Typing tool
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Complete norovirus genomes
AF414414 | GII.3 | ||
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GII.P3 |
ORF1: 1..591 ORF2: 572..2218 ORF3: 2218..2982LOCUS AF414414 3019 bp ss-RNA linear VRL 26-JUL-2016 DEFINITION Norwalk-like virus NLV/Towson/313/1994/US RNA polymerase (orf1) gene, partial cds; and capsid protein (orf2) and minor structural protein (orf3) genes, complete cds. ACCESSION AF414414 VERSION AF414414.1 KEYWORDS . SOURCE Norwalk-like virus NLV/Towson/313/1994/US ORGANISM Norwalk-like virus NLV/Towson/313/1994/US Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3019) AUTHORS Ando,T., Monroe,S.S., Noel,J.S. and Glass,R.I. TITLE A one-tube method of reverse transcription-PCR to efficiently amplify a 3-kilobase region from the RNA polymerase gene to the poly(A) tail of small round-structured viruses (Norwalk-like viruses) JOURNAL J. Clin. Microbiol. 35 (3), 570-577 (1997) PUBMED 9041391 REFERENCE 2 (bases 871 to 1147) AUTHORS Noel,J.S., Ando,T., Leite,J.P., Green,K.Y., Dingle,K.E., Estes,M.K., Seto,Y., Monroe,S.S. and Glass,R.I. TITLE Correlation of patient immune responses with genetically characterized small round-structured viruses involved in outbreaks of nonbacterial acute gastroenteritis in the United States, 1990 to 1995 JOURNAL J. Med. Virol. 53 (4), 372-383 (1997) PUBMED 9407386 REFERENCE 3 (bases 1 to 3019) AUTHORS Ando,T., Noel,J.S. and Fankhauser,R.L. TITLE Genetic classification of 'Norwalk-like viruses. JOURNAL J. Infect. Dis. 181 (Suppl 2), S336-S348 (2000) PUBMED 10804147 REFERENCE 4 (bases 1 to 3019) AUTHORS Ando,T., Seto,Y., Noel,J.S., Monroe,S.S., Glass,R.I. and Fankhauser,R.L. TITLE Direct Submission JOURNAL Submitted (27-AUG-2001) Viral Gastroenteritis Section/Division of Viral and Rickettsial Diseases/National Center for Infectious Diseases, Centers for Disease Control and Prevention, 1600 Clifton Road, Atlanta, GA 30333, USA FEATURES Location/Qualifiers source 1..3019 /organism="Norwalk-like virus NLV/Towson/313/1994/US" /mol_type="genomic RNA" /strain="Hu/NLV/Towson/313/1994/US" /db_xref="taxon:171846" /clone="pYS13B" /note="NLV/313; NLV/S13; group: GII/3" gene <1..591 /gene="orf1" CDS <1..591 /gene="orf1" /note="nonstructural protein" /codon_start=1 /product="RNA polymerase" /protein_id="AAL12994.1" /translation="LLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPDKL TAKLKEYGLRPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQLY WTRGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFY VPRQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" gene 572..2218 /gene="orf2" CDS 572..2218 /gene="orf2" /note="major structural protein" /codon_start=1 /product="capsid protein" /protein_id="AAL12995.1" /translation="MKMASNDAAPSNDGAAGLVPEINNEAMALEPVAGAAIAAPLTGQ QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG FEVQVVLAGNAFTAGKVIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPINLPMPD VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP TVESKTKLFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT QLLPSQICAFRGTLTRSTSRASDQADTPTPRLFNHRWHIQLDNLNGTPYDPAEDIPAP LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTSGRFTPKLGSLEIITESDDFDTNQS TKFTPVGIGVDNESEFQQWSLPNYSGQFTHNMNLAPAVAPNFLGEQLLFFRSQLPSSG GRSNGVLDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ" gene 2218..2982 /gene="orf3" CDS 2218..2982 /gene="orf3" /codon_start=1 /product="minor structural protein" /protein_id="AAL12996.1" /translation="MAGAFIAGLAGDMLTSTVGSLVNAGANAINQKVDFENNKYLQNA SFNHDKEMLSAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWSG TRYWAPNAASTTSMSGGFTSQVVHRTTPNFKTSQAPKFTPSSGSSVRSSSTQLTNLSS