![]() |
![]() |
![]() |
![]() |
|
Typing tool
|
Complete norovirus genomes
AF414420 | GII.12 | ![]() |
|
---|---|---|---|
GII.P12 |
ORF1: 1..591 ORF2: 572..2179 ORF3: 2179..2958LOCUS AF414420 3004 bp ss-RNA linear VRL 26-JUL-2016 DEFINITION Norwalk-like virus NLV/Honolulu/314/1994/US RNA polymerase (orf1) gene, partial cds; and capsid protein (orf2) and minor structural protein (orf3) genes, complete cds. ACCESSION AF414420 VERSION AF414420.1 KEYWORDS . SOURCE Norwalk-like virus NLV/Honolulu/314/1994/US ORGANISM Norwalk-like virus NLV/Honolulu/314/1994/US Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3004) AUTHORS Ando,T., Monroe,S.S., Noel,J.S. and Glass,R.I. TITLE A one-tube method of reverse transcription-PCR to efficiently amplify a 3-kilobase region from the RNA polymerase gene to the poly(A) tail of small round-structured viruses (Norwalk-like viruses) JOURNAL J. Clin. Microbiol. 35 (3), 570-577 (1997) PUBMED 9041391 REFERENCE 2 (bases 871 to 1147) AUTHORS Noel,J.S., Ando,T., Leite,J.P., Green,K.Y., Dingle,K.E., Estes,M.K., Seto,Y., Monroe,S.S. and Glass,R.I. TITLE Correlation of patient immune responses with genetically characterized small round-structured viruses involved in outbreaks of nonbacterial acute gastroenteritis in the United States, 1990 to 1995 JOURNAL J. Med. Virol. 53 (4), 372-383 (1997) PUBMED 9407386 REFERENCE 3 (bases 1 to 3004) AUTHORS Ando,T., Noel,J.S. and Fankhauser,R.L. TITLE Genetic classification of 'Norwalk-like viruses. JOURNAL J. Infect. Dis. 181 (Suppl 2), S336-S348 (2000) PUBMED 10804147 REFERENCE 4 (bases 1 to 3004) AUTHORS Ando,T., Seto,Y., Noel,J.S., Monroe,S.S., Glass,R.I. and Fankhauser,R.L. TITLE Direct Submission JOURNAL Submitted (27-AUG-2001) Viral Gastroenteritis Section/Division of Viral and Rickettsial Diseases/National Center for Infectious Diseases, Centers for Disease Control and Prevention, 1600 Clifton Road, Atlanta, GA 30333, USA FEATURES Location/Qualifiers source 1..3004 /organism="Norwalk-like virus NLV/Honolulu/314/1994/US" /mol_type="genomic RNA" /strain="Hu/NLV/Honolulu/314/1994/US" /db_xref="taxon:171852" /clone="pYS19A" /note="final grouping into the genetic cluster is pending; NLV/314; NLV/S19; group: GII" gene <1..591 /gene="orf1" CDS <1..591 /gene="orf1" /note="nonstructural protein" /codon_start=1 /product="RNA polymerase" /protein_id="AAL13012.1" /translation="LLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKL TAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMY WTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFY VPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" gene 572..2179 /gene="orf2" CDS 572..2179 /gene="orf2" /note="major structural protein" /codon_start=1 /product="capsid protein" /protein_id="AAL13013.1" /translation="MKMASSDAAPSNDGAAGLVPEANNETMALEPVAGASIAAPLTGQ NNIIDPWIRLNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKLVFAAVPPHFPLENISPGQIAMFPHVIIDVRTLEPVLLPLPD VRNNFFHYNQQNEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP TVESKTKPFTLPILTIGELTNSRFPVPIDELYTSPNESLVVQPQNGRCVLDGELQGTT QLLPTAICSFRGRINQKVSGENHVWNMQVTNINGTPFDPTEDVPAPLGTPDFSGKLFG VLSQRDHDNACRSHDAVIATNSAKFTPKLGAIQIGTWEEDDVHINQPTKFTPVGLFEN EGFNQWTLPNYSGALTLNMGLAPPVAPTFPGEQILFFRSHIPLKGGVADPVIDCLLPQ EWIQHLYQESAPSQSDVALIRFTNPDTGRVLFEAKLHRSGYITVANTGSRPIVVPANG YFRFDSWVNQFYSLAPMGTGNGRRRVQ" gene 2179..2958 /gene="orf3" CDS 2179..2958 /gene="orf3" /codon_start=1 /product="minor structural protein" /protein_id="AAL13014.1" /translation="MAGAFIAGLAGDIVTNGIGSLVNAGANAINQKVDFENNKQLQQA SFNHDKEMLQAQVRATKQLRADMIAIRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG TRHWAPGATKTTAFSGGFTNVSHARTVDLTKKTSATPAPTSVSRPSSIVSTVSTRSTL