Typing tool
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Typing tool
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Complete norovirus genomes
| AF414421 | GII.1 | |
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| GII.P37 |
ORF1: 1..591
ORF2: 572..2179
ORF3: 2179..2961
LOCUS AF414421 3009 bp ss-RNA linear VRL 26-JUL-2016
DEFINITION Norwalk-like virus NLV/Port Canaveral/301/1994/US RNA polymerase
(orf1) gene, partial cds; and capsid protein (orf2) and minor
structural protein (orf3) genes, complete cds.
ACCESSION AF414421
VERSION AF414421.1
KEYWORDS .
SOURCE Norwalk-like virus NLV/Port Canaveral/301/1994/US
ORGANISM Norwalk-like virus NLV/Port Canaveral/301/1994/US
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3009)
AUTHORS Ando,T., Monroe,S.S., Noel,J.S. and Glass,R.I.
TITLE A one-tube method of reverse transcription-PCR to efficiently
amplify a 3-kilobase region from the RNA polymerase gene to the
poly(A) tail of small round-structured viruses (Norwalk-like
viruses)
JOURNAL J. Clin. Microbiol. 35 (3), 570-577 (1997)
PUBMED 9041391
REFERENCE 2 (bases 871 to 1147)
AUTHORS Noel,J.S., Ando,T., Leite,J.P., Green,K.Y., Dingle,K.E.,
Estes,M.K., Seto,Y., Monroe,S.S. and Glass,R.I.
TITLE Correlation of patient immune responses with genetically
characterized small round-structured viruses involved in outbreaks
of nonbacterial acute gastroenteritis in the United States, 1990 to
1995
JOURNAL J. Med. Virol. 53 (4), 372-383 (1997)
PUBMED 9407386
REFERENCE 3 (bases 1 to 3009)
AUTHORS Ando,T., Noel,J.S. and Fankhauser,R.L.
TITLE Genetic classification of 'Norwalk-like viruses.
JOURNAL J. Infect. Dis. 181 (Suppl 2), S336-S348 (2000)
PUBMED 10804147
REFERENCE 4 (bases 1 to 3009)
AUTHORS Ando,T., Seto,Y., Noel,J.S., Monroe,S.S., Glass,R.I. and
Fankhauser,R.L.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2001) Viral Gastroenteritis Section/Division of
Viral and Rickettsial Diseases/National Center for Infectious
Diseases, Centers for Disease Control and Prevention, 1600 Clifton
Road, Atlanta, GA 30333, USA
FEATURES Location/Qualifiers
source 1..3009
/organism="Norwalk-like virus NLV/Port
Canaveral/301/1994/US"
/mol_type="genomic RNA"
/strain="Hu/NLV/Port Canaveral/301/1994/US"
/db_xref="taxon:171853"
/clone="pYS20A"
/note="NLV/301; NLV/S20;
group: GII/1"
gene <1..591
/gene="orf1"
CDS <1..591
/gene="orf1"
/note="nonstructural protein"
/codon_start=1
/product="RNA polymerase"
/protein_id="AAL13015.1"
/translation="LLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPERL
TAKLKEYGLKPTRPDKTEGPLIISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMY
WTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFY
VPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 572..2179
/gene="orf2"
CDS 572..2179
/gene="orf2"
/note="major structural protein"
/codon_start=1
/product="capsid protein"
/protein_id="AAL13016.1"
/translation="MKMASNDAAPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQ
NNVIDPWIRMNFVQAPNGEFTVSPRNSPGEILLNLELGPELNPFLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKLVFAAIPPHFPIENLSPGQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQEPEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
TVESKTKPFTLPILTIGELSNSRFPAPIDELYTSPNEGLVVQPQNGRPTLDGELLGTT
QLVPSNICSLRGRINAHLSDNQHRWNMQVTNANGTPFDPTEDAPAPLGTPDFLANIYG
VTSQRNPDNTCRAHDGILATWSPKFTPKLGSVVLGTWEDRDFDINQPTRFTPVGLYDT
DHFNQWALPNYSGALTLNMNLAPSVAPLFPGEQLLFFRSHIPLKGGTSNGAIDCLLPQ
EWVQHFYQESAPSSTDVALIRYTNPDTGRVLFEAKLHRQGFITVANSGSRPIVVPPNG
YFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 2179..2961
/gene="orf3"
CDS 2179..2961
/gene="orf3"
/codon_start=1
/product="minor structural protein"
/protein_id="AAL13017.1"
/translation="MAGAFMAGLAGDLLTNSVSSLVNAGANAINQKVDFKNNKQLQQA
SFNHDKEMLLAQIQATKQLQADMIALRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG
TRYWAPGATKTTTFSGGFTGSSHARTVDLPKKTPATPASVPAPRSSSSSASTVSTRST
FVSGSSNPPSPTKSSISVSSQSTSPSSRTSEWVRNQNRALEPYMRGALKTAYVTPPSS
RASSNGTVSTVPKEVLDSWTSVFNTHRQPLFAHLRRRGESQV"
3'UTR 2962..3009
ORIGIN
1 ctcctcaccc tttgtgcact ctctgaagtc acgaacctgt cccctgacat catacaagct
61 aactctctat tttctttcta tggtgatgat gagattgtga gcacagacat aaaattggac
121 ccagaaaggt taacagcaaa actgaaagag tatgggctga aaccaacccg ccctgacaag
181 actgagggac ccctgatcat ttctgaggac ctggatggtt tgaccttcct gcggagaact
241 gtgacccgcg acccagctgg ctggtttgga aaattggaac aaagctcaat acttaggcag
301 atgtattgga ccagaggccc taatcatgaa gacccatctg aaacaatgat accacattcc
361 caaaggccca tacaactgat gtccctactg ggtgaagctg cactacatgg cccagcattc
421 tacagtaaaa ttagcaaatt agtcattgca gagttgaagg aaggtggcat ggatttttac
481 gtgcccaggc aagagccaat gttcagatgg atgagattct cagacctgag cacgtgggag
541 ggcgatcgca atctggctcc cagttttgtg aatgaagatg gcgtcgaatg acgccgctcc
601 atctaatgat ggtgcagccg gtctcgtacc agaggtcaac aacgagacga tggcactcga
661 accggtggct ggggcttcca tagccgcccc tctaaccggt caaaacaatg tgatagaccc
721 ctggattaga atgaactttg ttcaagcccc aaatggtgaa tttacagtgt ctccccgtaa
781 ctctcctggt gaaattctgt taaatttaga attaggtcct gaattaaatc cattcttagc
841 acacctttca aggatgtaca atggttatgc tggcggggtt gaagtgcagg tgctacttgc
901 tgggaacgcg ttcacagcgg gaaaactagt gtttgcagca atccccccac atttccctat
961 tgagaacctt agtcctggac aaattacaat gttcccccat gtgatcattg atgttaggac
1021 attagagcct gtacttttgc ccctcccaga tgttaggaat aatttcttcc attacaatca
1081 ggagcctgag ccccgtatga ggcttgtggc tatgctgtat acccccctta ggtctaatgg
1141 ttctggtgat gatgtgttta cagtttcttg tagggttctt actcgccctt ccccagattt
1201 tgatttcaat tatttggttc ccccaactgt tgagtctaaa accaaaccat tcaccctacc
1261 aattctgacc attggagaat tgtcaaattc taggttccca gctccaattg acgaactgta
1321 taccagtccc aatgagggct tggttgttca accccaaaac ggcagaccaa cactcgacgg
1381 tgaattgttg ggcaccactc aactcgtgcc ctcaaatatt tgctcactgc gaggacgcat
1441 caacgcccac ttgtcagata accagcaccg ttggaacatg caggtcacaa atgcaaatgg
1501 aactcccttc gaccccaccg aagatgcccc tgcaccactg ggcacaccag acttcctagc
1561 gaacatctat ggagtcacca gccagaggaa ccccgacaac acttgtcgcg cccatgatgg
1621 aattttggcg acttggagcc ccaaatttac acccaaacta gggtctgtgg tcctgggcac
1681 ttgggaagac agagactttg atataaacca acccacgaga tttacacctg ttggtttgta
1741 tgatactgat cactttaatc aatgggcttt accaaattat tctggagcgc tgactctaaa
1801 catgaacttg gcaccctctg tcgctcctct ctttccaggt gagcagctac ttttcttcag
1861 gtcccacata ccactcaaag gaggtacctc taatggtgct attgattgtc tactccccca
1921 ggaatgggtt cagcactttt accaggagtc agctccatcc tctactgacg tggctctaat
1981 caggtatacc aaccctgaca cagggcgcgt tttgtttgag gctaaattgc acaggcaggg
2041 atttatcaca gtggcaaact ctggctctag acctattgtt gtccccccaa atggctactt
2101 tagatttgac tcttgggtca atcagtttta ttctcttgcc cccatgggaa ctgggaatgg
2161 gcgcagaaga gtacagtaat ggctggagct ttcatggcag ggcttgctgg tgacttgctc
2221 accaatagtg ttagttcact tgtgaatgct ggagctaatg caataaatca aaaagtggac
2281 tttaaaaaca acaaacaact acaacaggct tcttttaacc atgataaaga gatgcttcta
2341 gctcaaatcc aggccactaa acagctacag gctgacatga ttgcactcag acaaggggtg
2401 ttgaccgcgg gcggcttctc ccctactgat gcagcaagag gggcagttaa cgcgcctatg
2461 acgcaggtct tggactggaa tggaactagg tactgggccc ccggagctac aaaaacaacc
2521 actttctccg gagggttcac tggctcttcc cacgccagga ctgttgatct gcccaagaaa
2581 acaccagcta ctccagcctc agtgcctgca cctagatcca gttcttcttc tgcttctaca
2641 gtctccactc gctcaacatt tgttagtggg tcttctaatc ctccttctcc aaccaagagt
2701 tctattagtg tttcttccca atctacttcc ccgtcctccc ggactagtga atgggtgcgc
2761 aaccaaaata gggcactgga gccttacatg aggggggcac taaaaacagc ttacgtgaca
2821 cctccttcta gtagggcttc tagtaatggc acagtctcaa ccgtgccaaa ggaagttttg
2881 gactcctgga catctgtgtt taacacccac agacagccgc tcttcgctca tctccgtcgg
2941 aggggggagt cacaagttta gtgaaaagat gacttttcct ttcttctttc tttgaaaatt
3001 ttgtcttat
//