Typing tool
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Typing tool
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Complete norovirus genomes
| AF414406 | GI.5 | |
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|---|---|---|---|
| GI.P5 |
ORF1: 1..588
ORF2: 572..2203
ORF3: 2203..2832
LOCUS AF414406 2923 bp ss-RNA linear VRL 26-JUL-2016
DEFINITION Norwalk-like virus NLV/Appalachicola Bay/318/1995/US RNA polymerase
(orf1) gene, partial cds; and capsid protein (orf2) and minor
structural protein (orf3) genes, complete cds.
ACCESSION AF414406
VERSION AF414406.1
KEYWORDS .
SOURCE Norwalk-like virus NLV/Appalachicola Bay/318/1995/US
ORGANISM Norwalk-like virus NLV/Appalachicola Bay/318/1995/US
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 2923)
AUTHORS Ando,T., Monroe,S.S., Noel,J.S. and Glass,R.I.
TITLE A one-tube method of reverse transcription-PCR to efficiently
amplify a 3-kilobase region from the RNA polymerase gene to the
poly(A) tail of small round-structured viruses (Norwalk-like
viruses)
JOURNAL J. Clin. Microbiol. 35 (3), 570-577 (1997)
PUBMED 9041391
REFERENCE 2 (bases 871 to 1147)
AUTHORS Noel,J.S., Ando,T., Leite,J.P., Green,K.Y., Dingle,K.E.,
Estes,M.K., Seto,Y., Monroe,S.S. and Glass,R.I.
TITLE Correlation of patient immune responses with genetically
characterized small round-structured viruses involved in outbreaks
of nonbacterial acute gastroenteritis in the United States, 1990 to
1995
JOURNAL J. Med. Virol. 53 (4), 372-383 (1997)
PUBMED 9407386
REFERENCE 3 (bases 1 to 2923)
AUTHORS Ando,T., Noel,J.S. and Fankhauser,R.L.
TITLE Genetic classification of 'Norwalk-like viruses.
JOURNAL J. Infect. Dis. 181 (Suppl 2), S336-S348 (2000)
PUBMED 10804147
REFERENCE 4 (bases 1 to 2923)
AUTHORS Ando,T., Seto,Y., Noel,J.S., Monroe,S.S., Roger,G.I. and
Fankhauser,R.L.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2001) Viral Gastroenteritis Section/Division of
Viral and Rickettsial Diseases/National Center for Infectious
Diseases, Centers for Disease Control and Prevention, 1600 Clifton
Road, Atlanta, GA 30333, USA
FEATURES Location/Qualifiers
source 1..2923
/organism="Norwalk-like virus NLV/Appalachicola
Bay/318/1995/US"
/mol_type="genomic RNA"
/strain="Hu/NLV/Appalachicola Bay/318/1995/US"
/db_xref="taxon:171838"
/clone="pYS05C"
/note="NLV/318; NLV/S05;
group: GI/5"
gene <1..588
/gene="orf1"
CDS <1..588
/gene="orf1"
/note="nonstructural protein"
/codon_start=1
/product="RNA polymerase"
/protein_id="AAL12970.1"
/translation="LNTLCALSEVTGLSPDVIQSQSYFSFYGDDEIVSTDIEFDPARL
TQVLKEYGLHPTRPDKSEGPIVLRKQIDGLVFLRRTISKDAAGFQGRLDRGSIERQLW
WTRGPNHDDPNETLIPHPQRKVQLISLLGEASLHGEKFYRKIAAKVIQEVKTGGLEMY
VPGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDGV"
gene 572..2203
/gene="orf2"
CDS 572..2203
/gene="orf2"
/note="major structural protein"
/codon_start=1
/product="capsid protein"
/protein_id="AAL12971.1"
/translation="MMMASKDASPSADGANGAGQLVPEVNNAEPLPLDPVAGASTALA
TAGQVNMIDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSQMYNG
WVGNMRVRVILAGNAFTAGKVIVCCVPPGFQSRTLSIAQATLFPHIIADVRTLEPIEI
PLEDVRNTLYHTNDNQPTMRLLCMLYTPLRTGGGSGGTDAFVVAGRVLTCPSSDFNFL
FLVPPTVEQKTRPFSVPNIPLQLLSNSRVPNLIQSMVPSPDQAQNVQFQNGRCTTDGQ
LLGTTPVSVSQILKFRGKVSAGSRVINLTELDGSPFLAFEAPAPTGFPDLGTSDWHVE
MSLNSNSQSSGNPILLRDIQPNSSDFVPHLGSVAVTTAIDVAGDYTGTIQWTSQPSNV
TPVPDVNFWTIPQYGSNLAEASQLAPVVYPPGFGEAIVYFMSPIPGPNTAHKPNLVPR
LLPQEFVTHFVSEQAPSMGEAALVHYVDPDTNRNLGEFKLYPEGFVTCMPNGTGPQQL
PLNGVFVFASWVSRFYQLKPVGTASSARGRLGVRR"
gene 2203..2832
/gene="orf3"
CDS 2203..2832
/gene="orf3"
/codon_start=1
/product="minor structural protein"
/protein_id="AAL12972.1"
/translation="MAQAIIGAIAASAAGSALGAGIQAGAEAALQSQRFQQDLTLQQN
