Typing tool
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Typing tool
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Complete norovirus genomes
| AF414409 | GII.7 | |
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| GII.P7 |
ORF1: 1..591
ORF2: 572..2194
ORF3: 2194..2967
LOCUS AF414409 3035 bp ss-RNA linear VRL 26-JUL-2016
DEFINITION Norwalk-like virus NLV/Gwynedd/273/1994/US RNA polymerase (orf1)
gene, partial cds; and capsid protein (orf2) and minor structural
protein (orf3) genes, complete cds.
ACCESSION AF414409
VERSION AF414409.1
KEYWORDS .
SOURCE Norwalk-like virus NLV/Gwynedd/273/1994/US
ORGANISM Norwalk-like virus NLV/Gwynedd/273/1994/US
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3035)
AUTHORS Ando,T., Monroe,S.S., Noel,J.S. and Glass,R.I.
TITLE A one-tube method of reverse transcription-PCR to efficiently
amplify a 3-kilobase region from the RNA polymerase gene to the
poly(A) tail of small round-structured viruses (Norwalk-like
viruses)
JOURNAL J. Clin. Microbiol. 35 (3), 570-577 (1997)
PUBMED 9041391
REFERENCE 2 (bases 1 to 81)
AUTHORS Noel,J.S., Ando,T., Leite,J.P., Green,K.Y., Dingle,K.E.,
Estes,M.K., Seto,Y., Monroe,S.S. and Glass,R.I.
TITLE Correlation of patient immune responses with genetically
characterized small round-structured viruses involved in outbreaks
of nonbacterial acute gastroenteritis in the United States, 1990 to
1995
JOURNAL J. Med. Virol. 53 (4), 372-383 (1997)
PUBMED 9407386
REFERENCE 3 (bases 1 to 3035)
AUTHORS Ando,T., Noel,J.S. and Fankhauser,R.L.
TITLE Genetic classification of 'Norwalk-like viruses.
JOURNAL J. Infect. Dis. 181 (Suppl 2), S336-S348 (2000)
PUBMED 10804147
REFERENCE 4 (bases 1 to 3035)
AUTHORS Ando,T., Seto,Y., Noel,J.S., Monroe,S.S., Glass,R.I. and
Fankhauser,R.L.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2001) Viral Gastroenteritis Section/Division of
Viral and Rickettsial Diseases/National Center for Infectious
Diseases, Centers for Disease Control and Prevention, 1600 Clifton
Road, Atlanta, GA 30333, USA
FEATURES Location/Qualifiers
source 1..3035
/organism="Norwalk-like virus NLV/Gwynedd/273/1994/US"
/mol_type="genomic RNA"
/strain="Hu/NLV/Gwynedd/273/1994/US"
/db_xref="taxon:171841"
/clone="S08b3724"
/note="NLV/Gwynedd; NLV/273; NLV/S08;
group: GII/7"
gene <1..591
/gene="orf1"
CDS <1..591
/gene="orf1"
/note="nonstructural protein"
/codon_start=1
/product="RNA polymerase"
/protein_id="AAL12979.1"
/translation="ILTLSAMAEVSGLSPDVVQAHSCFSFYGDNEIVSTDINLDPMKL
TQKLREYGLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLY
WTRGPNHENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFY
VPRQEAMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
gene 572..2194
/gene="orf2"
CDS 572..2194
/gene="orf2"
/note="major structural protein"
/codon_start=1
/product="capsid protein"
/protein_id="AAL12980.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEVMPLEPVAGASLATPVVGQ
QNIIDPWIRNNFVQAPAGEFTVSPRNSPGEILLDLELGPELNPYLAHLARMYNGHAGG
MEVQIVLAGNAFTAGKIIFAAIPPGFPYENLSPSQITMCPHVIIDVRQLEPVLLPMPD
IRNNFFHYNQGNDPKLRLVAMLYTPLRANNSGDDVFTVSCRVLTKPSPDFEFTFLVPP
TVESKTKQFTLPILKISEMTNSRFPVPVEMMYTSRNENQVVQPQNGRVTLDGELLGTT
PLLAVNICKFKGEVIAKNGDVRSYRMDMEITNTDGTPIDPTEDTPGPIGSPDFQGILF
GVASQRNKNEQNPATRSHEANINTGGDQYAPKLAQVKIFSQSQDFEVHQPTVFTPVGV
AGDTSHPFRQWTLPRYGGHLTNNTHLAPAVAPLFPGEQILFFRSQIPSSGGHELGYMD
CLVPQEWVQHFYQEAATAQSEVALIRFINPDTGRVLFEAKLHKQGFITVAHTGDNPIV
MPPNGYFRFEAWVNQFYSLAPVGTGNGRRRIQ"
gene 2194..2967
/gene="orf3"
CDS 2194..2967
/gene="orf3"
/codon_start=1
/product="minor structural protein"
/protein_id="AAL12981.1"
/translation="MASTFFANLAGGVAFNGISSLINAGANAINQKVEFDYNKQLQNA
PFSHDKEMLQAQIEATKRLQQEMIDIKQGVLTAAGFSPTDAARGSVGAPMTKLVDWSG
TRYWAPGAMRTTGYSGTFTHLPPMQSASYVNNQNRQPLKVGPSPPSSSGSSASSVKTQ