HSSGSSRSSGSTVVSSLPSSSRTRDWVNQQNLNLEPHMPGSLRTAFVTPPPSTASSSG TVSTVPKDVLDSWTSAFNTRRQPLFAHLRRRGESNV" 3'UTR 2983..3019 ORIGIN 1 ttgcttacct tgtgtgccct ttctgaagtg acaggactag gccccgacat catacaagct 61 aattccatgt actctttcta tggtgatgat gagattgtga gcactgacat aaaattggac 121 ccagataaac tgactgcaaa actcaaagag tacggtctca gacccacccg gcccgacaag 181 accgaagggc cgctggtgat cagtgaagac ttgaatggtt taacgttcct tcgccgaaca 241 gtcacccgtg acccagcagg ttggtttgga aagctggagc aaagttccat cctcaggcag 301 ctatactgga caaggggacc taaccatgaa gaccccagtg aaaccatgat accacatgcg 361 cagagacccg tgcagctcat ggcactactg ggagaatcct ccctacatgg accctcattt 421 tacagcaagg tcagcaagct ggttatatct gaacttaagg agggaggaat ggatttttat 481 gtgcccagac aagagtcaat gttcaggtgg atgaggttct cagatctaag cacatgggag 541 ggcgatcgca atctggctcc cagttttgtg aatgaagatg gcgtcgaatg acgctgctcc 601 atctaatgat ggtgccgccg gcctcgtccc agagatcaac aatgaggcaa tggcgctaga 661 gccagtggcg ggtgcagcga tagcagcgcc cctcactggc cagcaaaata taattgatcc 721 ctggattatg aacaattttg tgcaagcacc tggtggtgag tttacagtgt cacctaggaa 781 ttcccctggt gaagtgcttc ttaatttgga attaggtcca gaaataaatc cctatttagc 841 tcatcttgct agaatgtaca atggttatgc aggtggattt gaagtgcaag tggtcctagc 901 tggaaatgcg tttacagcag gaaaggttat ctttgcagct atacccccta atttccctat 961 tgataatctg agcgcggcac agatcacaat gtgcccgcac gtgattgtgg atgtcaggca 1021 gttggaacca atcaatctcc cgatgcctga tgtccgcaac aatttctttc attataatca 1081 aggttctgat tcaagattac gtttgattgc aatgctgtat acacctctta gggcaaacaa 1141 ttctggagat gatgttttta ctgtgtcttg tagggtgtta actaggccca gccctgattt 1201 ctcattcaat tttcttgtcc cacccactgt ggaatcaaag acaaaacttt ttaccctccc 1261 cattttaacc atctctgaaa tgtccaattc caggtttcca gttccaattg actctctgca 1321 cactagccca actgagaata tagttgtcca gtgccaaaat gggcgcgtca ctcttgacgg 1381 tgagttgatg ggcaccaccc aactcttacc gagccaaata tgtgctttca ggggcacact 1441 cactaggtca acaagcaggg ccagtgacca agccgacaca ccaactccca ggctattcaa 1501 ccatcgctgg cacatacaat tggataatct aaatggaact ccctacgacc ctgcagagga 1561 cataccagct cctttgggca caccagactt ccggggcaag gtctttggcg tggccagcca 1621 gagaaacccc gacagcacaa caagggcaca tgaagcaaaa gtggacacaa catctggccg 1681 cttcacccca aaattaggct ccttagaaat aatcacggaa tctgacgact ttgacacaaa 1741 ccagtcaaca aaattcaccc cagttggcat cggagttgac aatgagtcag aatttcagca 1801 atggtcctta cccaactatt ctggtcaatt cactcataat atgaacttag ccccagctgt 1861 tgcccccaat tttcttggtg aacagctact tttcttccgg tcacagctgc catcctctgg 1921 tgggcggtct aacggggttc tagactgcct ggtcccccag gaatgggttc aacactttta 1981 ccaagaatca gcccccgccc aaacgcaggt ggccctggtt aggtatgtca accctgacac 2041 tggtagagtg ctatttgagg ccaagctaca caaattgggt tttatgacta tagcaaagaa 2101 tggtgactcc ccaataactg tccctccaaa tggatacttt agatttgaat cttgggttaa 2161 ccccttttat acacttgccc ccatgggaac tggaaacggg cgtagaagga ttcaataatg 2221 gctggagctt ttatagcagg attggctggt gacatgctca caagcactgt ggggtctttg 2281 gttaatgcag gggccaatgc tattaatcaa aaagttgatt ttgaaaataa taaatatttg 2341 caaaatgctt cttttaatca tgataaggag atgttgagtg cacaaattga ggcaacgaag 2401 aggctgcagg ctgacatgat tgcaatcaag caaggggtct tgaccgctgg cggcttttcc 2461 cccactgatg cagcacgtgg ggcaattaat gccccaatga caaaagtttt agattggagt 2521 ggaacaaggt actgggcacc aaacgccgcc tccacaactt caatgtcagg tggcttcaca 2581 agccaagttg tgcacagaac cacaccaaat ttcaaaacga gccaggcccc caaattcaca 2641 cccagcagtg ggtcttcagt gaggtcaagc tcaacccaac ttaccaactt gagctcacac 2701 tcatccgggt cgtcccgatc tagcgggtct acagttgtca gctcgctgcc gtcctccagt 2761 aggactaggg actgggtcaa ccaacaaaat ctcaatttgg aaccacacat gcctggatct 2821 ctcaggacag cttttgtcac tccaccacct agcacagcct ctagttcagg cacagtctca 2881 accgtgccca aagatgtttt ggactcctgg acatctgcgt ttaacacgcg cagacagccg 2941 ctgtttgcac accttcgtag aaggggggag tcaaatgttt agtgaaaaga ttattcctaa 3001 atttgattta gaatcttag //