Typing tool
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Typing tool
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Complete norovirus genomes
| AF414423 | GII.5 | |
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| GII.P5 |
ORF1: 1..591
ORF2: 572..2194
ORF3: 2194..2970
LOCUS AF414423 3005 bp ss-RNA linear VRL 26-JUL-2016
DEFINITION Norwalk-like virus NLV/White River/290/1994/US RNA polymerase
(orf1) gene, partial cds; and capsid protein (orf2) and minor
structural protein (orf3) genes, complete cds.
ACCESSION AF414423
VERSION AF414423.1
KEYWORDS .
SOURCE Norwalk-like virus NLV/White River/290/1994/US
ORGANISM Norwalk-like virus NLV/White River/290/1994/US
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3005)
AUTHORS Ando,T., Monroe,S.S., Noel,J.S. and Glass,R.I.
TITLE A one-tube method of reverse transcription-PCR to efficiently
amplify a 3-kilobase region from the RNA polymerase gene to the
poly(A) tail of small round-structured viruses (Norwalk-like
viruses)
JOURNAL J. Clin. Microbiol. 35 (3), 570-577 (1997)
PUBMED 9041391
REFERENCE 2 (bases 871 to 1147)
AUTHORS Noel,J.S., Ando,T., Leite,J.P., Green,K.Y., Dingle,K.E.,
Estes,M.K., Seto,Y., Monroe,S.S. and Glass,R.I.
TITLE Correlation of patient immune responses with genetically
characterized small round-structured viruses involved in outbreaks
of nonbacterial acute gastroenteritis in the United States, 1990 to
1995
JOURNAL J. Med. Virol. 53 (4), 372-383 (1997)
PUBMED 9407386
REFERENCE 3 (bases 1 to 3005)
AUTHORS Ando,T., Noel,J.S. and Fankhauser,R.L.
TITLE Genetic classification of 'Norwalk-like viruses.
JOURNAL J. Infect. Dis. 181 (Suppl 2), S336-S348 (2000)
PUBMED 10804147
REFERENCE 4 (bases 1 to 3005)
AUTHORS Ando,T., Seto,Y., Noel,J.S., Monroe,S.S., Glass,R.I. and
Fankhauser,R.L.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2001) Viral Gastroenteritis Section/Division of
Viral and Rickettsial Diseases/National Center for Infectious
Diseases, Centers for Disease Control and Prevention, 1600 Clifton
Road, Atlanta, GA 30333, USA
FEATURES Location/Qualifiers
source 1..3005
/organism="Norwalk-like virus NLV/White River/290/1994/US"
/mol_type="genomic RNA"
/strain="Hu/NLV/White River/290/1994/US"
/db_xref="taxon:171855"
/clone="pYS22A"
/note="NLV/290; NLVS22;
group: GII/5"
gene <1..591
/gene="orf1"
CDS <1..591
/gene="orf1"
/note="nonstructural protein"
/codon_start=1
/product="RNA polymerase"
/protein_id="AAL13021.1"
/translation="LLTLCALSETTNLSPDIIQANSMFSFYGDDKIVSTDIKLDPEKL
TIKLREYGLKPTRPDKTEGPLIISEDLDGLTFLRRTVSRDPAGWFGKLDQSSILRQMY
WTRGPNHEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFY
VPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 572..2194
/gene="orf2"
CDS 572..2194
/gene="orf2"
/note="major structural protein"
/codon_start=1
/product="capsid protein"
/protein_id="AAL13022.1"
/translation="MKMASNDATPSNDGAAGLVPESNNEAMALEPVVGASLAAPVTGQ
TNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILVNLESGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKIIFAAVPPYFPVENLSPSQITMFPHVIIDVRTLEPVLLPMPD
VRSTPFHFNQKDEPKMRLVAMLYTPLRSNGSGDDVFTVSCRILTRPSPEFDFTYLVPP
TVESKTKPFTLPVLTLGELSNSRFPLSIDEMVTSPNESIVVQPQNGRVTLDGGLLGTT
QLQACNICSIRGKVTGQVPSEQHMWNLEITNLNGTQFDPTDDVPAPLGVPDFAGEVFG
VLSQRNRGESNSANRAHDAVVATYSDKYTPKLGLVQIGTWNTNDVENQPTKFTPIGLN
GVANGHRFEQWTLPRYSGALTLNMNLAPAVAPLFPGERLLFFRSYVPLKGGFGNPAID
CLVPQEWVQHFYQESAPSLGDVALVRYVNPDTGRVLFEAKLHKGGFLTVSSTSTGPVV
VPANGYFRFDSWVNQFYSLAPMGTGNGRRRFQ"
gene 2194..2970
/gene="orf3"
CDS 2194..2970
/gene="orf3"
/codon_start=1
/product="minor structural protein"
/protein_id="AAL13023.1"
/translation="MAGAFIAGLAGDVLSNGLGSLINAGANAINQRAEFDFNRQLQQN
SFNHDKEMLSAQIQATKQLQADMIAIKQGVLAAGGFSPTDAARGAVNAPMTQALDWSG