STTLSGTSRVGSSSQSTLSTRPSTRTSDWVRSQNERLSPFMNGALQTTYVTPPSSRAS
SVSTVSTVPKEVLDSWTPMFNTHRQPLFVHLRRRGESQT"
3'UTR 2968..3035
ORIGIN
1 atcctaactt tgagtgcaat ggcagaagtg tcaggtctct caccagatgt tgtccaagcc
61 cactcctgtt tttcatttta tggagacaat gagatcgtca gcactgatat taaccttgac
121 cccatgaagt taacacagaa actcagagag tacggtctgg tccccacccg gcctgacaaa
181 actgaaggtc ccctcgttat aactgaagac ctcaccggcc tgacgtttct tcgtaggtcg
241 attgcacggg atccagccgg gtggtttgga aaattggacc aagactcaat cctcaggcaa
301 ttatactgga caagggggcc taaccatgag aacccatacg agagcatggt ccctcattct
361 cagcgggcca cacagctcat ggcccttctt ggtgaggctt cactgcatgg tccccagttt
421 tacaagaagg ttagcaagat ggtcatcaat gagattaaga gtggtggtct ggaattttat
481 gtgcccagac aagaggccat gttcaggtgg atgagattct ctgacctcag cacatgggag
541 ggcgatcgca atcttgctcc cgaaggtgtg aatgaagatg gcgtcgaatg acgcagctcc
601 atctaatgat ggtgcagcag gcctcgtacc agagatcaac aatgaggtca tgccccttga
661 gcccgtggct ggtgcatcgc tggcgacacc agttgttggg caacaaaaca taattgatcc
721 ctggataaga aataattttg tacaagctcc tgcaggtgag tttacagttt cccctaggaa
781 ttcccccggt gaaatcttgc ttgatttaga gttgggacca gaattgaacc cctaccttgc
841 tcatctggcc cgtatgtata atgggcacgc tggtggcatg gaagtgcaaa ttgtgttggc
901 tgggaatgcg ttcacagctg gcaagatcat atttgctgcc atccctccag ggttcccata
961 tgaaaacttg tcaccttcac agattacaat gtgcccacat gttataattg atgtgagaca
1021 attagaacca gtcctattgc ctatgccaga cattagaaat aatttcttcc attataatca
1081 gggcaatgat ccaaaattga ggttggtggc tatgctctat actcctttaa gggctaataa
1141 ttctggtgat gatgtgttca cagtctcttg tagggtcctt actaaaccat ctcctgattt
1201 tgaattcaca tttctagttc cccctacagt tgaatccaaa accaagcagt ttacattgcc
1261 cattctcaaa atatcagaga tgaccaattc aagattccca gtgccagtgg aaatgatgta
1321 tacatccagg aatgagaatc aagtagtcca accacagaat ggtagggtca cgctcgatgg
1381 tgagctattg ggcaccacac ccttgttggc tgtcaacata tgcaaattca agggagaggt
1441 tatagctaag aatggagatg tgagatccta cagaatggac atggaaatta ccaacactga
1501 tggcacccca attgacccca cagaagacac acctggtccc attggctcac cagatttcca
1561 aggcatactc tttggcgttg ccagccagcg caataagaat gagcaaaacc ccgccacaag
1621 atcccatgaa gctaatatta acactggtgg ggaccaatat gcccctaaat tggcccaagt
1681 gaagatcttt tcacagtccc aggattttga ggtgcaccag cccacagtct tcaccccagt
1741 cggtgtggca ggcgacactt cccacccttt caggcagtgg accctgcctc gatacggcgg
1801 acatctcacc aataacaccc acttggctcc agcagtggcc cctctgttcc caggtgagca
1861 gatcctattc tttagatcac aaatacctag ctcaggcggc catgaattgg gctatatgga
1921 ctgtcttgtc ccacaagagt gggtccaaca cttctatcag gaagctgcca cagctcagtc
1981 tgaggtggca ctcataaggt tcatcaaccc agacactggt agagtcctct ttgaggccaa
2041 gctgcacaag caaggcttca taactgtggc tcacaccggt gataacccaa ttgtcatgcc
2101 accaaacggg tactttagat ttgaagcatg ggttaatcag ttttactcac tcgcccccgt
2161 gggaactggg aatgggcgca ggaggatcca ataatggcta gtactttctt tgcaaatctg
2221 gcaggaggcg ttgccttcaa tggaattagt tcactcataa atgctggggc caacgctatt
2281 aatcaaaagg ttgagtttga ttataacaaa caacttcaaa acgcaccctt ctcccatgac
2341 aaggaaatgc tccaagccca aattgaagcc actaaacgcc tgcaacaaga gatgattgac
2401 ataaaacaag gtgtgttgac agctgcggga ttctctccca cggatgccgc gaggggttct
2461 gtcggcgcgc caatgacaaa attggttgat tggagtggca ctagatactg ggcacctggt
2521 gccatgagga caacgggcta ttcagggaca tttactcact taccccctat gcagtctgct
2581 tcatacgtta ataatcaaaa tagacaacct cttaaggtag gtccttctcc tccttcttcg
2641 agtggttctt ctgcttcttc tgtcaaaaca cagtcaacta ccctttcggg cacttcaagg
2701 gtgggctctt cgtcacagtc aaccctgtcg accaggccga gcacaagaac atctgattgg
2761 gtgcgtagcc aaaatgaaag gttgagcccc tttatgaatg gggcgttgca aacgacgtat
2821 gtgacgccac catccagtag ggcatcaagt gtcagcacag tctcgaccgt gccgaaagag
2881 gttttggact cctggacgcc tatgtttaac actcacaggc agccactctt cgtccactta
2941 cgtaggcgag gggagtcaca gacttagtga aaagattgat tggaaagttt gattagtttg
3001 ttcttctttt ctactattcc tttaattctt tcttt
//