Typing tool
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Typing tool
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Complete norovirus genomes
| AF414420 | GII.12 | |
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| GII.P12 |
ORF1: 1..591
ORF2: 572..2179
ORF3: 2179..2958
LOCUS AF414420 3004 bp ss-RNA linear VRL 26-JUL-2016
DEFINITION Norwalk-like virus NLV/Honolulu/314/1994/US RNA polymerase (orf1)
gene, partial cds; and capsid protein (orf2) and minor structural
protein (orf3) genes, complete cds.
ACCESSION AF414420
VERSION AF414420.1
KEYWORDS .
SOURCE Norwalk-like virus NLV/Honolulu/314/1994/US
ORGANISM Norwalk-like virus NLV/Honolulu/314/1994/US
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3004)
AUTHORS Ando,T., Monroe,S.S., Noel,J.S. and Glass,R.I.
TITLE A one-tube method of reverse transcription-PCR to efficiently
amplify a 3-kilobase region from the RNA polymerase gene to the
poly(A) tail of small round-structured viruses (Norwalk-like
viruses)
JOURNAL J. Clin. Microbiol. 35 (3), 570-577 (1997)
PUBMED 9041391
REFERENCE 2 (bases 871 to 1147)
AUTHORS Noel,J.S., Ando,T., Leite,J.P., Green,K.Y., Dingle,K.E.,
Estes,M.K., Seto,Y., Monroe,S.S. and Glass,R.I.
TITLE Correlation of patient immune responses with genetically
characterized small round-structured viruses involved in outbreaks
of nonbacterial acute gastroenteritis in the United States, 1990 to
1995
JOURNAL J. Med. Virol. 53 (4), 372-383 (1997)
PUBMED 9407386
REFERENCE 3 (bases 1 to 3004)
AUTHORS Ando,T., Noel,J.S. and Fankhauser,R.L.
TITLE Genetic classification of 'Norwalk-like viruses.
JOURNAL J. Infect. Dis. 181 (Suppl 2), S336-S348 (2000)
PUBMED 10804147
REFERENCE 4 (bases 1 to 3004)
AUTHORS Ando,T., Seto,Y., Noel,J.S., Monroe,S.S., Glass,R.I. and
Fankhauser,R.L.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2001) Viral Gastroenteritis Section/Division of
Viral and Rickettsial Diseases/National Center for Infectious
Diseases, Centers for Disease Control and Prevention, 1600 Clifton
Road, Atlanta, GA 30333, USA
FEATURES Location/Qualifiers
source 1..3004
/organism="Norwalk-like virus NLV/Honolulu/314/1994/US"
/mol_type="genomic RNA"
/strain="Hu/NLV/Honolulu/314/1994/US"
/db_xref="taxon:171852"
/clone="pYS19A"
/note="final grouping into the genetic cluster is pending;
NLV/314; NLV/S19;
group: GII"
gene <1..591
/gene="orf1"
CDS <1..591
/gene="orf1"
/note="nonstructural protein"
/codon_start=1
/product="RNA polymerase"
/protein_id="AAL13012.1"
/translation="LLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKL
TAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMY
WTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFY
VPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 572..2179
/gene="orf2"
CDS 572..2179
/gene="orf2"
/note="major structural protein"
/codon_start=1
/product="capsid protein"
/protein_id="AAL13013.1"
/translation="MKMASSDAAPSNDGAAGLVPEANNETMALEPVAGASIAAPLTGQ
NNIIDPWIRLNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKLVFAAVPPHFPLENISPGQIAMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQQNEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
TVESKTKPFTLPILTIGELTNSRFPVPIDELYTSPNESLVVQPQNGRCVLDGELQGTT
QLLPTAICSFRGRINQKVSGENHVWNMQVTNINGTPFDPTEDVPAPLGTPDFSGKLFG
VLSQRDHDNACRSHDAVIATNSAKFTPKLGAIQIGTWEEDDVHINQPTKFTPVGLFEN
EGFNQWTLPNYSGALTLNMGLAPPVAPTFPGEQILFFRSHIPLKGGVADPVIDCLLPQ
EWIQHLYQESAPSQSDVALIRFTNPDTGRVLFEAKLHRSGYITVANTGSRPIVVPANG
YFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 2179..2958
/gene="orf3"
CDS 2179..2958
/gene="orf3"
/codon_start=1
/product="minor structural protein"
/protein_id="AAL13014.1"
/translation="MAGAFIAGLAGDIVTNGIGSLVNAGANAINQKVDFENNKQLQQA
SFNHDKEMLQAQVRATKQLRADMIAIRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG
TRHWAPGATKTTAFSGGFTNVSHARTVDLTKKTSATPAPTSVSRPSSIVSTVSTRSTL
VSGSSNPSSSARSSSSVSSQPTSSSSRTSEWVRSQNRALEPYMRGALHTAYVTPPSSR
ASSNGTVSTVPKEVLDSWTSAFNTRRQPLFAHLRRRGESQV"
3'UTR 2959..3004
ORIGIN
1 ctcctcaccc tctgtgcact ttctgaggtt acaaacctgt cccccgacat tatccaggct
61 aactccctct tttccttcta cggtgatgat gaaattgtga gcacagacat aaaattggac
121 ccagagaagt tgacagcaaa acttaaggaa tacgggttga aaccgacccg ccctgacaag
181 actgagggac cccttgttat ctctgaggac ctggatggcc taaccttcct gcggaggact
241 gtgacccgcg acccagctgg ctggtttgga aagttggaac agagttcaat acttaggcaa
301 atgtattgga ctaggggccc taaccatgaa gacccatctg aaacaatgat accacactcc
361 caaagaccca tacaattgat gtctttgctg ggcgaggctg cactccacgg cccagcattc
421 tacagcaaaa tcagcaagct ggtcattgca gaactgaagg aaggtggcat ggatttttac
481 gtgcccagac aagagccaat gttcagatgg atgaggttct cagatctgag cacgtgggag
541 ggcgatcgca atctggctcc cagttttgtg aatgaagatg gcgtcgagtg acgccgctcc
601 atctaatgat ggtgcagccg gtcttgtacc agaggctaac aatgagacca tggcacttga
661 accggtggct ggggcttcaa tagccgcccc actcaccggc caaaacaata ttatagaccc
721 ctggattaga ttaaattttg tgcaggctcc caatggagag ttcacggttt caccccgcaa
781 ctcgcccggg gaagtcctat taaatttgga attaggcccc gaactaaatc catacctagc
841 acacctttct agaatgtata atggttatgc aggtggggtt gaggtgcaag tactactggc
901 tgggaatgcg ttcacagctg gaaaattggt gtttgccgca gttccccctc attttccatt
961 agaaaacata agccctggtc agatagctat gttccctcat gtaattattg atgttaggac
1021 tttagaacca gttttgttgc cccttcctga tgttaggaat aatttctttc attataatca
1081 gcagaatgaa ccgaggatga gactcgtagc aatgctttac actcctctca gatctaatgg
1141 ttctggtgat gatgtattta ctgtctcctg cagggtgctt acccgacctt cccctgattt
1201 tgattttaat tacttggtcc cccctaccgt tgaatctaaa actaaaccct tcacactccc
1261 tatcttgact ataggggagt taaccaactc caggttccct gtgcccatag atgagctcta
1321 caccagtccc aatgagagtc tggtggtgca accccagaac gggagatgcg tgctagatgg
1381 ggagctgcag ggcacgactc agctcctccc cacggcgatt tgctcattca ggggccggat
1441 caatcagaag gtgagtggag aaaaccatgt ttggaatatg caggtcacca acatcaacgg
1501 gacccctttt gatccaacgg aggatgtccc ggctcctcta ggcaccccag atttctctgg
1561 caagctcttt ggtgtactaa gccagagaga ccatgataat gcctgtagga gtcatgatgc
1621 agtaatcgca accaactctg ccaaattcac tccaaaattg ggcgctatac aaattggcac
1681 atgggaagaa gacgatgtgc acatcaacca acctactaag tttactccag ttggcttgtt
1741 tgaaaatgaa ggtttcaacc agtggacact ccccaattac tctggagcct taacacttaa
1801 tatggggttg gcccctcctg tggcccccac cttccctggt gaacaaattc ttttctttag
1861 atcccacatt cctcttaaag gaggtgtggc ggacccagtt attgattgcc tcttgcctca
1921 agagtggatc caacatcttt accaagagtc ggccccttca caatcagatg tagcattgat
1981 taggtttaca aatccagaca caggacgtgt tctatttgaa gcaaaattac acaggagtgg
2041 ttacattaca gtggccaata ctggtagcag accgattgtg gtaccagcta atggttactt
2101 caggtttgac tcttgggtta atcaattcta ttctctcgcc cccatgggaa ctggaaatgg
2161 gcgcagaagg gtgcagtaat ggctggagct tttatagcag ggcttgctgg tgacatagtc
2221 accaatggca ttggctcact tgtgaacgct ggggccaatg caataaatca aaaagtagac
2281 tttgaaaaca acaagcaact acagcaggct tctttcaatc atgataaaga gatgctgcaa
2341 gctcaagtcc gggccaccaa acagctgcgg gctgatatga ttgcaatcag acaaggggtg
2401 ttgaccgcgg gcggcttctc ccccactgat gcagcaagag gggcagttaa tgcacctatg
2461 actcaggtct tagactggaa cgggaccagg cattgggccc ccggagccac gaaaaccact
2521 gctttctccg gtggattcac caatgtttct catgccagaa ctgtcgacct gaccaagaag
2581 acatcagcca caccagcccc tacgtctgtt tccagaccta gctctattgt ctctacagtc
2641 tccacccgct caaccttggt tagcgggtct tccaatcctt cttcttcagc taggagttct
2701 tctagtgttt cttctcaacc cacctcctcc tcttctcgga ccagtgagtg ggtgcgcagc
2761 caaaacaggg cactggagcc ttacatgagg ggagcgctac acacagccta tgtgacgcct
2821 ccctctagta gagcttctag taatggcaca gtctcaaccg tgccaaaaga ggttttggac
2881 tcctggacat ctgcatttaa cacccgcaga caaccgctat tcgctcatct ccgtcggaga
2941 ggggagtcac aagtttagtg aaaagatgat ctttattttc tttcctttga agattttgtc
3001 ttgc
//