Typing tool
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Typing tool
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Complete norovirus genomes
| AF414426 | GIV.1 | |
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| GIV.P1 |
ORF1: 1..819
ORF2: 800..2470
ORF3: 2470..3198
LOCUS AF414426 3276 bp ss-RNA linear VRL 26-JUL-2016
DEFINITION Norwalk-like virus NLV/Fort Lauderdale/560/1998/US RNA polymerase
(orf1) gene, partial cds; and capsid protein (orf2) and minor
structural protein (orf3) genes, complete cds.
ACCESSION AF414426
VERSION AF414426.1
KEYWORDS .
SOURCE Norwalk-like virus NLV/Fort Lauderdale/560/1998/US
ORGANISM Norwalk-like virus NLV/Fort Lauderdale/560/1998/US
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3276)
AUTHORS Fankhauser,R.L., Monroe,S.S., Noel,J.S., Humphrey,C.D.,
Bresee,J.S., Parashar,U.D., Ando,T. and Glass,R.I.
TITLE Epidemiologic and molecular trends of 'Norwalk-like viruses'
associated with outbreaks of gastroenteritis in the United States
JOURNAL J. Infect. Dis. 186 (1), 1-7 (2002)
PUBMED 12089655
REFERENCE 2 (bases 1 to 3276)
AUTHORS Fankhauser,R.L., Noel,J.S., Monroe,S.S., Glass,R.I. and Ando,T.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2001) Viral Gastroenteritis Section/Division of
Viral and Rickettsial Diseases/National Center for Infectious
Diseases, Centers for Disease Control and Prevention, 1600 Clifton
Road, Atlanta, GA 30333, USA
FEATURES Location/Qualifiers
source 1..3276
/organism="Norwalk-like virus NLV/Fort
Lauderdale/560/1998/US"
/mol_type="genomic RNA"
/strain="Hu/NLV/Fort Lauderdale/560/1998/US"
/db_xref="taxon:171858"
/note="derived from human stool; NLV/560;
group: GIV/1"
gene <1..819
/gene="orf1"
CDS <1..819
/gene="orf1"
/note="nonstructural protein"
/codon_start=1
/product="RNA polymerase"
/protein_id="AAL13030.1"
/translation="YDADYSRWDSTQQREVLAAALGIMTKFTAEPQLASVVAEDLISP
SMLDVGDYVVQVNEGLPSGVPCTSQLNSIAHWIITLTSMAEATGLDPDIVQANSYFSF
YGDDEIVSTDIKFNPEVLTLKLKAIGLVPTRPDKTEGPLVVSNKLEGLTFLRRTITRD
KVGFFGRLDKDSILRQMYWTKGPNHQDPSESMLPHQNRATQLMALLGESALHGQNFYK
KISGMVIKEVKNGGHEFYVPKFESMYKWMRFSDLSTWEGDRDLAPDFVNEDGVE"
gene 800..2470
/gene="orf2"
CDS 800..2470
/gene="orf2"
/note="major structural protein"
/codon_start=1
/product="capsid protein"
/protein_id="AAL13031.1"
/translation="MKMASSDAAPSTDGAGNLVPESQQEVLPLAPVAGAALAAPVVGQ
TNIIDPWIKENFVQAPQGEFTVSPKNSPGEILVNLELGPKLNPYLDHLSRMYNSYAGG
IDVMVVLAGNAFTAGKVLIAAIPPNFPVEGVSASQATQFPHVIIDVRTLDPVRLPLPD
VRSTFFHYTNDTEPKMRLVIWLYTPLRTNGSGDDSFTVSGRILTRPSQDFEFAFLIPP
TVETKTTPFSVPGFSVQEMSNSRWPAAISAMVVRGNEPQVVQFQNGRAHLDGMLLGTT
PVSPNYIASYRGISTGNSRSASSEADERAVGSFDVWVRLQEPDGQPYDIFGKQPAPIG
TPDFKAVIVGFAARPLTSGSYANEAYVNTTASDYAPATGNMRFTVRNGGTGHISANKY
WEFKSFGVEGKRHTSIQYQEYELPDYSGQVASNHNLAPPVAPRMPGESLLLFQSNMPV
WDDGHGESTPKKIHCLLPQEFIGHFFDKQAPSLGDAALLRYVNQETNRVLFECKLYRD
GYITVAASSGLLDFPLDGFFRFDSWVSSFYILSPVGSGQGRRGRVRFQ"
gene 2470..3198
/gene="orf3"
CDS 2470..3198
/gene="orf3"
/codon_start=1
/product="minor structural protein"
/protein_id="AAL13032.1"
/translation="MASSIMAGIAGDVLGSVVGGLVGAGANAINQSVEFGYNQALQSN
AFQHDKDMLALQVAATRQLQSDLINLREQVLRKGGFSDTDAARGAIGAPMSRLVDWNG
TRLSAPGSMHTTSYSGRFVGTTRQQPHFIPSLQTNHVRVDDEASSVSSLPTTVTSVPS
SRTVDWVHSQRQLSSWGSSASQHSQLEPFHPNALRVAWGSTPSSSSRASTVDGSVIDS
WTPAFNLKHQPFFARFHPRGASNV"
3'UTR 3199..3276
ORIGIN
1 tatgatgcag attattcgcg gtgggattct acccagcaac gggaggttct cgccgccgca
61 cttggcatca tgacaaaatt caccgctgag ccacaactgg cctctgtcgt agcagaagac
121 ttgatttctc caagtatgct tgacgttggc gactatgtcg tccaggtcaa tgaagggctg
181 ccctctggtg ttccctgcac ttcacaatta aacagtattg cccattggat catcactctc
