Typing tool
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Typing tool
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Complete norovirus genomes
| AF414405 | GI.3 | |
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|---|---|---|---|
| GI.P3 |
ORF1: 1..588
ORF2: 572..2209
ORF3: 2209..2856
LOCUS AF414405 2927 bp ss-RNA linear VRL 26-JUL-2016
DEFINITION Norwalk-like virus NLV/Little Rock/316/1994/US RNA polymerase
(orf1) gene, partial cds; and capsid protein (orf2) and minor
structural protein (orf3) genes, complete cds.
ACCESSION AF414405
VERSION AF414405.1
KEYWORDS .
SOURCE Norwalk-like virus NLV/Little Rock/316/1994/US
ORGANISM Norwalk-like virus NLV/Little Rock/316/1994/US
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 2927)
AUTHORS Ando,T., Monroe,S.S., Noel,J.S. and Glass,R.I.
TITLE A one-tube method of reverse transcription-PCR to efficiently
amplify a 3-kilobase region from the RNA polymerase gene to the
poly(A) tail of small round-structured viruses (Norwalk-like
viruses)
JOURNAL J. Clin. Microbiol. 35 (3), 570-577 (1997)
PUBMED 9041391
REFERENCE 2 (bases 871 to 1147)
AUTHORS Noel,J.S., Ando,T., Leite,J.P., Green,K.Y., Dingle,K.E.,
Estes,M.K., Seto,Y., Monroe,S.S. and Glass,R.I.
TITLE Correlation of patient immune responses with genetically
characterized small round-structured viruses involved in outbreaks
of nonbacterial acute gastroenteritis in the United States, 1990 to
1995
JOURNAL J. Med. Virol. 53 (4), 372-383 (1997)
PUBMED 9407386
REFERENCE 3 (bases 1 to 2927)
AUTHORS Ando,T., Noel,J.S. and Fankhauser,R.L.
TITLE Genetic classification of 'Norwalk-like viruses.
JOURNAL J. Infect. Dis. 181 (Suppl 2), S336-S348 (2000)
PUBMED 10804147
REFERENCE 4 (bases 1 to 2927)
AUTHORS Ando,T., Seto,Y., Noel,J.S., Monroe,S.S., Glass,R.I. and
Fankhauser,R.L.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2001) Viral Gastroenteritis Section/Division of
Viral and Rickettsial Diseases/National Center for Infectious
Diseases, Centers for Disease Control and Prevention, 1600 Clifton
Road, Atlanta, GA 30333, USA
FEATURES Location/Qualifiers
source 1..2927
/organism="Norwalk-like virus NLV/Little Rock/316/1994/US"
/mol_type="genomic RNA"
/strain="Hu/NLV/Little Rock/316/1994/US"
/db_xref="taxon:171837"
/clone="pYS04B"
/note="NLV/316; NLV/S04;
group: GI/3"
gene <1..588
/gene="orf1"
CDS <1..588
/gene="orf1"
/note="nonstructural protein"
/codon_start=1
/product="RNA polymerase"
/protein_id="AAL12967.1"
/translation="ILTLCALSEVTGLSPDVIQSQSYFSFYGDDEIVSTDIEFDPIRL
TQILKEYGLRPTRPDKTDGPIIVRQQVDGLVFLRRTISKDAIGYQGRLDRNSIERQLW
WTRGPNHEDPFETLVPHSQRKIQLISLLGEAALHGEKFYRKIAGRVIQEVKEGGLEIY
IPGWQAMFRWMRFHDLSLWTGDRDLLPDYVNDDGV"
gene 572..2209
/gene="orf2"
CDS 572..2209
/gene="orf2"
/note="major structural protein"
/codon_start=1
/product="capsid protein"
/protein_id="AAL12968.1"
/translation="MMMASKDAPPNMDGTSGAGQLVPEANTAEPISMEPVAGAATAAA
TAGQVNMIDPWIMNNYVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLSHLAQMYNG
WVGNMKVKVLLAGNAFTAGKIIISCIPPGFAAQNISIAQATMFPHVIADVRVLEPIEV
PLEDVRNVLFHNNDNTPTMRLVCMLYTPLRASGSSSGTDPFVIAGRVLTCPSPDFSFL
FLVPPNVEQKTKPFSVPNLPLNTLSNSRVPSLIKSMMVSRDHGQMVQFQNGRVTLDGQ
LQGTTPTSASQLCKIRGSVFHANGGNGYNLTELDGSPYHAFESPAPIGFPDLGECDWH
MEASPTTQFDTGDVIKQINVKQESAFAPHLGTIQAGGLSDVSVNTNMIAKLGWVSPVS
DGHRGNVDPWVIPRYGSTLTEAAQLAPPIYPPGFGEAIVFFMSDFPIAHGTNGLSVPF
TIPQEFVTHFVNEQAPTRGEAALLYYLDPDTHRNLGEFKLYPEGFMTCVPNSSGTGPQ
TLPINGVFVFVSWVSRFYQLKPVGTAGPARRLGIRRS"
gene 2209..2856
/gene="orf3"
CDS 2209..2856
/gene="orf3"
/codon_start=1
/product="minor structural protein"
/protein_id="AAL12969.1"
/translation="MAQAILGAIAATAAGSAVGAGIQAGTEAALQHQRFQQDLTLQKN
