Typing tool
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Typing tool
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Complete norovirus genomes
| AF504671 | GII.10 | |
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| GII.P12 |
ORF1: 5..5104
ORF2: 5085..6731
ORF3: 6731..7507
LOCUS AF504671 7540 bp RNA linear VRL 16-FEB-2005
DEFINITION Norwalk virus strain Vietnam 026, complete genome.
ACCESSION AF504671 AF504650
VERSION AF504671.2
KEYWORDS .
SOURCE Norwalk virus
ORGANISM Norwalk virus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus.
REFERENCE 1 (bases 1 to 7540)
AUTHORS Hansman,G.S., Doan,L.T., Kguyen,T.A., Okitsu,S., Katayama,K.,
Ogawa,S., Natori,K., Takeda,N., Kato,Y., Nishio,O., Noda,M. and
Ushijima,H.
TITLE Detection of norovirus and sapovirus infection among children with
gastroenteritis in Ho Chi Minh City, Vietnam
JOURNAL Arch. Virol. 149 (9), 1673-1688 (2004)
PUBMED 15593412
REFERENCE 2 (bases 1 to 7540)
AUTHORS Hansman,G.S., Katayama,K., Ushijima,H. and Takeda,N.
TITLE Recombinant Norovirus strains
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 7540)
AUTHORS Hansman,G.S., Lan,D., Okitsu,S., Nishio,O., Kato,Y., Ushijima,H.
and Takeda,N.
TITLE Direct Submission
JOURNAL Submitted (18-APR-2002) Department of Developmental Medical
Sciences, Graduate School of Medicine, University of Tokyo, 7-3-1
Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
REFERENCE 4 (bases 1 to 7540)
AUTHORS Hansman,G.S., Katayama,K., Ushijima,H. and Takeda,N.
TITLE Direct Submission
JOURNAL Submitted (18-MAR-2003) Virology II, National Institute o
Infectious Diseases, 4-7-1 Gahuen, Musashi murayama, Tokyo
208-0011, Japan
REMARK Sequence update by submitter
COMMENT On or before May 14, 2004 this sequence version replaced
AF504650.1, AF504671.1.
FEATURES Location/Qualifiers
source 1..7540
/organism="Norwalk virus"
/mol_type="genomic RNA"
/strain="Vietnam 026"
/db_xref="taxon:11983"
CDS 5..5104
/note="encodes helicase, VPg, 3Cpro, and RdRp"
/codon_start=1
/product="polyprotein"
/protein_id="AAM81234.2"
/translation="MKMASNDASAAAAANSNNDTAKSSSDGMLSSMAVTFKRALGARP
KQPPPREIPQRPPRPPTPELIKKIPPPPPNGEDEPVVSYSVKDGVSGLPELTTVRQPG
EANTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELTPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS
WLCRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK
VRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL
AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPEVEK
AKRDFPGQPDMWKNAFSSDFSHIKLMLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGRQLKDVRTM
PELKQALKSISIKRCQIVYSGCTYMLESDGKGEVKVDRVQNATVQTNNELAGALHHLR
CARIRYYVKCIQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEETVSKDGC
PKPKDDDEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNERLNFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAQEFFGVSIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMEELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPNLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWSRGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5085..6731
/note="ORF2"
/codon_start=1
/product="capsid protein"
/protein_id="AAT12445.1"
/translation="MKMASNDAAPSNDGAAGLVPESNNEVMALEPVAGASLAAPVTGQ
TNIIDPWIRMNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLSRMYNGYAGG
