Typing tool
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Typing tool
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Complete norovirus genomes
| AJ313030 | GI.4 | |
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| GI.P4 |
ORF1: 1..595
ORF2: 579..2213
ORF3: 2213..2839
LOCUS AJ313030 2928 bp RNA linear VRL 22-JUL-2016
DEFINITION Human calicivirus Hu/NLV/Queen's Arms/Leeds/92/UK ORF1 (partial),
ORF2 and ORF3, genomic RNA.
ACCESSION AJ313030
VERSION AJ313030.1
KEYWORDS non-structural polyprotein; nucleocapsid protein; ORF1; ORF2; ORF3.
SOURCE Human calicivirus Hu/NLV/Queen's Arms/Leeds/92/UK
ORGANISM Human calicivirus Hu/NLV/Queen's Arms/Leeds/92/UK
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Clegg,C.S., Chamberlain,J., Green,J., Brown,D.W.G. and Lewis,D.
TITLE Analysis of diversity in the capsid and ORF3 proteins of some
Norwalk-like viruses circulating in the U.K
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2928)
AUTHORS Clegg,C.S.
TITLE Direct Submission
JOURNAL Submitted (04-MAY-2001) Clegg C.S., Special Pathogens Programme,
Centre for Applied Microbiology and Research, Porton Down,
Salisbury, SP4 0JG, UNITED KINGDOM
FEATURES Location/Qualifiers
source 1..2928
/organism="Human calicivirus Hu/NLV/Queen's
Arms/Leeds/92/UK"
/mol_type="genomic RNA"
/db_xref="taxon:159480"
/country="United Kingdom:Leeds"
/note="recovered during hotel outbreak, Leeds U.K. 1992"
CDS <1..595
/note="ORF1"
/codon_start=2
/product="non-structural polyprotein"
/protein_id="CAC40986.1"
/db_xref="GOA:Q91EJ3"
/db_xref="InterPro:IPR001205"
/db_xref="InterPro:IPR004004"
/db_xref="UniProtKB/TrEMBL:Q91EJ3"
/translation="HWLITLCAMSEVTGLSPDVIQSQSYFSFYGDDEIVSTDIDFDPA
RLTQVLKEYGLRPTRPDKSEGPIILRRQADGLVFLRRTISKDAAGFQGRLDRGSIERQ
LWWTRGPNHDDPSETLIPHPQRKVQLISLLGEASLHGEKFYRKISSKVIQEIKTGGLE
MYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDGV"
CDS 579..2213
/note="ORF2"
/codon_start=1
/product="nucleocapsid protein"
/protein_id="CAC40987.1"
/db_xref="GOA:Q91EJ2"
/db_xref="InterPro:IPR004005"
/db_xref="InterPro:IPR013643"
/db_xref="UniProtKB/TrEMBL:Q91EJ2"
/translation="MMMASKDATPSADGALGAGQLVPEVNTADPIPIDPVAGSSTALA
TAGQVNLIDPWIINNFVQAPQGEFTISPNNTPGDVLFDLQLGPHLNPFLSHLSQMYNG
WVGNMRVRVVLAGNAFTAGKVIICCVPPGFQSRTLSIAQATLFPHVIADVRTLDPVEV
PLEDVRNVLYHNNDTQPTMRLLCMLYTPLRTGGASGGTDSFVVAGRVLTCPGPDFNFL
FLVPPTVEQKTRPFTVPNIPLKYLSNSRIPNPIEGMSLSPDQTQNVQFQSGRCTIDGQ
PLGTTPVSVSQLCKFRGRITSGQKVLNLTGLDGSPFMAFAAPAPAGFPDLGSCDWHIE
MSKIPNSSTQNNPIVINSVKPNSQQFVPHLSSITLDENVLSGGDYIGTIQWTSPPSDS
GGANTNFWKIPDYGSSLAEASQLAPAVYPPGFNEVIVYFMASIPGPNQSGSPNLVPCL
LPQEYITHFISEQAPIQGEAALLHYVDPDTNRNLGEFKLYPGGYLTCVPNSSSTGPQQ
LPLDGVFVFASWVSRFYQLKPVGTRGPARGRLGVRR"
CDS 2213..2839
/function="unknown"
/note="ORF3"
/codon_start=1
/product="hypothetical protein"
/protein_id="CAC40988.1"
/db_xref="InterPro:IPR004278"
/db_xref="UniProtKB/TrEMBL:Q91EJ1"
/translation="MAQAIIGAIAASAAGSALGAGIQAGAEAALQAQRYQQDLTLQQN
SFNHDKEMLGYQMEMSNKLLAKNLNTRYSLLQAGGLSSSDAARAVAGAPVTRLVDWGG
VRVAAPQSSATTLRSGNFMAVPLSSQPKQKPLASEGYSNPAYDPAQRTASWVQSQNSS
RSWSPYHRQALQTVWVTPPGSTSSSSVSTAPRGYFNTDRLPLFANLRR"
ORIGIN
1 ccactggcta atcaccttgt gtgccatgtc tgaggtcaca ggcctatcac ctgatgttat
61 acaatcccag tcttactttt ctttctatgg tgatgatgag atagtctcaa cagatattga
121 ttttgacccc gcccgtctca cccaagtgct taaggaatat ggattgaggc ctacccggcc
