Typing tool
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Typing tool
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Complete norovirus genomes
| AF414427 | GIV.1 | |
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| GIV.P1 |
ORF1: 1..787
ORF2: 768..2438
ORF3: 2438..3166
LOCUS AF414427 3244 bp ss-RNA linear VRL 26-JUL-2016
DEFINITION Norwalk-like virus NLV/Saint Cloud/624/1998/US RNA polymerase
(orf1) gene, partial cds; and capsid protein (orf2) and minor
structural protein (orf3) genes, complete cds.
ACCESSION AF414427
VERSION AF414427.1
KEYWORDS .
SOURCE Norwalk-like virus NLV/Saint Cloud/624/1998/US
ORGANISM Norwalk-like virus NLV/Saint Cloud/624/1998/US
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3244)
AUTHORS Fankhauser,R.L., Bartkus,J., Noel,J.S., Monroe,S.S., Glass,R.I. and
Ando,T.
TITLE Detection and identification of a strain belonging to the new
genogroup of 'Norwalk-like viruses' in human, genogroup IV
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3244)
AUTHORS Fankhauser,R.L., Bartkus,J., Noel,J.S., Monroe,S.S., Glass,R.I. and
Ando,T.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2001) Viral Gastroenteritis Section/Division of
Viral and Rickettsial Diseases/National Center for Infectious
Diseases, Centers for Disease Control and Prevention, 1600 Clifton
Road, Atlanta, GA 30333, USA
FEATURES Location/Qualifiers
source 1..3244
/organism="Norwalk-like virus NLV/Saint Cloud/624/1998/US"
/mol_type="genomic RNA"
/strain="Hu/NLV/Saint Cloud/624/1998/US"
/db_xref="taxon:171859"
/note="derived from human stool collected in outbreak
No.624; NLV/624;
group: GIV/1"
gene <1..787
/gene="orf1"
CDS <1..787
/gene="orf1"
/note="nonstructural protein"
/codon_start=2
/product="RNA polymerase"
/protein_id="AAL13033.1"
/translation="QQREVLAAALGIMTKFTAEPQLASVVAEDLISPSMLDVGDYVVQ
VNEGLPSGVPCTSQLNSIAHWIITLTSMAEATGLDPDIVQANSYFSFYGDDEIVSTDI
KFNPEVLTLKLKAIGLVPTRPDKTEGPLVVSNKLEGLTFLRRTITRDKVGFFGRLDKD
SILRQMYWTKGPNHQDPSESMLPHQNRATQLMALLGESALHGQNFYKKISGMVIKEVK
TGGHEFYVPKFESMYKWMRFSDLSTWEGDRDLAPDFVNEDGVE"
gene 768..2438
/gene="orf2"
CDS 768..2438
/gene="orf2"
/note="major structural protein"
/codon_start=1
/product="capsid protein"
/protein_id="AAL13034.1"
/translation="MKMASSDAAPSADGAGNLVPESQQEVLPLAPVAGAALAAPVVGQ
TNIIDPWIKENFVQAPQGEFTVSPKNSPGEILVNLELGPKLNPYLDHLSRMYNSYAGG
IDVMVVLAGNAFTAGKVLIAAIPPNFPVEGVSASQATQFPHVIIDVRTLDPVRLPLPD
VRSTFFHYTNDTEPKMRLVIWLYTPLRTNGSGDDSFTVSGRILTRPSQDFEFAFLIPP
TVETKTTPFSVPGFSVQEMSNSRWPAAISAMVVRGNEPQVVQFQNGRAHLDGMLLGTT
PVSPNYIASYRGISTGNSRSASTEADERAVGSFDVWIRLQEPDGQPYDIFGKQPAPIG
TPDFKAVIVGFAARPLTSGSYANEAYVNTTASDYAPATGNMRFTVRNGGSGHISANKY
WEFKSFGVEGERHTDIQYQEYELPDYSGQVASNHNLAPPVAPRMPGESLLLFQSNMPV
WDDGHGESTPKKIHCLLPQEFIGHFFDKQAPSLGDAALLRYVNQETNRVLFECKLYRD
GYITVAASSGLLDFPLDGFFRFDSWVSSFYILSPVGSGQGRRGRVRFQ"
gene 2438..3166
/gene="orf3"
CDS 2438..3166
/gene="orf3"
/codon_start=1
/product="minor structural protein"
/protein_id="AAL13035.1"
/translation="MASSIMAGIAGDVLGSVVGGLIGAGANAINQSVEFGYNQALQSN
AFQHDKDMLAMQVAATRQLQSDLINLREQVLRKGGFSDTDAARGAIGAPMSRLVDWNG
TRLSAPGSMHTTSYSGRFVGTTRQQPHFSPSPQVNHVRADDGVSSVSSLPTAVTSVPS
SRTAEWVHNQRQLSSWGSSASQYSQLEPFHPNALRVAWGSTPSSSSKASTVDGSIIDS
WTPAFNLKHQPFFARFHPRGASNV"
3'UTR 3167..3244
ORIGIN
1 ccaacaacga gaagtcctcg ccgctgcact cggcatcatg acaaaattca ccgctgagcc
61 acaattggcc tctgttgtgg ctgaagactt gatttcccct agcatgcttg atgttggcga
121 ctatgtcgtc caggtcaacg aggggttacc ctccggtgtt ccttgcacct cacagttaaa
181 cagcattgcc cattggatca tcactctcac atccatggcc gaggccactg gcttggaccc