MEVQIMLAGNAFTAGKLIFAAVPPHFPIENLSPPQITMFPHVIIDVRTLEPVLLPMPD
IRNSFFHFIQRDEPKMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFDFTYLVPP
TVESKSKPFTLPILTLGELTNSRFPLPIDVLYTNPNESAIVQCQNGRCTLDGELQGTT
QLLPTGICAFRGKVTQQVQDEHRGTHWNMTVTNLNGTPFDPTEDVPAPLGTPDFSGQI
YGVISQRNTNTVPGEGNLPANRAHEAVIATYSPKFTPKLGNIQFSTWETQDVSSGQPT
KFTPVGLASVDANSHFDQWTLPSYSGALTLNMNLAPSVAPVFPGECLLFFRSFIPLKG
GYGNPAIDCLMPQEWVQHLYQESAPSLSDVALVRYVNPETGRTLFEAKLHRNGFLTVA
RNSAGPVVAPTNGYFRFDSWVNQFYTLAPMGNGSGRRRMQ"
CDS 6731..7507
/note="ORF3"
/codon_start=1
/product="unknown"
/protein_id="AAT12446.1"
/translation="MAGAFIAGLAGDVLSNGIGSLINAGANAINQKAEFDFNRQLQQN
SFNHDKEMLQAQVQATKQLQADMIAIKQGMLTAGGFSPTDAARGAVNAPMTQALDWSG
TRYWAPGAMRTSSYSGRFLSTTPTRQVEFPQRKSAAPSSAGSNYSGSSRSTASTTLGS
SASSSSRISPSTHSSLVSDTSSSRSRTSDWVREQNRSLEPFMHGALQTAYVTPPSSRA
SSNGTVSTVPKGVLDSWTPAFNTRRQPLFAYLRPKGESRV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gctgctaaca gcaacaacga
61 caccgcaaaa tcttcaagtg acggaatgct ttctagcatg gctgtcactt ttaaacgagc
121 cctcggggca cggcctaaac agcctccccc gagggaaata ccacaaagac ccccacgacc
181 acccacccca gaactgatca aaaagatccc tcctccccca cccaacgggg aggatgaacc
241 agtggtttct tacagcgtca aagatggcgt ttccggcttg cctgagctta ctactgtcag
301 gcagccgggt gaagccaaca cggcgttcag tgttccccca ctcaaccaaa gggaaaatag
361 ggatgccaag gagccactaa ctggaacaat cctggaaatg tgggacgggg agatctacca
421 ttacggcctg tatgtggaac gaggtcttgt acttggtgtg cacaaaccac cggctgccat
481 cagcctcgcc aaggttgaac taacaccact ctctctgttt tggagaccag tgtatacacc
541 acagtatctc atctctccgg acactctcag gagactgcac ggggagtcgt ttccctacac
601 agcctttgac aacaactgct atgccttctg ttgttgggtc ctggacctaa acgactcgtg
661 gttgtgcagg agaatgatcc agaggacaac tggtttcttc aggccctacc aagactggaa
721 taggaaaccc cttcccacca tggatgactc caagttgaag aaggtagcta acatattctt
781 gtgcgcgcta tcttcgctat tcactaggcc catcaaagac ataataggaa aggtgaggcc
841 tctcaacatc cttaacatct tggcctcgtg tgattggact tttgcaggca tagtggaatc
901 tttgattctc ttggcagagc tctttggagt tttctggaca cccccagatg tgtctgcgat
961 gatcgcccct ttactaggtg actacgagct gcagggaccc gaggaccttg cagtggaact
1021 cgttccaata gtgatggggg ggattggttt ggtgctagga ttcaccaaag agaagatcgg
1081 gaaaatgttg tcatctgctg catccacctt aagagcttgt aaagatcttg gtgcatacgg
1141 actggaaatc ttaaaattgg tcatgaagtg gttcttccca aagaaagagg aagcaaatga
1201 gctggctatg gtgaggtcca tcgaggatgc ggtgctggac ctcgaggcaa ttgagaacaa
1261 ccacatgact gccctcctca aagacaaaga cagcctggca acctacatga gaactctcga
1321 cctcgaggag gagaaagcca gaaagctttc aaccaagtct gcttcacctg atatcgtggg
1381 cacaatcaac gctctcctgg cgagaatcgc cgctgcacgc tccctggtgc atcgggcgaa
1441 agaggagctc tccagcagac caagacctgt tgttgtgatg atatcaggca ggccagggat
1501 agggaaaacc caccttgcca gggaattggc caagagaatc gctgcttctc ttacagggga
1561 ccagcgtgtg ggtcttatcc cgcgcaatgg tgttgatcac tgggacgcat ataagggaga
1621 aagagtcgtt ctatgggacg actatggaat gagtaacccc atccacgacg ccctcaggtt
1681 acaagaactt gctgacacct gccccctcac gctaaattgt gataggattg agaacaaagg
1741 aaaggttttt gacagtgatg ccataatcat caccactaac ctggccaacc cagcaccact
1801 ggactatgtc aattttgaag catgctcgag gcgcattgac ttcctcgtgt atgcagatgc
1861 tcctgaggtc gagaaggcaa aacgtgactt tccaggtcaa cctgacatgt ggaagaacgc
1921 tttcagttct gacttctcgc acataaaact gatgctggcc ccgcagggtg gcttcgacaa
1981 gaacggaaac accccacatg ggaaaggcgt catgaaaacc ctcaccactg gttccctcat