SFKHDREMMSYQVEMSNALLAKNLNTRYALLQFGGLSSADAARAVAGAPVTRIVDWNG
TRVAAPNSSATTLRSGGFMSVPIPTQPKQKSPTTSGFNNPAYGETMSRVSSWVQSQNS
SSRSMPPFHNSALRTVWVTPPGSTSSSSVSSVPMGVFNTDRLPLFANRR"
3'UTR 2833..2923
ORIGIN
1 ctaaataccc tctgtgccct ctctgaggtt actggactct ctcctgatgt aatacagtca
61 cagtcatact tctcatttta tggtgatgat gaaattgtgt ccactgacat tgaatttgat
121 ccagcacgtt tgacccaggt gctcaaggaa tatggtctcc accccacacg cccagacaag
181 agtgaggggc caatagtgtt aaggaaacaa attgatggac tagtgttcct cagaaggact
241 atatcaaaag atgcagctgg ttttcaaggc cgattggaca ggggttctat tgagagacaa
301 ctctggtgga cccgtggccc aaaccacgat gaccccaatg agaccctgat accccacccg
361 caaaggaaag tgcaactcat atcactactt ggtgaggcct cactccatgg tgaaaagttt
421 tacagaaaga tcgccgccaa ggtcatccaa gaagtcaaga ctggtggttt ggagatgtat
481 gtgccaggct ggcaggccat gttccgctgg atgcgcttcc atgacctcgg attgtggaca
541 ggagatcgca atcttctgcc cgaattcgta aatgatgatg gcgtctaagg acgcttcacc
601 aagcgcagat ggcgcaaatg gcgccggtca gcttgtgccg gaggttaata atgctgaacc
661 actgccactt gatccggtgg cgggagcttc caccgctctt gccactgctg ggcaagttaa
721 tatgattgac ccatggattt tcaacaactt tgtccaggcc cctcagggtg aattcactat
781 atccccaaat aacacccccg gcgatatcct gtttgatttg caattaggcc cgcacctaaa
841 tcctttccta gcacatttgt cccagatgta taatggctgg gttggcaaca tgcgagtcag
901 ggtcatcctg gctggcaatg ccttcactgc tggtaaagtt atagtatgtt gtgtccctcc
961 tggttttcaa tctaggaccc tttctatagc tcaggccaca ctctttcccc acatcatagc
1021 tgatgtgcga actttagaac caattgagat ccccctagag gatgttagga acacacttta
1081 tcataccaat gataatcaac caacaatgcg tctgttgtgc atgctttaca cgccactgcg
1141 cactggtggt ggctctggcg gtacagatgc atttgttgtg gcaggccgag ttctaacttg
1201 ccctagctct gattttaatt tcttgttcct ggtcccaccc accgtggagc agaagacccg
1261 cccctttagt gtgcccaata tacccttgca gttactttcc aattcccgtg ttcccaatct
1321 tatacaaagc atggttcctt cgcctgacca ggcccagaat gttcaattcc agaatggccg
1381 ctgcactact gatgggcagc ttttaggcac aacacctgtt tctgttagcc agatattaaa
1441 gtttagagga aaggtgtcag ctggctctag agtcattaac cttactgaac tggatggttc
1501 ccccttcttg gcttttgagg ccccagcacc cacaggtttc cctgacttgg gaaccagtga
1561 ctggcatgtt gaaatgagcc ttaattcaaa tagtcaaagt tctggcaacc caattctatt
1621 gagggacata cagccaaatt cttctgattt tgtgccacac ttgggcagtg tggctgtcac
1681 cactgcaatt gatgtggctg gggattacac tggtacaatc cagtggactt cccaaccatc
1741 caatgtcacc ccagtccctg atgtcaactt ctggaccatc ccccagtacg ggtcaaattt
1801 ggcagaagct tcccagcttg cccctgtagt gtacccccca ggatttggtg aggctatagt
1861 gtactttatg tcccccatac caggccctaa cacagcacac aaacccaatt tggtaccccg
1921 cctactccca caagaatttg tgactcattt tgtcagtgaa caagccccat ccatgggtga
1981 ggcagctctc gtccactatg tagacccaga caccaaccgc aacttgggcg agttcaaact
2041 gtatcctgaa ggtttcgtca cttgtatgcc aaatggtact ggtccacaac aacttcctct
2101 taatggagtc tttgtctttg cctcttgggt gtccagattc tatcaattaa agcctgtggg
2161 aacggccagc tcggccagag gtaggcttgg agtcagaaga taatggccca agctattatt
2221 ggagccattg ctgcatcggc ggctgggagc gctcttggag ctggtatcca ggcaggcgct
2281 gaagctgccc tccaaagcca gaggtttcag caggacctca ctcttcaaca gaactcattt
2341 aagcatgata gggagatgat gtcatatcaa gttgaaatgt ctaatgcatt attagctaaa
2401 aatcttaata ctcgctatgc tttgctccaa tttggtggtc tgtctagtgc tgatgctgct
2461 cgtgctgtgg caggtgctcc tgtcacaagg attgttgact ggaatggcac gagggtggca
2521 gccccaaatt cttctgctac tactcttagg tctggtggct ttatgtctgt ccctatacct
2581 acacagccta aacaaaagtc ccccaccact tcagggttta acaatccagc atatggagaa
2641 actatgtcaa gggtttcctc ctgggtccag tcccaaaact caagttctag gagcatgccc
2701 ccttttcaca actctgccct taggactgtt tgggttacac caccaggttc aacttcctct
2761 tcatctgttt catctgtgcc tatgggtgtg ttcaataccg ataggcttcc cttattcgca
2821 aataggagat aatattgttg taataagaat aacaatgtgg gcatcctatt caatttgatc
2881 tgattaatta tatgattagg tttgatttgg acaattgatg gtg
//