181 agacaaatca gaaggaccca tcatacttag gagacaggcg gacggtctcg ttttcttaag
241 gagaacaatt tcaaaagatg ctgcaggttt ccagggaagg ctagacagag gctcaattga
301 aaggcagctc tggtggactc gaggccctaa ccatgatgac cccagtgaga ctttaatccc
361 acacccccaa aggaaagttc agcttatatc cctccttggt gaggcttccc ttcatggtga
421 gaagttttac aggaagatct ccagtaaagt catacaggag ataaagactg gtggtttgga
481 gatgtatgtg ccaggctggc aggctatgtt ccgctggatg cgcttccatg atctcggatt
541 gtggacagga gatcgcaatc tcctgcccga attcgtaaat gatgatggcg tctaaggacg
601 ctacaccaag cgcagatggc gcactcggcg ccggccagct ggtaccggag gttaatacag
661 ctgaccccat acctattgac cctgtggctg gctcctccac ggcccttgcc acagcaggcc
721 aggttaattt gattgatccc tggataatca ataattttgt gcaagcccct cagggcgagt
781 tcacaatatc cccaaacaat acccccggtg atgtgctttt tgatttacaa ttgggacccc
841 atttaaatcc attcctttcc cacctttctc agatgtataa tggttgggtg ggcaacatgc
901 gagtgcgtgt tgtcttggct ggtaatgctt tcacggctgg gaaggttata atttgttgtg
961 ttccccctgg tttccaatct cgtacccttt caatagccca ggctacctta tttccccatg
1021 tcattgctga tgttaggacc cttgaccctg tggaagtgcc ccttgaagat gttaggaatg
1081 tgttgtatca taataatgac acccaaccca ccatgcgcct cctttgcatg ttgtatactc
1141 ctctccgcac cgggggagcg tctggtggga ctgattcttt tgtggtagct gggcgtgtac
1201 tcacctgccc aggccctgac ttcaacttct tattcctagt ccctcccaca gttgagcaaa
1261 agactcgccc tttcactgta cctaacatcc ctttgaagta cctgtctaat tctaggatcc
1321 caaatcccat tgaaggtatg tcactgtcac ctgaccaaac ccaaaatgtt caattccaga
1381 gtggtaggtg tacaattgac ggtcaacccc tcgggaccac acctgtctca gttagtcagt
1441 tgtgtaagtt tagaggtagg attacatctg gacagaaggt gctcaatttg acaggattgg
1501 atggttcacc tttcatggcc tttgctgccc ccgctcctgc gggcttccca gatcttgggt
1561 cctgtgattg gcacattgag atgagtaaaa tcccaaattc tagcacccag aacaacccaa
1621 tagtgattaa ttctgttaag cccaatagtc aacagtttgt cccacattta tcaagtatca
1681 cccttgatga aaatgttctt agcgggggcg actatattgg cactatacaa tggacctctc
1741 ctccttctga ttctggcgga gccaacacaa atttttggaa aatccctgac tatgggtcta
1801 gcttagcaga agcttcacaa ctggcccccg ctgtctatcc acctggtttt aatgaggtga
1861 ttgtgtattt tatggcatct atacctggtc ccaatcagtc tgggtctcct aatttggtgc
1921 catgtctgct ccctcaggaa tatataacac actttattag tgagcaggcc cccatccagg
1981 gcgaggctgc cctactccac tacgtggacc cagacaccaa tcgtaatttg ggtgagttca
2041 aattgtatcc tggtggttat ttaacctgtg tccctaatag ctctagtact ggacctcaac
2101 aacttcctct tgatggtgta tttgtctttg cttcttgggt ttccagattt tatcaattaa
2161 agcctgtggg aacacgcgga ccggctagag gtaggcttgg tgtccgtaga taatggccca
2221 agccattata ggagccattg ccgcctccgc agccggtagc gccctgggtg ctggcatcca
2281 ggctggtgct gaagctgcgc tgcaggcaca gagatatcaa caagatttga ctttgcagca
2341 aaattctttt aatcatgata aagaaatgtt aggttatcaa atggaaatgt ctaataagtt
2401 gctagctaaa aatctcaata cccgctattc tcttctccag gcgggtggcc tctcatcctc
2461 tgatgcggct agggctgtgg ccggggctcc cgtcactaga ttggtcgact gggggggcgt
2521 gcgtgttgcg gcacctcaat cgtctgctac cacattgaga tctggtaatt ttatggcagt
2581 gccactctca tctcagccca aacagaaacc ccttgctagt gaaggttatt ctaaccctgc
2641 ttatgaccct gcacaacgta cagcttcttg ggttcaatct cagaattcca gccggtcttg
2701 gtctccatac cataggcagg cccttcagac tgtgtgggtg accccccctg gttctacctc
2761 ttcttcttcc gtttctactg cccctcgagg gtattttaat acagatagat tgcctctgtt
2821 cgcaaacttg aggcgttaat gttgtaataa gatcagtgag catcctattc aatttggctt
2881 tatataattt ggttatattt ggctttcaat tttgatttgg ttgatgtt
//