241 acatccatgg ctgaggccac tggcctggac cctgacatcg tccaggctaa cagttacttt
301 tctttctatg gtgatgatga gattgtgtca acagatataa aattcaaccc agaagtcctc
361 accctgaagc ttaaagcaat tggccttgtc ccaacccgcc cagacaagac tgagggccca
421 ctggtggtgt ctaacaagtt agaagggctg acttttctga ggcgcaccat aactagagac
481 aaggtgggct tctttggtcg gctggataag gattccattc ttaggcaaat gtactggacc
541 aagggcccga accatcaaga cccatctgaa agcatgttac cccaccagaa tcgcgctaca
601 caattgatgg ccctattggg cgagtcagca ctccacggcc aaaacttcta caaaaagatc
661 agtggcatgg taatcaaaga agtgaagaat ggtgggcatg agttttatgt gccaaagttt
721 gagtccatgt acaagtggat gcggttctca gatttgagca cttgggaggg ggatcgcgat
781 ctcgctcccg attttgtgaa tgaagatggc gtcgagtgac gctgctccat ctacggatgg
841 tgcgggcaac ctcgttccag agagtcaaca agaggtattg cccctcgccc cagttgcagg
901 cgctgcacta gcggcacctg tggtggggca gacaaatata attgacccct ggattaaaga
961 aaactttgtt caagcccctc agggtgagtt tactgtctca cctaaaaatt ctcctggtga
1021 aattttagtt aatttggaat tgggacccaa actcaaccct tatctagacc acctttcacg
1081 tatgtacaat tcatatgctg gtggcataga tgtcatggta gtgttggcgg gcaacgcctt
1141 cacagccggc aaggttttaa tagcagctat ccccccaaat tttccagtgg aaggagtgtc
1201 cgcttcacag gccactcaat ttccccatgt gattatagat gttaggacac ttgaccctgt
1261 gcggcttccc ctcccggatg tgcgatccac attcttccat tacaccaatg atactgaacc
1321 aaaaatgagg ttagttattt ggctttacac cccactcaga actaatggca gtggtgatga
1381 ttctttcacc gtctctgggc gcatactcac aaggccctcc caggattttg aatttgcttt
1441 ccttatccct ccaacagtgg aaacaaagac aacccccttt tcagtgccgg gcttctcagt
1501 gcaagaaatg tccaactcaa ggtggccagc tgccatctct gcaatggtcg tccgtgggaa
1561 tgagccccaa gttgttcagt tccagaatgg tagggcccat ctggatggta tgctgcttgg
1621 cacgacaccc gtgtcgccta actacatagc atcctaccga ggcatttcca ctggtaactc
1681 tcgctctgct tcctctgagg ctgacgagag ggccgttggt agttttgatg tgtgggtccg
1741 cttacaagaa cctgatggcc agccctatga catctttggt aagcagccag ccccaattgg
1801 cacccctgat ttcaaggccg tgatagttgg ctttgcagct aggcccctca catccgggtc
1861 ctacgcaaat gaagcgtatg tcaacaccac agccagtgac tacgccccag ccactggtaa
1921 tatgcgcttc acagtcagga acggcgggac cgggcacata tctgcaaata aatactggga
1981 gttcaaatca tttggcgttg agggaaaaag gcacactagt atccagtacc aggagtatga
2041 acttcccgat tattctggtc aagttgcttc caaccataat ctggcccccc ctgtagcccc
2101 acgcatgcct ggtgagtccc tattgctttt ccaatcaaat atgcctgtgt gggatgatgg
2161 gcatggagag tccacaccca agaagatcca ttgcctgttg ccacaggagt tcattggcca
2221 tttctttgac aagcaagccc cctccctagg tgatgctgca ctacttaggt atgtcaacca
2281 ggagacaaat agagtgttgt ttgagtgtaa actttataga gatggttaca tcacagttgc
2341 tgcatcatca ggattattgg atttcccctt ggatggattc tttaggtttg attcttgggt
2401 tagttctttt tatattttat cccccgtggg aagcggccaa ggccgtaggg gtagagtgag
2461 gtttcaataa tggcttctag cattatggca ggtatagcag gcgatgtgct aggatcagtt
2521 gtgggtggac tagtcggagc cggcgctaac gccataaatc agtctgttga atttgggtac
2581 aaccaagcac tgcaatctaa tgctttccaa catgataaag acatgcttgc cttgcaggtg
2641 gccgcgaccc gtcagctaca gtcggatttg atcaacttgc gcgagcaggt tcttcgcaag
2701 ggtggtttct ccgacactga tgcggcgcgt ggagccattg gtgcccccat gtcacgcctt
2761 gtggattgga atggcacaag gttgtccgcc ccgggttcca tgcacacaac atcatactcg
2821 ggtcggtttg ttggcactac cagacagcag ccccacttca ttccctccct acaaactaat
2881 catgttagag ttgatgatga agcttcttct gtttcttctt tgcctactac ggtgacttca
2941 gtccctagtt ctaggacagt tgattgggtt catagccaaa ggcaactgtc ctcctggggt
3001 tctagtgcat cccaacactc acagctggaa cccttccatc caaacgctct gagagtagcc
3061 tgggggtcta ctccgagttc ctcctccaga gcgtccactg tggatggctc agttattgat
3121 tcatggacac ccgctttcaa tctgaaacac cagcctttct ttgctcgttt tcacccgagg
3181 ggtgcttcta atgtttagtc aacaactcac taatgagtag ttgtgagttt tgtaatctgt
3241 gaaatgtaga ttctttgatt aactgaattg gcatgc
//