Human calicivirus
Typing tool

Complete norovirus genomes

AF414419  GII.1
 GII.P37

Length: 3,2 | 3 CDS 

ORF1: 1..591
ORF2: 572..2179
ORF3: 2179..2952

LOCUS       AF414419                3002 bp ss-RNA     linear   VRL 26-JUL-2016
DEFINITION  Norwalk-like virus NLV/Richmond/283/1994/US RNA polymerase (orf1)
            gene, partial cds; and capsid protein (orf2) and minor structural
            protein (orf3) genes, complete cds.
ACCESSION   AF414419
VERSION     AF414419.1
KEYWORDS    .
SOURCE      Norwalk-like virus NLV/Richmond/283/1994/US
  ORGANISM  Norwalk-like virus NLV/Richmond/283/1994/US
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE   1  (bases 1 to 3002)
  AUTHORS   Ando,T., Monroe,S.S., Noel,J.S. and Glass,R.I.
  TITLE     A one-tube method of reverse transcription-PCR to efficiently
            amplify a 3-kilobase region from the RNA polymerase gene to the
            poly(A) tail of small round-structured viruses (Norwalk-like
            viruses)
  JOURNAL   J. Clin. Microbiol. 35 (3), 570-577 (1997)
   PUBMED   9041391
REFERENCE   2  (bases 871 to 1147)
  AUTHORS   Noel,J.S., Ando,T., Leite,J.P., Green,K.Y., Dingle,K.E.,
            Estes,M.K., Seto,Y., Monroe,S.S. and Glass,R.I.
  TITLE     Correlation of patient immune responses with genetically
            characterized small round-structured viruses involved in outbreaks
            of nonbacterial acute gastroenteritis in the United States, 1990 to
            1995
  JOURNAL   J. Med. Virol. 53 (4), 372-383 (1997)
   PUBMED   9407386
REFERENCE   3  (bases 1 to 3002)
  AUTHORS   Ando,T., Noel,J.S. and Fankhauser,R.L.
  TITLE     Genetic classification of 'Norwalk-like viruses.
  JOURNAL   J. Infect. Dis. 181 (Suppl 2), S336-S348 (2000)
   PUBMED   10804147
REFERENCE   4  (bases 1 to 3002)
  AUTHORS   Ando,T., Seto,Y., Noel,J.S., Glass,R.I. and Fankhauser,R.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-AUG-2001) Viral Gastroenteritis Section/Division of
            Viral and Rickettsial Diseases/National Center for Infectious
            Diseases, Centers for Disease Control and Prevention, 1600 Clifton
            Road, Atlanta, GA 30333, USA
FEATURES             Location/Qualifiers
     source          1..3002
                     /organism="Norwalk-like virus NLV/Richmond/283/1994/US"
                     /mol_type="genomic RNA"
                     /strain="Hu/NLV/Richmond/283/1994/US"
                     /db_xref="taxon:171851"
                     /clone="pYS18B"
                     /note="NLV/283; NLV/S18;
                     group: GII/1"
     gene            <1..591
                     /gene="orf1"
     CDS             <1..591
                     /gene="orf1"
                     /note="nonstructural protein"
                     /codon_start=1
                     /product="RNA polymerase"
                     /protein_id="AAL13009.1"
                     /translation="LLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPERL
                     TAKLKEYGLKPTRPDKTEGPLSISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMY
                     WTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFY
                     VPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
     gene            572..2179
                     /gene="orf2"
     CDS             572..2179
                     /gene="orf2"
                     /note="major structural protein"
                     /codon_start=1
                     /product="capsid protein"
                     /protein_id="AAL13010.1"
                     /translation="MKMASNDAAPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQ
                     NNVIDPWIRMNFVQAPNGEFTVSPRNSPGEILLNLELGPELNPFLAHLSRMYNGYAGG
                     VEVQVLLAGNAFTAGKLVFAAIPPHFPIENLSPGQITMFPHVIIDVRTLEPVLLPLPD
                     VRNNFFHYNQEPEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
                     TVESKTKPFTLLILTIGELSNSRFPAPIDELYTSPNEGLVVQPQNGRSTLDGELLGTT
                     QLVPSNICSLRGRINAHLSDNQHRWNMQVTNANGTPFDPTEDVPAPLGTPDFLANIYG
                     VTSQRNPDNTCRAHDGILATWSPKFTPKLGSVVLGTWEDRDFDINQPARFTPVGLYDT
                     DHFNQWALPNYSGALTLNMNLAPSVAPLFPGEQLLFFRSHIPLKGGTSNGAIDCLLPQ
                     EWVQHFYQESAPSSTDVALIRYTNPDTGRVLFEAKLHRQGFITVANSGSRPIVVPPNG
                     YFRFDSWVNQFYSLAPMGTGNGRRRVQ"
     gene            2179..2952
                     /gene="orf3"
     CDS             2179..2952
