Typing tool
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Typing tool
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Complete norovirus genomes
| AF539440 | GII.3 | |
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| GII.P21 |
ORF1: 1..420
ORF2: 401..2047
ORF3: 2047..2750
LOCUS AF539440 2750 bp RNA linear VRL 24-JUL-2016
DEFINITION Human calicivirus NLV/Oberhausen 455/01/DE RNA-dependent RNA
polymerase (pol) gene, partial cds; capsid protein gene, complete
cds; and unknown gene.
ACCESSION AF539440
VERSION AF539440.1
KEYWORDS .
SOURCE Human calicivirus NLV/Oberhausen 455/01/DE
ORGANISM Human calicivirus NLV/Oberhausen 455/01/DE
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 2750)
AUTHORS Kuenkel,U. and Schreier,E.
TITLE Characterization of recombinant human calicivirus circulating in
Germany
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2750)
AUTHORS Kuenkel,U. and Schreier,E.
TITLE Direct Submission
JOURNAL Submitted (20-AUG-2002) Molecular Virology, Robert Koch Institute,
Nordufer 20, Berlin 13353, Germany
FEATURES Location/Qualifiers
source 1..2750
/organism="Human calicivirus NLV/Oberhausen 455/01/DE"
/mol_type="genomic RNA"
/strain="Hu/NLV/Oberhausen 455/01/DE"
/db_xref="taxon:173921"
/note="genotype: 2"
gene <1..420
/gene="pol"
CDS <1..420
/gene="pol"
/note="nonstructural protein"
/codon_start=1
/product="RNA-dependent RNA polymerase"
/protein_id="AAN16372.1"
/translation="PDKTEGPLIISEDLDGLTFLRRTVTRDPAGWFGKLDQSSILRQM
YWTRGPNHEDPFETMIPHSQRPIQLMSLLGEAALHGPSFYSKISKLVISELKEGGMDF
YVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 401..2047
/note="structural protein"
/codon_start=1
/product="capsid protein"
/protein_id="AAN16373.1"
/translation="MKMASNDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESDDFDQNQP
TRFTPVGVGVDHEADFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
CDS 2047..>2750
/note="Orf3"
/codon_start=1
/product="unknown"
/protein_id="AAN16374.1"
/translation="MAGAFIAGLAGDILTNTVGSLVNAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPNATSTTSLSGGFTNQAVHRTTPNFKTNQAPKSTPSSGSSVRSNSTQVTSLSS
HSSGSSRSSGSTVVSSLPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDSWTSA"
ORIGIN
1 cctgataaaa cagaaggacc cttaattatc tctgaagatt tggatggcct gaccttctta
61 cggagaacgg tgacccgtga tccggctggg tggtttggca aactggacca aagttcaata
121 ctcaggcaga tgtactggac caggggacca aaccatgagg acccctttga aacaatgata
181 ccacattccc aaagacccat acaactgatg tcactactgg gtgaagctgc attacatggc
241 ccatcgttct acagcaaaat tagcaaattg gtcatctcag aattgaaaga gggtggaatg
301 gatttttacg tgcccagaca agaaccaatg tttaggtgga tgagattctc agatttgagc
361 acgtgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgaatga
421 cgccactcca tctaatgatg gtgccgccgg cctcgtccca gagatcaaca atgaggcaat
481 ggcgctagat ccagtggcgg gtgcagcgat agcagcaccc ctcactggtc agcagaatat
541 aattgatccc tggattatga ataattttgt gcaagcacct ggtggtgagt ttacagtatc
601 ccctaggaat tcccctggtg aagtgcttct taatttggaa ttgggcccag aaataaatcc
661 ctatttggcc catcttgcta gaatgtataa tggttatgca ggtggatttg aagtgcaggt
721 agtcctagct ggaaatgcgt ttacagcagg aaagataatc tttgcagcta taccccctaa
781 ttttccaatt gataatctaa gcgcagcaca gatcacaatg tgcccacatg tgattgtgga
841 tgtcagacag ttggaaccgg tcaacctccc gatgcctgac gttcgcaaca acttctttca
901 ttacaatcaa gggtctgatt cgagattgcg cttaattgca atgctgtata cacctcttag
961 ggcaaataat tctggggatg atgtttttac tgtgtcttgt agagtgctga ctaggcctag
1021 ccctgacttt tcatttaatt tccttgtgcc acctactgtg gagtcaaaga caaaaccctt
1081 caccctccct attctgacta tctctgaaat gtccaattct aggtttccag tgccgattga
1141 ttctctgcac accagcccaa ctgagaatat tgttgtccag tgccaaaatg ggcgcgtcac
1201 tcttgatggt gagttgatgg gcaccaccca actcttacct agtcaaatct gtgctttcag
1261 gggcgtgctc accagatcaa caagcagggc cagtgatcag gccgacacag caacccctag
1321 gttgtttaat tattattggc acatacaatt ggataatcta aatgggactc cttatgatcc
1381 tgcagaagac ataccaggcc ccctagggac accagatttc cggggcaagg tctttggcgt
1441 ggccagccag agaaatcccg acagcacaac tagagcacat gaagcaaagg tggacacaac
1501 agctggtcgt ttcaccccaa aactaggctc attagagata tccactgaat ctgatgactt
1561 tgatcaaaac caaccaacaa gattcacccc agttggcgtt ggggttgacc atgaggcaga
1621 ctttcaacaa tggtctttac ccgactattc tggtcagttc acccacaaca tgaacttagc
1681 cccagctgtt gctcccaact tccctggtga gcagctcctt ttctttcgct cacagttacc
1741 atcctctggt gggcgatcca acgggattct agactgcctg gtcccccaag aatgggttca
1801 gcacttctac caagaatcgg cccccgccca aactcaagtg gccctggtta ggtatgtcaa
1861 ccctgacact ggtagagtat tatttgaggc caagctgcac aaattaggtt tcatgactat
1921 agctaagaat ggtgactctc caataactgt ccctccaaat ggatacttta ggtttgaatc
1981 ttgggtgaac ccattttata cacttgcccc catgggaact gggaatgggc gtagaaggat
2041 tcaataatgg ctggagcttt tatagcagga ttagctggtg atatactcac aaatactgta
2101 ggatctctag ttaatgcagg ggctaatgct attaatcaaa aagttgattt tgaaaacaat
2161 aaatatttac aaaatgcttc ctttaatcat gacaaggaaa tgttaaatgc acaaattgag
2221 gcaacaaaga ggttacaggc tgacatgatt gctatcaaac aaggggtttt gaccgctggc
2281 ggcttctccc ctactgatgc agcccgcggg gcaattaatg cccccatgac aaaagtccta
2341 gattggaatg gaacgaggta ctgggcacca aatgccacct ccacaacctc gttgtcgggt
2401 ggcttcacaa atcaagctgt gcacagaact acgccaaatt ttaaaacgaa ccaggctccc
2461 aaatccacac ccagcagtgg gtcttcagtg aggtcaaact caacccaagt cactagcctg
2521 agctcacact cgtccgggtc gtctcgatcc agcgggtcta cagttgttag ctcattacca
2581 tcctctaaca ggactaggga ctgggtcaac caacaaaatt ttaatttgga accacacatg
2641 cctggatctc ttagaacagc ttttgttact ccaccatcta gtacagcctc tagttcaggc
2701 acggtctcaa ccgtgcccaa aaatgttttg gactcctgga catctgcgtt
//