Typing tool
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Typing tool
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Complete norovirus genomes
| AF414412 | GII.3 | |
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| GII.P3 |
ORF1: 1..591
ORF2: 572..2218
ORF3: 2218..2982
LOCUS AF414412 3020 bp ss-RNA linear VRL 26-JUL-2016
DEFINITION Norwalk-like virus NLV/New Orleans/279/1994/US RNA polymerase
(orf1) gene, partial cds; and capsid protein (orf2) and minor
structural protein (orf3) genes, complete cds.
ACCESSION AF414412
VERSION AF414412.1
KEYWORDS .
SOURCE Norwalk-like virus NLV/New Orleans/279/1994/US
ORGANISM Norwalk-like virus NLV/New Orleans/279/1994/US
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3020)
AUTHORS Ando,T., Monroe,S.S., Noel,J.S. and Glass,R.I.
TITLE A one-tube method of reverse transcription-PCR to efficiently
amplify a 3-kilobase region from the RNA polymerase gene to the
poly(A) tail of small round-structured viruses (Norwalk-like
viruses)
JOURNAL J. Clin. Microbiol. 35 (3), 570-577 (1997)
PUBMED 9041391
REFERENCE 2 (bases 871 to 1147)
AUTHORS Noel,J.S., Ando,T., Leite,J.P., Green,K.Y., Dingle,K.E.,
Estes,M.K., Seto,Y., Monroe,S.S. and Glass,R.I.
TITLE Correlation of patient immune responses with genetically
characterized small round-structured viruses involved in outbreaks
of nonbacterial acute gastroenteritis in the United States, 1990 to
1995
JOURNAL J. Med. Virol. 53 (4), 372-383 (1997)
PUBMED 9407386
REFERENCE 3 (bases 1 to 3020)
AUTHORS Ando,T., Noel,J.S. and Fankhauser,R.L.
TITLE Genetic classification of 'Norwalk-like viruses.
JOURNAL J. Infect. Dis. 181 (Suppl 2), S336-S348 (2000)
PUBMED 10804147
REFERENCE 4 (bases 1 to 3020)
AUTHORS Ando,T., Seto,Y., Noel,J.S., Monroe,S.S., Glass,R.I. and
Fankhauser,R.L.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2001) Viral Gastroenteritis Section/Division of
Viral and Rickettsial Diseases/National Center for Infectious
Diseases, Centers for Disease Control and Prevention, 1600 Clifton
Road, Atlanta, GA 30333, USA
FEATURES Location/Qualifiers
source 1..3020
/organism="Norwalk-like virus NLV/New Orleans/279/1994/US"
/mol_type="genomic RNA"
/strain="Hu/NLV/New Orleans/279/1994/US"
/db_xref="taxon:171844"
/clone="pYS11C"
/note="NLV/279; NLV/S11;
group: GII/3"
gene <1..591
/gene="orf1"
CDS <1..591
/gene="orf1"
/note="nonstructural protein"
/codon_start=1
/product="RNA polymerase"
/protein_id="AAL12988.1"
/translation="LLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKL
TAKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQLY
WTRGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFY
VPRQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 572..2218
/gene="orf2"
CDS 572..2218
/gene="orf2"
/note="major structural protein"
/codon_start=1
/product="capsid protein"
/protein_id="AAL12989.1"
/translation="MKMASNDAAPSSDGAAGLVPEINNEAMALEPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKVIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPINLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKLFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGTLTRSTSRASDQADTPTPRLFNYYWHIQLDNLNGTPYDPAEDIPAP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTSGRFTPKLGSLEISTESDDFDPNQP
TKFTPVGIGVDNEADFQQWSLPNYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQRPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
gene 2218..2982
/gene="orf3"
CDS 2218..2982
/gene="orf3"
/codon_start=1
/product="minor structural protein"
/protein_id="AAL12990.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWSG
TRYWAPNATSTTSMSGGFTSQVVHRTTPNFTTSQTPKFTPSSGSSVRSSSTQLTNLSS
