Typing tool
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Typing tool
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Complete norovirus genomes
| AF414422 | GII.5 | |
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| GII.P5 |
ORF1: 1..591
ORF2: 572..2194
ORF3: 2194..2970
LOCUS AF414422 3005 bp ss-RNA linear VRL 26-JUL-2016
DEFINITION Norwalk-like virus NLV/New Orleans/306/1994/US RNA polymerase
(orf1) gene, partial cds; and capsid protein (orf2) and minor
structural protein (orf3) genes, complete cds.
ACCESSION AF414422
VERSION AF414422.1
KEYWORDS .
SOURCE Norwalk-like virus NLV/New Orleans/306/1994/US
ORGANISM Norwalk-like virus NLV/New Orleans/306/1994/US
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3005)
AUTHORS Ando,T., Monroe,S.S., Noel,J.S. and Glass,R.I.
TITLE A one-tube method of reverse transcription-PCR to efficiently
amplify a 3-kilobase region from the RNA polymerase gene to the
poly(A) tail of small round-structured viruses (Norwalk-like
viruses)
JOURNAL J. Clin. Microbiol. 35 (3), 570-577 (1997)
PUBMED 9041391
REFERENCE 2 (bases 871 to 1147)
AUTHORS Noel,J.S., Ando,T., Leite,J.P., Green,K.Y., Dingle,K.E.,
Estes,M.K., Seto,Y., Monroe,S.S. and Glass,R.I.
TITLE Correlation of patient immune responses with genetically
characterized small round-structured viruses involved in outbreaks
of nonbacterial acute gastroenteritis in the United States, 1990 to
1995
JOURNAL J. Med. Virol. 53 (4), 372-383 (1997)
PUBMED 9407386
REFERENCE 3 (bases 1 to 3005)
AUTHORS Ando,T., Noel,J.S. and Fankhauser,R.L.
TITLE Genetic classification of 'Norwalk-like viruses.
JOURNAL J. Infect. Dis. 181 (Suppl 2), S336-S348 (2000)
PUBMED 10804147
REFERENCE 4 (bases 1 to 3005)
AUTHORS Ando,T., Seto,Y., Noel,J.S., Monroe,S.S., Glass,R.I. and
Fankhauser,R.L.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2001) Viral Gastroenteritis Section/Division of
Viral and Rickettsial Diseases/National Center for Infectious
Diseases, Centers for Disease Control and Prevention, 1600 Clifton
Road, Atlanta, GA 30333, USA
FEATURES Location/Qualifiers
source 1..3005
/organism="Norwalk-like virus NLV/New Orleans/306/1994/US"
/mol_type="genomic RNA"
/strain="Hu/NLV/New Orleans/306/1994/US"
/db_xref="taxon:171854"
/clone="pYS21A"
/note="NLV/306; NLV/S21;
group: GII/5"
gene <1..591
/gene="orf1"
CDS <1..591
/gene="orf1"
/note="nonstructural protein"
/codon_start=1
/product="RNA polymerase"
/protein_id="AAL13018.1"
/translation="LLTLCALSETTNLSPDIIQANSMFSFYGDDEIVSTDIKLDPEKL
TTKLREYGLKPTRPDKTEGPLIISEDLDGLTFLQRTVSRDPAGWFGKLGQSSILRQMY
WTRGPNHEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFY
VPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 572..2194
/gene="orf2"
CDS 572..2194
/gene="orf2"
/note="major structural protein"
/codon_start=1
/product="capsid protein"
/protein_id="AAL13019.1"
/translation="MKMASNDATPSNDGAAGLVPESNNEAMALEPVVGASLAAPVTGQ
TNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILVNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKIIFAAVPPYFPVENLSPSQITMFPHVIIDVRTLEPVLLPMPD
VRSTLFHFNQKDEPKMRLVAMLYTPLRSNGSGDDVFTVSCRILTRPSPEFDFTYLVPP
TVESKTKPFTLPVLTLGELSNSRFPLSIDEMVTSPNESIVVQPQNGRVTLDGELLGTT
QPQACNICSIRGKVTGQVPNEQHTWNLEITNLNGTQFDPTDDVPAPLGVPDFAGEVFG
VLSQRNRGESNPANRAHDAVVATYSDKYTPKLGLVQIGTWNTNDVENQPTKFTPIGLN
EVANGHRFEQWTLPRYSGALTLNMNLAPAVAPLFPGERLLFFRSYVPLKGGFGNPAID
CLVPQEWVQHFYQESAPSLGDVALVRYVNPDTGRVLFEAKLHKGGFLTVSSTSTGPVV
VPANGYFGFDSWVNQFYSLAPMGTGNGRRRFQ"
gene 2194..2970
/gene="orf3"
CDS 2194..2970
/gene="orf3"
/codon_start=1
/product="minor structural protein"
/protein_id="AAL13020.1"
/translation="MAGAFIAGLAGDVLSNGLGSLINAGANAINQRAEFDFNRQLQQN
SFNHDKEMLSAQIQATKQLQADMIAIKQGVLAAGGFSPTDAARGAVNAPMTQALDWSG
