Typing tool
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Typing tool
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Complete norovirus genomes
| AF539439 | GII.3 | |
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| GII.P21 |
ORF1: 1..515
ORF2: 496..2142
ORF3: 2142..2852
LOCUS AF539439 2852 bp RNA linear VRL 24-JUL-2016
DEFINITION Human calicivirus NLV/Herzberg 385/01/DE RNA-dependent RNA
polymerase (pol) gene, partial cds; capsid protein gene, complete
cds; and unknown gene.
ACCESSION AF539439
VERSION AF539439.1
KEYWORDS .
SOURCE Human calicivirus NLV/Herzberg 385/01/DE
ORGANISM Human calicivirus NLV/Herzberg 385/01/DE
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 2852)
AUTHORS Kuenkel,U. and Schreier,E.
TITLE Characterization of recombinant human calicivirus circulating in
Germany
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2852)
AUTHORS Kuenkel,U. and Schreier,E.
TITLE Direct Submission
JOURNAL Submitted (20-AUG-2002) Molecular Virology, Robert Koch Institute,
Nordufer 20, Berlin 13353, Germany
FEATURES Location/Qualifiers
source 1..2852
/organism="Human calicivirus NLV/Herzberg 385/01/DE"
/mol_type="genomic RNA"
/strain="Hu/NLV/Herzberg 385/01/DE"
/db_xref="taxon:207828"
/note="genotype: 2"
gene <1..515
/gene="pol"
CDS <1..515
/gene="pol"
/note="nonstructural protein"
/codon_start=3
/product="RNA-dependent RNA polymerase"
/protein_id="AAN16369.1"
/translation="YGDDEIVSTDIKLDPEKLTTKLKEYGLKPTRPDKTEGPLIISED
LDGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHEDPFETMIPHSQRPIQLMS
LLGEAALHGPSFYSKISKLVISELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLA
PSFVNEDGVE"
CDS 496..2142
/note="structural protein"
/codon_start=1
/product="capsid protein"
/protein_id="AAN16370.1"
/translation="MKMASSDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGELLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTPTPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESGDFDQNQP
TRFTPVGIGVDHEADFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
CDS 2142..>2852
/note="Orf3"
/codon_start=1
/product="unknown"
/protein_id="AAN16371.1"
/translation="MAGAFIAGLAGDIFTNTVGSLVSAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPNATSTTSMSGGFTNQAVHRTTPNFKTNQTPKTTPSSGSSVRSNSTQITSLSS
HSSGSSRSSGSTVVSSLPSSNRTRDWVNQQNFNLAPHMPGSLRTAFVTPPSSTVSSSD
TVSTVPKNVLDSWTSAFNT"
ORIGIN
1 tttatggcga tgatgaaata gtgagcacag acatcaaatt ggatccagag aaattgacaa
61 caaaattgaa ggaatacggg ctaaaaccaa ctcgtcctga taaaacagaa ggacccttaa
121 ttatctctga agatttggat ggcctgacct tcttacggag aacggtgacc cgtgatccgg
181 ctgggtggtt tggcaaactg gaccaaagtt caatactcag gcagatgtac tggaccaggg
241 gaccaaacca tgaggacccc tttgaaacaa tgataccaca ctcccaaaga cccatacaac
301 tgatgtcact actgggtgaa gctgcactac atggcccatc attctacagt aaaatcagca
361 aattggttat ctcagaattg aaagagggtg gaatggattt ttacgtaccc agacaagaac