HSSGSSRSSGSTVVSSLPSSSRTRDWVNQQNLNLEPYMPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
3'UTR 2983..3020
ORIGIN
1 ttgcttactc tgtgtgccct ttctgaagtg acaggactag gccccgacat catacaagct
61 aattccatgt actctttcta tggtgatgat gagattgtga gcactgacat aaaactggac
121 ccagagaaac tgactgcaaa acttaaagag tacggcctca aacccactcg gcccgacaaa
181 accgaagggc cactggtgat cagtgaagac ttgaatggtt taacattcct ccgccgaacg
241 gtcacccgtg acccagcagg ttggtttgga aagctggagc agagttccat cctcaggcag
301 ctatactgga caagaggacc taaccatgaa gaccccagtg aaaccatgat accacatgcg
361 cagagacccg tgcagctcat ggcactactg ggagaatcct ccctacatgg accctcattt
421 tacagcaagg tcagcaagct ggtaatatct gaacttaagg agggaggaat ggatttttat
481 gtgcccagac aagagtcaat gttcaggtgg atgaggttct cagatctaag cacatgggag
541 ggcgatcgca atctggctcc cagttttgtg aatgaagatg gcgtcgaatg acgctgctcc
601 atctagtgat ggtgccgccg gcctcgtccc agagatcaac aatgaggcaa tggcgctaga
661 gccagtggcg ggtgcagcga tagcagcgcc cctcactggc cagcaaaata taattgatcc
721 ctggattatg aataattttg tgcaagcacc tggtggtgag tttacagtgt cacctaggaa
781 ttcccctggt gaagtgcttc ttaatttgga attaggccca gaaataaatc cctatttggc
841 tcatcttgct agaatgtaca atggttatgc aggtggattt gaagtgcaag tggtcctagc
901 tggaaatgcg tttacagcag gaaaggttat ctttgcagct atacccccta atttccctat
961 tgacaatctg agcgcggcac agatcacaat gtgtccgcac gtgattgtgg atgtcaggca
1021 gttggaacca atcaacctcc cgatgcctga tgtccgcaac aatttctttc attataatca
1081 aggttctgat tcaagattac gcttgattgc aatgctgtat acacctctta gggcaaacaa
1141 ttctggagat gatgttttca ctgtgtcttg tagggtgtta actaggccta gccctgattt
1201 ctcatttaat tttcttgtcc cacccactgt ggaatcaaag acaaaacttt ttaccctccc
1261 cattttaacc atctctgaaa tgtctaattc caggtttccg gtgccaattg actctctgca
1321 caccagccca actgagaata tagttgtcca gtgccaaaat gggcgcgtca ctcttgacgg
1381 tgagttaatg ggcaccaccc aactcttacc aagccaaata tgtgctttca ggggcacact
1441 cactagatca acaagcaggg ccagtgacca agccgacaca ccaaccccta ggctattcaa
1501 ctattattgg cacatacaat tggataatct aaatggaact ccctacgacc ctgcagagga
1561 cataccagct cctttgggca caccggactt ccggggcaag gtctttggcg tagccagcca
1621 gagaaacccc gacagcacaa caagggcaca tgaagcaaaa gtggacacaa catctggccg
1681 cttcacccca aaattgggct ccttagaaat aagcactgaa tctgatgact ttgacccaaa
1741 ccagccaaca aaattcaccc cagttggcat tggagttgac aatgaggcag attttcaaca
1801 atggtcctta cctaactatt ctggtcagtt tactcataat atgaatttag ccccagctgt
1861 cgcccccaat tttcctggtg aacagctact tttcttccga tcacagcggc catcctctgg
1921 tgggcggtct aacgggattc tagactgcct ggtcccccag gaatgggttc aacactttta
1981 ccaagaatcg gcccccgcac aaacacaggt ggccctggtt aggtatgtca accctgacac
2041 tggtagagtg ctatttgagg ccaagctaca caaattgggt tttatgacta tagcaaagaa
2101 tggtgattcc ccaataactg tccctccaaa tggatatttt agatttgaat cttgggttaa
2161 ccccttttac acacttgccc ccatgggaac tggaaacggg cgtagaagga ttcaataatg
2221 gctggagctt ttatagcagg attggctggt gacatgctca caaacactgt ggggtctttg
2281 gttaatgcag gggctaatgc tatcaaccaa aaagttgatt ttgaaaataa taaatatttg
2341 caaaatgctt cttttaatca tgataaggag atgttaaatg cacaaattga ggcaacaaag
2401 agactgcagg ctgatatgat tgcaatcaaa caaggggtct tgaccgctgg cggcttttcc
2461 cccactgatg cagcacgtgg ggcaattaat gccccaatga caaaagtttt agactggagt
2521 ggaacaaggt actgggcacc aaacgccacc tccacaactt caatgtcagg tggcttcaca
2581 agccaagttg tgcacagaac cacaccaaat tttacaacga gccagacccc caaattcaca
2641 cccagcagtg ggtcttcagt gagatcaagc tcaacccaac tcaccaacct gagctcacat
2701 tcatccgggt cgtcccgatc tagcgggtct actgttgtca gctcgctgcc gtcctccagt
2761 aggactaggg actgggtcaa tcaacaaaat ctcaatttgg aaccatacat gcctggatct
2821 ctcaggacag cttttgtcac tccaccatct agcacagcct ctagttcagg cacagtctca
2881 accgtgccca aaaatgtttt ggactcctgg acatctgcgt tcaacacgcg cagacagccg
2941 ctgtttgcac acctccgtag aaggggggag tcaaatgttt agtgaaaaga ttattcctaa
3001 atttgattta gaatcttcgc
//