                     /gene="orf3"
                     /codon_start=1
                     /product="minor structural protein"
                     /protein_id="AAL13011.1"
                     /translation="MAGAFIAGLAGDLLTNGVGSLVNAGANAINQKVDFENNKQLQQA
                     SFNHDKEMLQAQIQATKQLQADMIALRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG
                     TRYWAPGAPKTTTFSGGFTSSSHARTVDLPKKAPVTPASVSVPRSSSSSASTVSTRST
                     LVSGSSNFPSSTISVSSQSTSPSSRTSEWVRNQNRALEPYMRGALKTAYVTPPSSRAS
                     SNGTVSTVPKEVLDSWTSVFNTHRQPLFAHLRRRGESQV"
     3'UTR           2953..3002
ORIGIN      
        1 ctcctcaccc tttgtgcact ctctgaagtc acgaacctgt cccctgacat catacaagct
       61 aattctctat tttctttcta tggtgatgat gagattgtga gcacagacat aaaattggac
      121 ccagaaagat taacagcaaa actgaaagag tatgggctga agccaacccg ccctgacaag
      181 actgagggac ccctgtccat ttctgaggac ctggatggtt tgaccttcct gcggagaact
      241 gtgacccgcg acccagctgg ctggtttgga aaattggaac aaagctcaat actcaggcag
      301 atgtactgga ccagaggccc taatcatgaa gacccatctg aaacaatgat accacattcc
      361 caaaggccca tacaactgat gtccctgctg ggcgaagctg cactacatgg tccagcattc
      421 tacagtaaaa ttagcaaatt agtcattgca gagttgaagg aaggtggcat ggatttttac
      481 gtgcccaggc aagagccaat gttcagatgg atgagattct cagacctgag cacgtgggag
      541 ggcgatcgca atctggctcc cagttttgtg aatgaagatg gcgtcgaatg acgccgctcc
      601 atctaatgat ggtgcagccg gtctcgtacc agaggtcaac aacgagacga tggcactcga
      661 accggtggct ggggcttcca tagccgcccc tctaaccggt caaaacaatg tgatagaccc
      721 ctggattaga atgaattttg ttcaagcccc aaatggtgaa tttacagtgt ctccccgtaa
      781 ctctcctggt gaaattctgt taaatttaga attaggtcct gaattaaatc cattcttagc
      841 acacctttca aggatgtaca atggttatgc tggcggggtt gaagtgcagg tgctacttgc
      901 tgggaacgcg ttcacagcag gaaagctagt gtttgcagca atccccccac atttccctat
      961 tgagaacctt agtcctggac aaattacaat gttcccccat gtgatcattg atgttaggac
     1021 attagaacct gtgcttttgc ccctcccaga tgttaggaat aatttctttc attataatca
     1081 ggagcctgag ccccgtatga gacttgtggc tatgctgtat accccactta ggtctaatgg
     1141 ttctggtgat gatgtgttta cagtttcttg tagggttctt actcgccctt ccccagattt
     1201 tgatttcaat tatttggttc ccccaactgt tgagtctaaa accaaaccat tcaccctact
     1261 aattctgacc attggagaat tgtcaaattc tagattccca gctccaattg acgaactgta
     1321 taccagtccc aatgagggtt tggttgttca accccaaaac ggcagatcaa cactcgatgg
     1381 tgaattgttg ggcaccactc aactcgtgcc ctcaaacatc tgctcactac gaggacgcat
     1441 caatgcccac ttgtcagata accagcaccg ttggaacatg caggtcacaa atgcaaatgg
     1501 aactcccttc gaccccactg aagatgtccc tgcaccactg ggcacaccag acttcctagc
     1561 gaacatctat ggagtcacca gccagaggaa ccccgacaac acttgtcgcg cccatgatgg
     1621 aattttggcg acttggagcc ccaaatttac acccaagcta gggtctgtgg tcctgggcac
     1681 ttgggaagac agagattttg acataaacca acccgcgagg tttacacctg ttggtttgta
     1741 tgatactgat cactttaatc aatgggcttt accaaattat tctggagcgc tgactctaaa
     1801 catgaatttg gcaccctctg tcgcccctct ctttccaggt gagcagctac ttttcttcag
     1861 gtcccatata ccactcaaag gaggtacctc taatggtgct attgattgtc tactccccca
     1921 ggaatgggtt caacactttt accaggagtc agctccatcc tctactgacg tggctctaat
     1981 caggtacacc aaccctgaca caggacgcgt tttgtttgag gccaaattgc acaggcaggg
     2041 atttatcaca gtggcaaact ctggctctag acccattgtt gtccctccaa atggctattt
     2101 tagatttgat tcttgggtta atcagtttta ctctcttgcc cccatgggaa ctgggaatgg
     2161 gcgcagaaga gtgcagtaat ggctggagct ttcatagcag ggctagctgg tgacttgctc
     2221 accaatggtg ttggttcact tgtgaatgct ggagccaacg caataaatca aaaagtggac
     2281 tttgaaaata acaaacaact acaacaggct tcttttaatc atgataaaga gatgcttcaa
     2341 gctcaaatcc aggccactaa acagctacag gctgacatga ttgcactcag acaaggggtg
     2401 ttgaccgcgg gcggcttctc ccctactgat gcagcaagag gggcagttaa cgcacctatg
     2461 acgcaggtct tggactggaa tggaactagg tactgggccc ccggagcacc aaaaacaacc
     2521 accttctccg gagggttcac tagctcttcc cacgccagga ctgttgatct gcccaagaaa
     2581 gcaccagtca ctccagcctc agtgtctgta cctcgatcca gttcttcttc tgcttctaca
     2641 gtctccactc gctcaacact tgttagtggg tcttctaatt ttccttcttc aactattagt
     2701 gtttcttccc aatctacttc cccgtcctcc cggactagtg aatgggtgcg caaccaaaat
     2761 agggcactgg agccttacat gaggggggca cttaaaacag cttatgtgac acctccttct
     2821 agtagggctt ctagtaatgg cacagtctca accgtgccaa aggaagtttt ggactcctgg
     2881 acatctgtgt tcaacaccca cagacagccg ctcttcgctc atctccgtcg gagaggggag
     2941 tcacaagttt agtgaaaaga tgattttcct ttcttctttc tttgaaaatt ttgtctttta
     3001 gc
//