241 tgacatcgtc caggctaata gctacttttc cttctatggt gatgatgaga ttgtgtcaac
301 agatataaag ttcaacccag aagtcctcac tctgaagctt aaagcaattg gcctcgtccc
361 aacacgccca gacaaaacag agggcccatt ggtggtgtct aataagctag aagggttgac
421 attcctgagg cgcaccataa ctagagataa agtgggcttc tttggtcggc tggataagga
481 ctccatcctc agacaaatgt actggaccaa gggcccgaat catcaagacc catctgaaag
541 tatgctgccc caccagaatc gcgccacaca attgatggcc ctattgggcg agtcagctct
601 ccatggtcag aatttctaca aaaagatcag tggcatggtt atcaaagaag tgaagactgg
661 tgggcatgag ttttatgtgc caaagtttga gtctatgtac aagtggatgc gattctcaga
721 cctgagcact tgggaggggg atcgcgatct cgctcccgat tttgtgaatg aagatggcgt
781 cgagtgacgc tgctccatct gcggatggtg cgggcaacct cgtcccagag agtcaacaag
841 aggtattgcc cctcgccccc gttgcgggcg ctgcactagc ggcacccgta gtggggcaga
901 caaacataat tgacccctgg attaaagaaa attttgttca agccccccaa ggtgagttta
961 cagtctcacc taaaaactct cctggtgaaa ttttagtcaa tttggaattg ggacccaaac
1021 tcaaccccta tctggatcac ctttcacgta tgtacaattc atatgctggt ggtatagatg
1081 ttatggtggt gttggcgggt aacgccttca cagccggtaa ggttctaata gcagccattc
1141 ccccaaattt tccagtagaa ggagtgtccg cctcccaggc cactcagttc ccccatgtga
1201 tcatagatgt tagaacactt gaccctgtgc gtcttccact cccagacgtg cgatctacat
1261 tcttccatta caccaatgac actgaaccaa aaatgaggtt ggttatttgg ctctataccc
1321 cacttagaac taatggcagt ggtgatgatt ctttcaccgt ctctgggcgc atactcacaa
1381 ggccctccca ggattttgag tttgcattcc ttattccccc aacagtggaa acaaagacaa
1441 cccccttttc agtgccaggc ttctcagtgc aggagatgtc caactctagg tggccggccg
1501 ccatctctgc gatggttgtc cgaggaaatg agcctcaggt tgtccagttc cagaatggta
1561 gggcccacct ggatggtatg ttacttggta cgacacccgt gtcgcccaac tacatagcat
1621 cctatcgagg tatttccacc ggcaactctc gctctgcctc cactgaggcc gacgagaggg
1681 ctgttggcag cttcgatgtg tggatccgct tacaagaacc tgatggacag ccctatgaca
1741 tctttggcaa gcagccagcc ccaattggca cccctgactt caaggccgtg atagttggtt
1801 ttgcagccag gccccttaca tccgggtcct acgcaaatga agcgtatgtt aacaccacag
1861 ccagtgacta tgccccagcc actggtaaca tgcgcttcac ggtcaggaat ggtggatccg
1921 ggcacatatc tgcaaacaaa tactgggagt tcaaatcatt tggtgttgaa ggagagaggc
1981 acactgatat ccagtatcag gagtacgagc ttcctgatta ctctggccag gttgcttcca
2041 accacaacct ggcccccccc gtggccccac gcatgcctgg tgagtctcta ttgcttttcc
2101 aatcaaatat gcctgtgtgg gacgatgggc atggtgagtc cacacccaag aagatccact
2161 gcctgctgcc acaagaattc attggccact tctttgataa acaggccccc tccctaggtg
2221 atgctgcatt gctcaggtat gtcaatcaag agacaaacag ggtgctgttt gagtgcaaac
2281 tttataggga tggttacatc actgttgctg catcatcagg gttgctagat ttccccttgg
2341 atggattctt taggtttgat tcttgggtta gttctttcta cattttatcc cctgtgggaa
2401 gcggccaagg ccgaaggggt agagtgaggt ttcaataatg gcttctagca tcatggcagg
2461 aatagctggc gatgtgctag gctcagttgt gggtgggttg atcggagctg gcgccaacgc
2521 cataaatcaa tctgttgaat ttggatacaa ccaagcacta caatctaatg ctttccaaca
2581 tgataaagac atgctcgcca tgcaggtggc cgcgacccgt cagctacagt cggacttgat
2641 caacttgcgc gagcaggttc ttcgcaaggg tggtttctcc gacactgacg cggcgcgtgg
2701 agctattggt gcccccatgt cgcgtcttgt ggactggaat ggcacaagac tgtccgcccc
2761 gggttccatg catacaacat catactcggg tcggttcgtc ggcactacca ggcaacaacc
2821 tcacttttcc ccctccccgc aggttaatca tgttagggct gatgatggag tctcctctgt
2881 ttcttctcta ccaactgcgg tgacctcagt tcccagctct aggacagccg agtgggttca
2941 caatcaaagg cagttgtctt cctggggatc tagtgcatct caatattctc aattagaacc
3001 ctttcaccca aacgctctga gggtagcttg ggggtctact ccgagttcct cttctaaagc
3061 gtccaccgta gatggctcaa ttattgattc atggacacct gcttttaatc tgaaacatca
3121 acccttcttt gctcgtttcc acccgagggg tgcttctaat gtttagtcaa ctgctcacta
3181 atgagtggtt gtaagttttg taatctgtga aatgtagatt ctttgattaa ttgaattggc
3241 atgc
//