Typing tool
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Typing tool
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Complete norovirus genomes
| AF414418 | GII.1 | |
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| GII.P37 |
ORF1: 1..591
ORF2: 572..2179
ORF3: 2179..2961
LOCUS AF414418 3006 bp ss-RNA linear VRL 26-JUL-2016
DEFINITION Norwalk-like virus NLV/Westover/302/1994/US RNA polymerase (orf1)
gene, partial cds; and capsid protein (orf2) and minor structural
protein (orf3) genes, complete cds.
ACCESSION AF414418
VERSION AF414418.1
KEYWORDS .
SOURCE Norwalk-like virus NLV/Westover/302/1994/US
ORGANISM Norwalk-like virus NLV/Westover/302/1994/US
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3006)
AUTHORS Ando,T., Monroe,S.S., Noel,J.S. and Glass,R.I.
TITLE A one-tube method of reverse transcription-PCR to efficiently
amplify a 3-kilobase region from the RNA polymerase gene to the
poly(A) tail of small round-structured viruses (Norwalk-like
viruses)
JOURNAL J. Clin. Microbiol. 35 (3), 570-577 (1997)
PUBMED 9041391
REFERENCE 2 (bases 871 to 1147)
AUTHORS Noel,J.S., Ando,T., Leite,J.P., Green,K.Y., Dingle,K.E.,
Estes,M.K., Seto,Y., Monroe,S.S. and Glass,R.I.
TITLE Correlation of patient immune responses with genetically
characterized small round-structured viruses involved in outbreaks
of nonbacterial acute gastroenteritis in the United States, 1990 to
1995
JOURNAL J. Med. Virol. 53 (4), 372-383 (1997)
PUBMED 9407386
REFERENCE 3 (bases 1 to 3006)
AUTHORS Ando,T., Noel,J.S. and Fankhauser,R.L.
TITLE Genetic classification of 'Norwalk-like viruses.
JOURNAL J. Infect. Dis. 181 (Suppl 2), S336-S348 (2000)
PUBMED 10804147
REFERENCE 4 (bases 1 to 3006)
AUTHORS Ando,T., Seto,Y., Noel,J.S., Monroe,S.S., Glass,R.I. and
Fankhauser,R.L.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2001) Viral Gastroenteritis Section/Division of
Viral and Rickettsial Diseases/National Center for Infectious
Diseases, Centers for Disease Control and Prevention, 1600 Clifton
Road, Atlanta, GA 30333, USA
FEATURES Location/Qualifiers
source 1..3006
/organism="Norwalk-like virus NLV/Westover/302/1994/US"
/mol_type="genomic RNA"
/strain="Hu/NLV/Westover/302/1994/US"
/db_xref="taxon:171850"
/clone="pYS17A"
/note="NLV/302; NLV/S17;
group: GII/1"
gene <1..591
/gene="orf1"
CDS <1..591
/gene="orf1"
/note="nonstructural protein"
/codon_start=1
/product="RNA polymerase"
/protein_id="AAL13006.1"
/translation="LLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPERL
TAKLKEYGLKPTRPDKTEGPLIISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMY
WTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFY
VPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 572..2179
/gene="orf2"
CDS 572..2179
/gene="orf2"
/note="major structural protein"
/codon_start=1
/product="capsid protein"
/protein_id="AAL13007.1"
/translation="MKMASNDAAPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQ
NNVIDPWIRMNFVQAPNGEFTVSPRNSPGEILLNLELGPGLNPFLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKLVFAAIPPHFPIENLSPGQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQEPEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
TVESKTKPFTLPILTIGELSNSRFPAPIDELYTSPNEGLVVQPQNGRSTLDGELLGTT
QLVPSNICSLRGRINAHLSDNQHRWNMQVTNANGTPFDPTEDVPAPLGTPDFLANIYG
VTSQRNPDNTCRAHDGILATWSPKFTPKLGSVVLGTWEDRDFDINQPTRFTPVGLYDT
DHFNQWALPNYSGALTLNMNLAPSVAPLFPGEQLLFFRSHIPLKGGTSNGAIDCLLPQ
EWVQHFYQESAPSSTDVALIRYTNPDTGRVLFEAKLHRQGFITVANSGSRPIVVPPNG
YFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 2179..2961
/gene="orf3"
CDS 2179..2961
/gene="orf3"
/codon_start=1
/product="minor structural protein"
/protein_id="AAL13008.1"
/translation="MAGAFIAGLAGDLLTNSVGSLVNAGANAINQKVDFENNKQLQQA
SFNHDKEMLQAQIQATKQLQADMIALRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG
TRYWAPGATKTTTFSGGFTGSSHARTIDLPKKTPVTPASVPVPRSSSSSASTVSTRST
LVSGSSNFPSSTKSSISVSSQSTSPSSRTSEWVRNQNRALEPYMRGALKTAYVTPPSS
RASSNGTVSTVPKEVLDSWTSVFNTHRQPLFAHLRRRGESQV"
3'UTR 2962..3006
ORIGIN
1 ctcctcaccc tttgtgcact ctctgaagtc acgaacctgt cccctgacat catacaagct
61 aattctctat tttctttcta tggtgatgat gagattgtga gcacagacat aaaattggac
121 ccagaaagat taacagcaaa actgaaagag tatgggctga agccaacccg ccctgacaag
181 actgagggac ccctgatcat ttctgaggac ctggatggtt tgaccttcct gcggagaact
241 gtgacccgcg acccagctgg ctggtttgga aaattggaac aaagctcaat actcaggcag
301 atgtactgga ccagaggccc taatcatgaa gacccatctg aaacaatgat accacattcc
361 caaaggccca tacaactgat gtccctactg ggcgaagctg cactacatgg tccagcattc
421 tacagtaaaa ttagcaaatt agtcattgca gagttgaagg aaggtggcat ggatttttac
481 gtgcccaggc aagagccaat gttcagatgg atgagattct cagacctgag cacgtgggag
541 ggcgatcgca atctggctcc cagttttgtg aatgaagatg gcgtcgaatg acgccgctcc
601 atctaatgat ggtgcagccg gtctcgtacc agaggtcaac aacgagacga tggcactcga
661 accggtggct ggggcttcca tagccgcccc tctaaccggt caaaacaacg tgatagaccc
721 ctggattaga atgaactttg ttcaagcccc aaatggtgaa tttacagtat ctccccgtaa
781 ctctcctggt gaaattctgt taaatttaga attaggtcct ggattaaatc cattcttagc
841 acacctttca aggatgtaca atggttatgc tggcggggtt gaagtgcagg tgctacttgc
901 tgggaacgcg ttcacagcag gaaaactagt gtttgcagca atccccccac atttccctat
961 tgagaacctt agtcctggac agatcacaat gttcccccat gtgatcattg atgttaggac
1021 attagaaccc gtacttttgc ccctcccaga tgttaggaat aatttctttc attataatca
1081 ggagcctgag ccccgtatga ggcttgtggc tatgttgtat acccccctta ggtctaatgg
1141 ttctggtgat gatgtgttta cagtttcttg tagggttctt actcgccctt ccccagattt
1201 tgatttcaat tatttggttc ccccaactgt tgagtctaaa accaaaccat tcaccctacc
1261 aattctgacc attggagagt tgtcaaattc taggttccca gctccaattg acgaactgta
1321 taccagtccc aatgagggct tggttgttca accccaaaac ggcagatcaa cactcgatgg
1381 tgaattgttg ggcaccactc aactcgtgcc ctcaaacatc tgctcactgc gaggacgcat
1441 caatgcccac ttgtcagata accagcaccg ttggaacatg caggtcacaa atgcaaatgg
1501 aactcccttc gaccccaccg aagatgtccc cgcaccacta ggcacaccag acttcctagc
1561 gaacatctat ggagtcacca gccagaggaa ccccgacaac acttgtcgcg cccatgatgg
1621 aattttggcg acttggagcc ccaaatttac acctaagcta gggtctgtgg tcctgggcac
1681 ttgggaagac agagattttg acataaacca acccacgagg tttacacctg ttggtttgta
1741 tgatactgat cactttaatc aatgggcttt accaaattat tctggagcgc tgactctaaa
1801 catgaatttg gcaccctctg tcgcccctct ctttccaggt gagcagctac ttttcttcag
1861 gtcccatata ccactcaaag gaggtacctc taatggtgct attgattgtc tactccccca
1921 ggaatgggtt cagcactttt accaggagtc agctccatcc tctactgacg tggctctaat
1981 caggtacacc aaccctgaca caggacgcgt tttgtttgag gccaaattgc acaggcaggg
2041 atttatcaca gtggcaaact ctggttctag acccattgtt gtccccccaa atggctattt
2101 tagatttgat tcttgggtta atcagtttta ctctcttgcc cccatgggaa ctgggaatgg
2161 gcgcagaaga gtgcagtaat ggctggagct ttcatagcag ggctagctgg tgacttgctc
2221 accaatagtg ttggttcact tgtgaatgct ggagctaatg caataaatca aaaagtggac
2281 tttgaaaaca ataagcaatt acagcaggct tcttttaatc atgataaaga gatgcttcaa
2341 gctcaaatcc aggccactaa acagctacag gctgacatga ttgcactcag gcaaggggtg
2401 ttgaccgcgg gcggcttctc ccctactgat gcagcaagag gggcagttaa cgcgcctatg
2461 acgcaggttt tggactggaa cggaactagg tactgggccc ccggagcaac aaaaacaacc
2521 actttctccg gagggttcac tggctcttcc cacgccagga ctattgatct gcccaagaaa
2581 acaccagtca ctccagcttc agtgcctgta cctagatcca gttcttcttc tgcttctaca
2641 gtctccactc gctcaacact tgttagtggt tcttctaact ttccttcttc aactaagagt
2701 tctattagtg tttcttccca atctacctcc ccgtcctccc ggactagtga atgggtgcgc
2761 aaccaaaata gggcactgga gccttatatg aggggggcac ttaaaacagc ttatgtgaca
2821 cctccttcta gtagggcttc tagtaacggt acagtctcaa ccgtaccaaa ggaagttttg
2881 gactcctgga catctgtgtt caacacccac agacagccgc tcttcgctca tctccgtcgg
2941 agaggggagt cacaagttta gtgaaaagat gattttcctt tcttctttct ttgaaaattt
3001 tgtccc
//