421 caatgtttag gtggatgaga ttctcagatt tgagcacgtg ggagggcgat cgcaatctgg
481 ctcccagttt tgtgaatgaa gatggcgtcg agtgacgcca ccccatctaa cgatggtgcc
541 gccggcctcg tcccagagat caacaatgag gcaatggcgc tagatccggt ggcgggtgca
601 gcgatagcag cacccctcac tggtcagcaa aatataattg atccctggat tatgaataat
661 tttgtgcaag cacctggtgg tgagtttaca gtgtccccta ggaattcccc tggtgaattg
721 cttcttaact tggaattggg tccagaaata aacccctatt tagcccatct tgctagaatg
781 tataatggtt atgcaggtgg atttgaagtg caggtagtcc tggctggaaa tgcgtttaca
841 gcagggaaga taatctttgc agctataccc cctaattttc caattgacaa tctgagcgca
901 gcacagatca cgatgtgtcc gcatgtgatt gtggatgtca gacagttgga accggtcaac
961 cttccgatgc ctgacgttcg caacaacttc tttcattaca atcaagggtc tgattcgaga
1021 ttgcgcttaa ttgcaatgct gtatacacct cttagggcaa ataattctgg ggatgatgtt
1081 ttcactgtgt cttgtagagt gttgactagg cctagccctg acttttcatt taatttcctt
1141 gtgccaccta ctgtggagtc aaagacaaaa cccttcaccc tccctattct gactatctct
1201 gaaatgtcca attctaggtt tccagtgccg attgattctc tgcacaccag cccaactgag
1261 aacattgttg tccagtgcca aaatgggcgc gtcactcttg acggtgagtt gatgggcacc
1321 acccaactct taccgagtca aatctgtgct tttaggggcg tgctcaccag atcaacaagc
1381 agggccagtg atcaggccga cacaccaacc cctaggttgt ttaattatta ttggcacata
1441 caattggaca acctaaatgg gactccttat gaccctgcag aagacatacc aggcccccta
1501 gggacaccag attttcgggg caaagtcttt ggcgtggcca gccagagaaa tcccgacagc
1561 acaactagag cacatgaagc aaaggtggac acaacagctg gtcgtttcac cccaaaatta
1621 ggctcattag agatatccac tgaatctggt gactttgacc aaaaccaacc aacaagattc
1681 accccagttg gcattggggt tgaccatgag gcagactttc aacaatggtc tttacccgac
1741 tattctggtc agttcactca caacatgaac ttggccccag ctgttgctcc caacttccct
1801 ggtgagcagc tccttttctt ccgctcacaa ttaccatcct ctggtgggcg atccaacggg
1861 attctagact gcctggtccc ccaagaatgg gttcagcact tctaccaaga atctgccccc
1921 gcccaaacac aagtggccct ggttaggtat gtcaaccctg acactggtag agtgttattt
1981 gaggccaagc tgcacaagtt aggtttcatg actatagcta agaatggtga ctctccaata
2041 actgtccctc caaatggata ctttaggttt gaatcttggg taaacccctt ttatacactt
2101 gcccccatgg gaactgggaa tgggcgtaga aggattcaat aatggctgga gcttttatag
2161 caggattggc tggtgacata ttcacaaata ctgtaggatc tctagttagt gcaggggcta
2221 atgctattaa tcaaaaagtt gattttgaaa acaataaata tttacaaaat gcatccttca
2281 atcatgataa agaaatgtta aatgcacaaa ttgaggcaac aaagaggtta caggctgaca
2341 tgattgctat caaacaaggg gttttgaccg ctggcggctt ctcccccact gatgcagccc
2401 gcggggcaat taatgccccc atgacaaaag tcctagattg gaatggaaca aggtactggg
2461 caccaaatgc cacctccaca acttcaatgt cgggtggctt tacaaatcag gctgtgcaca
2521 gaaccacgcc aaattttaaa acgaaccaga ctcccaaaac cacacccagc agtgggtctt
2581 cagtgaggtc aaactcaacc caaatcacta gcctgagctc acactcgtcc gggtcgtctc
2641 gatccagcgg gtctacagta gtcagctcat taccatcctc taacaggact agggactggg
2701 tcaaccaaca aaattttaat ttggcaccac acatgcctgg atctcttagg acggcttttg
2761 ttactccacc atctagcaca gtctctagtt cagacacagt ctcaaccgtg cccaaaaatg
2821 ttttggactc ctggacatct gcgttcaaca ct
//