2041 cgctcgagca tcagggctac tccatgagag gttagatgag tacgagctgc agggcccaac
2101 ccccaccacc ttcaactttg accgcaacaa ggtgcttgcg ttcagacagc ttgctgctga
2161 aaacaagtac gggttgatgg acacaatgag agtcggaaga cagctcaaag atgtcaggac
2221 catgccagaa ctcaaacaag cactcaagag tatctcaatc aagagatgcc agatagtgta
2281 tagtggctgc acctatatgc ttgagtctga tggcaagggt gaagtgaaag ttgacagagt
2341 tcagaacgcc actgtgcaga ccaacaatga actggccggt gccctacacc atcttcggtg
2401 tgccagaatt agatactatg tcaagtgcat tcaggaggcc ctgtattcca tcatccaaat
2461 tgctggagct gcatttgtca ccacgcgcat tgtcaagcgc atgaacatac aagacctttg
2521 gtccaagcca caggtggaag atacagagga gactgttagc aaggatgggt gcccaaaacc
2581 caaggatgat gacgagttcg ttgtttcatc cgacgacatc aaaaccgagg gcaagaaagg
2641 aaagaacaag tctggccgtg gtaagaagca cacagcattc tcaagcaaag gtctcagtga
2701 tgaagagtac gatgagtaca aaagaatcag agaagaaaga aacggcaagt actctataga
2761 ggagtacctt caggacagag acaagtatta tgaggaggtg gccatcgcca gggcgaccga
2821 agaggacttc tgtgaagaag aagaagccaa gatccgacaa aggattttta ggccaacaag
2881 gaaacaacgc aaagaggaga gggcctctct cggtttggtc acaggttctg aaatcaggaa
2941 gaggaaccca gacgacttca agcctaaagg aaagctgtgg gctgatgacg acaggagtgt
3001 tgactacaat gagagactta attttgaagc cccaccaagc atttggtcga ggatagtcaa
3061 ctttggttca ggttggggtt tttgggtttc ccccagcctg ttcataacat caactcacgt
3121 cataccccag ggcgcacagg agttctttgg ggtttccatc aagcaaattc agatacacaa
3181 atcgggtgaa ttctgtcgct tgaggtttcc aaaaccaatc agaactgatg tgacaggcat
3241 gattctagaa gaaggtgcgc ccgaagggac cgtagtcaca ttactcatca agagaccaac
3301 tggagaactc atgcccttgg cagccagaat gggaacccat gcaaccatga agatacaagg
3361 gcgcactgtt gggggtcaaa tgggcatgct cctaacagga tctaacgcca agagtatgga
3421 cctgggcacc acaccaggtg actgtggctg tccctacatt tacaagaggg ggaatgacta
3481 catagtcatt ggagtccaca cggctgctgc ccgtggagga aacactgtca tatgtgccac
3541 ccaggggagc gagggagaag ccacacttga aggcggtgac aacaaaggaa cctattgcgg
3601 tgcaccaatc ttaggtccag ggagtgcccc aaagctcagc accaagacta agttttggag
3661 atcatccaca gcaccactcc cacctggtac ctatgaacca gcctaccttg gcggtaagga
3721 ccccagagtc aagggtggcc cctcattgca acaagtcatg agggaccagc tgaaaccatt
3781 cactgagccc aggggtaaac caccaaaacc aagtgtgtta gaggctgcca agaaaaccat
3841 catcaatgtt ctcgaacaaa caattgatcc acctcaaaaa tggtcattcg cgcaggcatg
3901 cgcatccctc gacaagacca cttccagtgg ccacccgcac cacatgcgga aaaacgactg
3961 ctggaacggg gagtccttca caggcaaatt ggcagaccag gcttccaagg ctaacctgat
4021 gttcgaagag ggaaagaaca tgactccagt ctacacaggt gcgcttaagg acgagctggt
4081 caagactgac aaaatttatg gcaagatcaa aaagaggctt ctctggggct cggatctggc
4141 gaccatgatc cggtgtgctc gagcgtttgg aggcctgatg gaggaactca aagcacattg
4201 tgtcacacta cccgtcagag taggtatgaa tatgaatgag gatggcccta tcatctttga
4261 gagacactcc agatataagt atcattatga tgctgattac tcccggtggg actcaacaca
4321 acaaagagcc gtgttagcag cagccttaga aatcatggtt aagttctccc cagaaccgaa
4381 tctggcccaa aaggttgcag aagaccttct ctctcccagc gtgatggacg ttggtgactt
4441 caaaatatca atcaatgagg gcctcccctc cggggtgccc tgcacctccc aatggaattc
4501 tatcgcccac tggctcctca ccctctgtgc gctttctgag gttacaaacc tgtcccctga
4561 cattatccag gctaattccc tcttttcctt ctacggtgat gatgaaattg tgagcacaga
4621 cataaaattg gacccagaga agctgacagc aaaacttaag gaatacgggt tgaaaccgac
4681 ccgccctgat aagactgagg gaccccttgt tatctctgag gacctggatg gcctaacctt
4741 cctgcggagg actgtgaccc gcgacccagc tggctggttt ggaaagctgg aacagagttc