SFIHDKEMMGLQVEASTVLLQNSLGTRYNMLTKAGMTSADAARMVVGAPTTRVIDWNG
TRVAAPMSTATTLRSGGFMTVPTVYRGGKNKQSIGGGFSNVNYDPSVSSSRTSQWVSS
QNSMRSTLEPFHPGALRTTWVTPPGSTSTSTISTVSTVPKFFNTERLPLFANRGK"
3'UTR 2857..2927
ORIGIN
1 atcctaactc tatgtgcact gtcagaagtc actggcttgt cccctgatgt gatacaatca
61 caatcttatt tctcatttta tggtgatgat gaaatagtct caacagacat agaatttgac
121 ccaatcaggt tgacacaaat actgaaggag tatggtttga gacccacaag acctgataaa
181 actgatggcc caattattgt cagacaacag gtggatggtc tggttttcct ccggcgtacc
241 atctctaagg acgccattgg ataccaggga cggctcgacc gcaactccat tgaaagacag
301 ctttggtgga ctcgcgggcc aaaccacgag gacccatttg agacgctagt cccacattcg
361 cagagaaaga tccaattaat atccctgctg ggtgaagcag cactccatgg tgaaaaattc
421 tacagaaaga tagctggtag ggttatccaa gaagtcaagg agggggggct tgaaatctac
481 attcctggtt ggcaggccat gttccgctgg atgcgattcc atgatctgag tttgtggaca
541 ggagaccgcg atctcctgcc cgattatgta aatgatgatg gcgtctaagg acgccccacc
601 aaacatggat ggcaccagtg gtgccggcca gctggtacca gaggcaaata cagctgagcc
661 tatatcaatg gagcctgtgg ctggggcagc aacagctgcc gcaaccgctg gccaagttaa
721 tatgattgac ccctggataa tgaataatta tgtgcaagcc cctcaaggtg aattcactat
781 atcgcctaac aatacaccag gtgatatttt gtttgatcta caattaggcc cccatctcaa
841 tcctttctta tcccatttgg cccaaatgta taatggttgg gttggcaata tgaaagtgaa
901 ggtcctattg gctggtaatg ccttcacggc tggtaaaata attattagtt gcataccccc
961 tggctttgct gcacaaaaca tctctattgc tcaggctaca atgttccccc acgtcatagc
1021 tgacgttagg gttttggaac ctattgaggt gccattggaa gatgtgagga atgtgctgtt
1081 ccacaacaat gacaacacac caaccatgag gttggtgtgc atgctctaca cccccttgcg
1141 agccagtggc agctcatctg gaactgaccc ttttgtgatt gctgggcgtg ttttgacatg
1201 cccaagccct gattttagct tcttgttctt ggtccccccc aatgtagaac aaaagactaa
1261 accttttagt gtcccaaatc ttccattgaa taccctttca aattcaagag tcccttctct
1321 aattaaatca atgatggtat ccagagacca tgggcagatg gttcagtttc aaaacggtag
1381 ggtcacccta gatgggcaac tgcaaggcac cacgcccaca tcagctagcc agctgtgcaa
1441 aatcagaggc agtgtcttcc atgctaatgg tgggaatgga tataacctaa ctgaactgga
1501 tgggagccca taccatgcat ttgagagccc tgcgccaata gggtttccag atctgggtga
1561 gtgtgattgg cacatggagg cctcccctac tacccaattc gatactggtg atgttataaa
1621 gcaaattaat gtcaaacaag aatcagcatt tgctccccac cttggtacta tacaagcagg
1681 cggcctgagt gatgtgagtg tcaacactaa catgatagct aaattaggat gggtgtcacc
1741 cgtcagtgat ggacatagag gaaatgtcga tccgtgggtc attccacgat acgggtcgac
1801 tttgactgag gccgcccaat tagcccctcc aatatatccc ccaggttttg gtgaggccat
1861 tgtgtttttc atgtcagatt ttcctattgc ccatggtacc aatggcttga gtgtgccttt
1921 caccataccc caagaatttg tcactcattt tgtcaatgaa caggccccca ctagagggga
1981 agcagcccta ctgtattatt tagatcctga cacccataga aatctaggtg agtttaaatt
2041 atatcctgag ggcttcatga cgtgtgtgcc taattccagt ggcactggtc cacaaaccct
2101 cccaatcaat ggtgtttttg tttttgtgtc ctgggtttcc agattctatc agttaaagcc
2161 tgtgggaaca gccggcccgg ctcgtaggct tgggattagg agatcataat ggcccaagct
2221 atacttggag ccatagcagc aacggcagct ggcagcgctg ttggtgctgg tatacaagct
2281 ggaaccgaag ctgccctgca acaccagagg ttccagcaag atttgaccct acaaaagaac
2341 tccttcattc atgacaaaga gatgatgggc ctacaggttg aggcttcaac tgtactcctc
2401 caaaacagtt tgggcacacg gtacaacatg ttgaccaaag cagggatgac atccgcagat
2461 gcggcacgca tggttgtggg ggcgcctaca acgcgcgtca ttgattggaa tgggactagg
2521 gtcgccgcgc ccatgtcaac cgcaacgaca cttaggtctg gtggtttcat gaccgtgcca
2581 actgtttata ggggtggtaa gaataaacaa tcaattggtg gtggtttttc taatgtaaat
2641 tatgatccat cagtttcttc ttctcggact tctcagtggg tttcttcaca aaattcaatg
2701 cgttccactt tggaaccatt tcatccaggt gccctgagaa ccacatgggt tactccacct
2761 gggtcaactt ctacttctac aatttccacg gtttctactg tgccaaaatt ctttaataca
2821 gaaagattac ccttattcgc gaacaggggt aagtgatttt gtaatatgaa ttagtgggca
2881 tcatattcaa tttggaatca attagatatt tagattggca gatgatg
//