TRYWAPGSMKTTSYSGKFVSMNPVRQVEFPQPKKSAAIPSSASSVSSGRTNLTNSTQS
TVVSTSSAPPSRGSSAPSTLSRATTRTSNWVEEQNRNLEPYMRGALQTTFVTPPSSRA
SSNGTVSTVPKGVLDSWTPAFNTRRQPLFAYLRKKGESQV"
3'UTR 2971..3005
ORIGIN
1 cttctaactc tctgtgctct gtctgaaacc accaacctgt ctcctgacat catacaggca
61 aattccatgt tctcattcta tggtgatgac gagatcgtta gcaccgatat aaaattggac
121 ccagaaaaat tgaccacaaa gttgagagag tatggtttga aaccgacccg tccggataaa
181 acagaaggac ctctaatcat tagtgaggat ttggatggac ttaccttcct ccaaagaaca
241 gtctcccgtg atccagctgg ttggtttggg aaattgggtc aaagttcaat actcaggcaa
301 atgtactgga ccagaggacc caatcatgaa gaccccaatg aaacaatgat acctcactct
361 cagaggccca tacaactcat ggccctactt ggtgaagcct ctctacacgg accctctttc
421 tacagcaaaa ttagcaaatt ggtcataact gagctcaagg aaggtggaat ggatttttac
481 gtgccaagac aagagcctat gttcaggtgg atgagattct ctgacttgag cacgtgggag
541 ggcgatcgca atctggctcc cagttttgtg aatgaagatg gcgtcgaatg acgctactcc
601 atcaaatgat ggtgccgccg gcctcgtgcc agaaagtaac aatgaggcaa tggctctgga
661 acccgtggtg ggggcgtctt tagccgcccc tgtcactggc caaactaata taatagaccc
721 ctggattaga actaactttg tccaagcccc taatggtgaa ttcacagttt cccctagaaa
781 ttcccctgga gagatattgg tcaatttgga gttgggtcca gaactgaacc cttatctggc
841 acatttagct aggatgtaca atggttatgc gggtggtatg gaggtgcaag tgatgctcgc
901 ggggaacgcg ttcactgctg gcaagatcat ctttgccgcc gtgccacctt actttccagt
961 ggaaaatctt agcccctccc aaataacaat gttcccacat gtgatcattg atgttagaac
1021 cttggaacct gtattgctcc caatgcctga tgtcagaagc accctttttc acttcaatca
1081 aaaggatgaa cctaaaatga gacttgttgc catgctttac acccctcttc gttctaatgg
1141 ctctggtgac gacgttttca ccgtctcatg tagaatcctc actaggccct cccctgaatt
1201 tgattttaca tatttggtgc caccaacagt ggaatcaaag actaagccat tcacactacc
1261 tgtgctaaca ctgggagaac tgtccaactc tagatttcct ctctctattg atgaaatggt
1321 caccagcccc aatgagtcca tagttgtcca gccacagaat ggtagggtca cactagatgg
1381 agagctgtta ggcacaaccc aaccgcaagc atgcaacatt tgctccataa gggggaaggt
1441 gacagggcag gtccccaatg aacaacacac gtggaacctg gagatcacaa acctaaatgg
1501 gacgcaattt gaccctacag atgatgtccc agcccccctt ggtgtgcccg attttgcagg
1561 tgaggtcttt ggtgtactca gccagagaaa taggggtgaa agcaacccag caaacagggc
1621 tcatgacgct gtcgtggcca cctacagtga caagtacacc cctaaattgg gcttagtgca
1681 aattggaact tggaacacca atgatgttga aaaccagcca acaaaattca ccccaattgg
1741 tttgaatgag gtcgccaatg gccatcgatt tgaacagtgg actttgccta ggtattctgg
1801 tgccctgaca ttaaatatga atttagcccc tgctgtggcc ccgctctttc ctggagagcg
1861 tctccttttc ttccgctctt acgtcccact aaaaggtgga tttggaaacc ctgctataga
1921 ttgtctggtg cctcaggagt gggtccaaca tttctatcag gaatctgccc cctctctggg
1981 ggatgtggcc ttagtcaggt acgtcaaccc agacaccggg cgcgtccttt ttgaggccaa
2041 actccacaaa ggtgggttcc tgactgtgtc aagtactagc acagggcctg ttgtggttcc
2101 agccaatggc tatttcggat ttgactcctg ggttaatcaa ttttactctc ttgcccccat
2161 gggaactggg aatgggcgca gaaggtttca gtaatggcag gagctttcat agcaggttta
2221 gcaggtgatg tgcttagtaa tggcctcggt tcgctaatta atgccggagc caatgctatc
2281 aatcaaagag cagagtttga ttttaatagg caattgcaac aaaattcttt caatcatgat
2341 aaggagatgt taagtgccca aattcaagca acaaaacagt tgcaggctga tatgatagca
2401 atcaaacagg gagtcctagc tgctgggggt ttctcaccaa ctgatgcagc cagaggagct
2461 gtcaatgcac ccatgaccca agcactagat tggagtggca ctaggtactg ggcccctggt
2521 tcaatgaaga ccaccagcta ttctggaaag tttgtatcca tgaatcctgt taggcaggtt
2581 gagttcccgc agcccaaaaa gagtgcggcc ataccatcaa gcgccagctc tgtgtcttct
2641 ggtaggacca atttgacaaa ttccacccaa tcaactgttg ttagcacttc ctcagcacca
2701 ccttctaggg gctcttccgc cccttctact ctgtcaaggg ccacaactag aacttccaat
2761 tgggttgagg aacaaaacag gaatttggaa ccctacatga ggggtgccct tcaaacaaca
2821 tttgtcaccc ccccttccag ccgggcgtct agcaatggaa cagtctcaac tgtaccaaaa
2881 ggtgttttgg actcctggac acctgcgttt aatacccgca ggcagccgct tttcgcttac
2941 cttcgtaaga agggggagtc acaagtttag tgaaaagata attaatgatt aataattgat
3001 cttgc
//