4801 aatacttagg caaatgtatt ggagtagggg ccccaaccat gaagacccat ctgaaacaat
4861 gataccacac tcccaaagac ccatacaatt gatgtctttg ctgggcgagg ctgcactcca
4921 cggcccagca ttctacagca aaatcagcaa gctggtcatt gcagagctga aggaaggtgg
4981 catggatttt tacgtgccca gacaagagcc tatgttcaga tggatgaggt tttcagatct
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 atgacgccgc tccatctaat gatggtgcag ccggcctcgt gccagaaagt aacaatgagg
5161 ttatggctct tgaacccgtt gctggggcat ctttagctgc ccctgtgact ggtcaaacta
5221 atataattga cccatggatc agaatgaatt ttgttcaagc cccaaatgga gaattcactg
5281 tttccccaag aaattcccct ggagaagtac tcctaaattt ggaattgggt cctgaattaa
5341 acccttatct ggcacaccta tctaggatgt ataatggcta tgctgggggt atggaagtac
5401 agatcatgct agctgggaat gcgttcactg ctggtaaact gatctttgct gctgtgcccc
5461 cacattttcc tattgaaaat ttgagtcccc cccagattac aatgttccca catgtgatta
5521 tagatgttag aactttagaa cctgtgttgc tccctatgcc tgacatcagg aattctttct
5581 ttcactttat ccagagggat gagccaaaga tgaggttggt ggcaatgctg tacacgccac
5641 tgaggtccaa cggatctggg gatgatgtat tcacagtttc ctgcagggtt ctgacccgcc
5701 ctactcctga tttcgatttc acttacttag taccaccaac tgtcgagtca aagagtaagc
5761 ctttcacttt acctatatta acattgggag agttgacaaa ttctaggttt ccattaccca
5821 ttgatgtcct gtatactaat ccaaatgaaa gtgcaattgt tcaatgtcag aatggtaggt
5881 gcaccctgga cggcgagttg caggggacga ctcaactcct acccacaggc atctgtgcgt
5941 tcaggggcaa agtcactcaa caggtgcagg atgaacatcg gggcacacat tggaatatga
6001 cagtaaccaa cttaaatggt accccgtttg acccaactga ggatgtccct gctccactgg
6061 gcaccccgga tttctccggc caaatttatg gggtgattag tcagaggaat accaacacag
6121 ttcccggtga gggaaacctc ccggccaaca gggctcacga ggcagtgatt gcaacctaca
6181 gtcccaaatt cacacccaaa ttgggcaata ttcaattcag cacttgggaa actcaagatg
6241 tgagctctgg acaacccacc aagttcaccc cagttggctt ggcctccgtg gatgctaact
6301 cccattttga ccaatggacc ctccccagct attctggtgc cctaactcta aatatgaact
6361 tggccccatc tgtcgcccca gttttccctg gagagtgtct tttgttcttt agatctttca
6421 tcccattaaa ggggggctat gggaaccctg ctattgattg cttgatgcca caggaatggg
6481 tccagcatct ctaccaggag tcggcaccat cccttagtga tgtggcttta gtgaggtatg
6541 tgaacccaga aactgggcgc accctttttg aagccaagtt gcacaggaat ggatttctga
6601 ctgttgctag gaacagtgct ggacctgtcg tggcccccac aaatggttat tttagatttg
6661 attcttgggt taaccaattt tacactttag cccccatggg aaatggtagt gggcgcagaa
6721 gaatgcagta atggctggag cttttatagc aggtttggct ggtgatgttc tcagtaatgg
6781 gatcgggtcg ctcattaatg ctggtgccaa tgcaatcaat cagaaagctg aattcgattt
6841 caatagacaa ttacaacaaa attctttcaa tcatgataaa gaaatgctcc aggcccaagt
6901 tcaagcaaca aagcagctgc aggcagacat gatcgccatc aagcaaggga tgttgaccgc
6961 tggcggcttc tcccccactg acgcagcaag aggagcagtc aacgctccca tgacacaggc
7021 tttggactgg agtggcacga ggtactgggc cccaggtgcc atgagaacat ctagttattc
7081 aggtaggttt ctgtcaacta ctccaactag gcaggttgag ttccctcagc gcaagagtgc
7141 tgccccctct agtgctggtt ccaactatag tgggtcttct aggtctacag cttctaccac
7201 tcttggatct tctgcttctt ctagttctag aatatcaccc tcaactcatt ctagtttagt
7261 ttctgacact tcttcctcaa gatcaagaac cagtgactgg gtgcgtgagc aaaaccgaag
7321 tctagaaccc ttcatgcatg gggctttgca gactgcttat gtcactcctc catcaagcag
7381 agcttctagc aacgggacag tctcgaccgt cccaaaaggc gttttggact cttggacacc
7441 tgcgtttaac acccgcaggc agccgctttt cgcatacctt cgaccgaagg gagagtcacg
7501 agtttagtga aaagattgat tttctcttaa tttttctttt
//