VSGSSNPSSSARSSSSVSSQPTSSSSRTSEWVRSQNRALEPYMRGALHTAYVTPPSSR ASSNGTVSTVPKEVLDSWTSAFNTRRQPLFAHLRRRGESQV" 3'UTR 2959..3004 ORIGIN 1 ctcctcaccc tctgtgcact ttctgaggtt acaaacctgt cccccgacat tatccaggct 61 aactccctct tttccttcta cggtgatgat gaaattgtga gcacagacat aaaattggac 121 ccagagaagt tgacagcaaa acttaaggaa tacgggttga aaccgacccg ccctgacaag 181 actgagggac cccttgttat ctctgaggac ctggatggcc taaccttcct gcggaggact 241 gtgacccgcg acccagctgg ctggtttgga aagttggaac agagttcaat acttaggcaa 301 atgtattgga ctaggggccc taaccatgaa gacccatctg aaacaatgat accacactcc 361 caaagaccca tacaattgat gtctttgctg ggcgaggctg cactccacgg cccagcattc 421 tacagcaaaa tcagcaagct ggtcattgca gaactgaagg aaggtggcat ggatttttac 481 gtgcccagac aagagccaat gttcagatgg atgaggttct cagatctgag cacgtgggag 541 ggcgatcgca atctggctcc cagttttgtg aatgaagatg gcgtcgagtg acgccgctcc 601 atctaatgat ggtgcagccg gtcttgtacc agaggctaac aatgagacca tggcacttga 661 accggtggct ggggcttcaa tagccgcccc actcaccggc caaaacaata ttatagaccc 721 ctggattaga ttaaattttg tgcaggctcc caatggagag ttcacggttt caccccgcaa 781 ctcgcccggg gaagtcctat taaatttgga attaggcccc gaactaaatc catacctagc 841 acacctttct agaatgtata atggttatgc aggtggggtt gaggtgcaag tactactggc 901 tgggaatgcg ttcacagctg gaaaattggt gtttgccgca gttccccctc attttccatt 961 agaaaacata agccctggtc agatagctat gttccctcat gtaattattg atgttaggac 1021 tttagaacca gttttgttgc cccttcctga tgttaggaat aatttctttc attataatca 1081 gcagaatgaa ccgaggatga gactcgtagc aatgctttac actcctctca gatctaatgg 1141 ttctggtgat gatgtattta ctgtctcctg cagggtgctt acccgacctt cccctgattt 1201 tgattttaat tacttggtcc cccctaccgt tgaatctaaa actaaaccct tcacactccc 1261 tatcttgact ataggggagt taaccaactc caggttccct gtgcccatag atgagctcta 1321 caccagtccc aatgagagtc tggtggtgca accccagaac gggagatgcg tgctagatgg 1381 ggagctgcag ggcacgactc agctcctccc cacggcgatt tgctcattca ggggccggat 1441 caatcagaag gtgagtggag aaaaccatgt ttggaatatg caggtcacca acatcaacgg 1501 gacccctttt gatccaacgg aggatgtccc ggctcctcta ggcaccccag atttctctgg 1561 caagctcttt ggtgtactaa gccagagaga ccatgataat gcctgtagga gtcatgatgc 1621 agtaatcgca accaactctg ccaaattcac tccaaaattg ggcgctatac aaattggcac 1681 atgggaagaa gacgatgtgc acatcaacca acctactaag tttactccag ttggcttgtt 1741 tgaaaatgaa ggtttcaacc agtggacact ccccaattac tctggagcct taacacttaa 1801 tatggggttg gcccctcctg tggcccccac cttccctggt gaacaaattc ttttctttag 1861 atcccacatt cctcttaaag gaggtgtggc ggacccagtt attgattgcc tcttgcctca 1921 agagtggatc caacatcttt accaagagtc ggccccttca caatcagatg tagcattgat 1981 taggtttaca aatccagaca caggacgtgt tctatttgaa gcaaaattac acaggagtgg 2041 ttacattaca gtggccaata ctggtagcag accgattgtg gtaccagcta atggttactt 2101 caggtttgac tcttgggtta atcaattcta ttctctcgcc cccatgggaa ctggaaatgg 2161 gcgcagaagg gtgcagtaat ggctggagct tttatagcag ggcttgctgg tgacatagtc 2221 accaatggca ttggctcact tgtgaacgct ggggccaatg caataaatca aaaagtagac 2281 tttgaaaaca acaagcaact acagcaggct tctttcaatc atgataaaga gatgctgcaa 2341 gctcaagtcc gggccaccaa acagctgcgg gctgatatga ttgcaatcag acaaggggtg 2401 ttgaccgcgg gcggcttctc ccccactgat gcagcaagag gggcagttaa tgcacctatg 2461 actcaggtct tagactggaa cgggaccagg cattgggccc ccggagccac gaaaaccact 2521 gctttctccg gtggattcac caatgtttct catgccagaa ctgtcgacct gaccaagaag 2581 acatcagcca caccagcccc tacgtctgtt tccagaccta gctctattgt ctctacagtc 2641 tccacccgct caaccttggt tagcgggtct tccaatcctt cttcttcagc taggagttct 2701 tctagtgttt cttctcaacc cacctcctcc tcttctcgga ccagtgagtg ggtgcgcagc 2761 caaaacaggg cactggagcc ttacatgagg ggagcgctac acacagccta tgtgacgcct 2821 ccctctagta gagcttctag taatggcaca gtctcaaccg tgccaaaaga ggttttggac 2881 tcctggacat ctgcatttaa cacccgcaga caaccgctat tcgctcatct ccgtcggaga 2941 ggggagtcac aagtttagtg aaaagatgat ctttattttc tttcctttga agattttgtc 3001 ttgc //