctct caacacatca ttcgtcaccc ctccatctag
7381 tagatcctct aaccaaggca cagtctcaac cgtgcctaaa gaaattttgg actcctggac
7441 tggcgctttc aacacgcgca ggcagcctct cttcgctcac attcgcaaac gaggggagtc
7501 acgggtgtaa tgtgaaaaga caaaattgat tttctttctc ttctttagtg tctttt
//