TRYWAPGSMKTTSYSGKFVSMNPVRQVEFPQPKKSAAIPSSASSVSSGRTNLTNSTQS
TVVSTSSVPPSRGSFAPSTLSRATTRTSNWVEEQNRNLEPYMRGALQTTFVTPPSSRA
SSNGTVSTVPKGVLDSWTPAFNTRRQPLFAYLRKKGESQV"
3'UTR 2971..3005
ORIGIN
1 cttctaactc tctgtgctct gtctgaaacc accaacctgt ctcctgacat catacaggca
61 aactccatgt tctcattcta tggtgatgac aagatcgtta gcaccgatat aaaattggac
121 ccagaaaaat tgaccataaa attgagagag tatggtttga aaccgacccg tccggataaa
181 acagaaggac ctctaatcat tagtgaggat ttggatggac tcaccttcct ccgaagaaca
241 gtctcccgtg atccagctgg ttggtttggg aaactggatc aaagttcaat actcaggcaa
301 atgtactgga ccagaggacc caaccatgaa gaccccaatg aaacaatgat acctcactct
361 cagaggccca tacaactcat ggccctactt ggtgaagcct ctctacacgg accctctttt
421 tacagcaaaa ttagcaaatt ggtcataact gaactcaagg aaggtggaat ggatttttac
481 gtgccaagac aagagcctat gttcaggtgg atgagattct ctgacttgag cacgtgggag
541 ggcgatcgca atctggctcc cagttttgtg aatgaagatg gcgtcgaatg acgctactcc
601 atcaaatgat ggtgccgccg gcctcgtgcc agaaagtaat aatgaggcaa tggctctgga
661 acccgtggtg ggggcgtctt tagccgcccc tgtcactggc caaactaata taatagaccc
721 ctggattaga actaactttg ttcaagcccc taatggtgaa ttcacagttt cccctagaaa
781 ttcccctgga gagatattgg tcaatttgga gtcgggtcca gaactgaacc cttatctggc
841 acatttagct aggatgtaca atggttatgc gggtggtatg gaggtgcaag tgatgctcgc
901 ggggaacgcg ttcactgctg gcaagatcat ctttgccgcc gtgccacctt actttccagt
961 ggaaaatctt agcccttccc aaataacaat gttcccacat gtgatcatcg atgttagaac
1021 cttggaacct gtattgctcc caatgcctga tgtcagaagc accccttttc acttcaatca
1081 aaaggatgaa cctaagatga gacttgttgc catgctttac acccctctcc gttctaatgg
1141 ttctggtgac gacgttttca ccgtctcatg taggatcctc actaggccct cccctgaatt
1201 tgattttaca tatttggtgc caccaacagt ggaatcaaag actaagccat tcacactacc
1261 tgtgctgaca ctgggagaac tgtccaactc tagatttcct ctctctattg atgaaatggt
1321 caccagcccc aatgagtcca tagttgttca gccacagaat ggtagggtca cactagatgg
1381 ggggctgtta ggcacaaccc aactgcaagc atgcaacatt tgctccataa gggggaaggt
1441 gacagggcag gtccctagtg aacaacacat gtggaacctg gagatcacaa acctaaatgg
1501 gacgcaattt gatcctacag atgatgtccc agcccccctt ggtgtgcctg attttgcagg
1561 tgaggtcttt ggtgtactca gccagagaaa tagaggtgaa agcaactcag caaacagggc
1621 tcatgatgct gtcgtggcta cctacagtga caagtacacc cctaaattgg gcttagtgca
1681 aattggaact tggaacacca atgatgttga aaaccagcca acaaaattca ccccaattgg
1741 tttgaatggg gtcgccaatg gccatcgatt tgaacagtgg actttgccta ggtattctgg
1801 tgccctgaca ttaaatatga atttagcccc tgctgtggcc ccgctctttc ctggagagcg
1861 tctccttttc ttccgctctt acgtcccttt aaaaggtgga tttggaaacc ctgctataga
1921 ttgtctggtg cctcaggagt gggtccaaca tttctatcag gaatctgccc cctctctggg
1981 ggatgtggcc ttagtcaggt acgtcaaccc agacaccggg cgcgtccttt ttgaggccaa
2041 actccacaaa ggtgggttcc tgactgtgtc aagtactagc acagggcctg ttgtggttcc
2101 agccaatggc tatttcagat ttgactcctg ggttaaccaa ttttactctc ttgcccccat
2161 gggaactggg aatgggcgca gaaggtttca gtaatggcag gagctttcat agcaggttta
2221 gcaggtgatg tgcttagtaa tggcctcggt tcgctgatta atgccggagc caatgctatc
2281 aatcaaagag cagagtttga ttttaatagg caattgcaac aaaattcttt caatcatgat
2341 aaagagatgt taagtgccca aattcaagca acaaaacagt tgcaggctga tatgatagca
2401 atcaaacagg gagtcctagc tgctgggggt ttctcaccaa ctgatgcagc cagaggggct
2461 gtcaatgcac ccatgaccca agcactagat tggagtggca ctaggtactg ggcccctggt
2521 tcaatgaaga ccaccagcta ttctggaaag tttgtatcca tgaatcctgt taggcaggtt
2581 gagttcccgc agcccaagaa gagtgcggcc ataccatcaa gcgccagctc tgtgtcttct
2641 ggtaggacca atttgacaaa ttccacccaa tcaactgttg ttagtacttc ctcagtgcca
2701 ccttctaggg gctcttttgc cccttctacc ctgtcaaggg ccacaactag aacttccaat
2761 tgggttgagg aacaaaacag gaatttggaa ccctacatga ggggtgccct tcaaacaaca
2821 tttgtcaccc ccccttccag ccgggcgtct agcaatggaa cagtctcaac tgtaccaaaa
2881 ggtgttttgg actcctggac acctgcgttt aacacccgca ggcagccgct tttcgcttac
2941 cttcgtaaga agggggagtc acaagtttag tgaaaagata attaatgatt aataattgat
3001 ctagt
//