Typing tool
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Typing tool
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Complete norovirus genomes
| AF190817 | GII.3 | |
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| GII.P29 |
ORF1: 1..872
ORF2: 853..2499
ORF3: 2499..3260
LOCUS AF190817 3312 bp RNA linear VRL 03-AUG-2001
DEFINITION Human calicivirus strain Arg320 RNA polymerase (pol) gene, partial
cds; capsid protein gene, complete cds; and unknown gene.
ACCESSION AF190817
VERSION AF190817.1
KEYWORDS .
SOURCE Human calicivirus strain Arg320
ORGANISM Human calicivirus strain Arg320
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3312)
AUTHORS Jiang,X., Espul,C., Zhong,W.M., Cuello,H. and Matson,D.O.
TITLE Characterization of a novel human calicivirus that may be a
naturally occurring recombinant
JOURNAL Arch. Virol. 144 (12), 2377-2387 (1999)
PUBMED 10664391
REFERENCE 2 (bases 1 to 3312)
AUTHORS Jiang,X., Espul,C., Zhong,W.M., Cuello,H. and Matson,D.O.
TITLE Direct Submission
JOURNAL Submitted (29-SEP-1999) Center for Pediatric Research, Eastern
Virginia Medical School, 855 West Brambleton Ave, Norfolk, VA
23510-1001, USA
FEATURES Location/Qualifiers
source 1..3312
/organism="Human calicivirus strain Arg320"
/mol_type="genomic RNA"
/strain="Arg320"
/host="Homo sapiens"
/db_xref="taxon:106586"
/note="causing acute gastroenteritis; potentially
naturally occurring recombinant virus in genogroup II of
Norwalk-like viruses"
gene <1..872
/gene="pol"
CDS <1..872
/gene="pol"
/note="nonstructural protein"
/codon_start=3
/product="RNA polymerase"
/protein_id="AAF13919.1"
/translation="NEDGPIIFEKHSRYHYHYDADYSRWDSTQQRAVLAAALEIMVKF
SSEPHLAQVVAEDLLSPSVMDVGDFKISITEGLPSGVPCTSQWNSIGHWLLTLCALSE
TTNLSPDIIPANSLFSFYGDDEIVSTDIKLDPGKLTAKLKEYGLKPTRPDKTEGPLII
SEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQ
LMSLLGEAALHGPSFYSKIIKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDR
NLAPSFVNEDGVE"
CDS 853..2499
/note="structural protein"
/codon_start=1
/product="capsid protein"
/protein_id="AAF13920.1"
/translation="MKMASNDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNPPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIESLHTGPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHVQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTDSSDFDQNQP
TRFTPVGIGVDNEADFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGVLDCLVPQEWAQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
CDS 2499..3260
/note="3' ORF"
/codon_start=1
/product="unknown"
/protein_id="AAF13921.1"
/translation="MAGAFIAGLAGDMLANTVGSLVSAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTLAASPLLMQPVAINAPMTKVLDWSGT
RYWAPNATSTTSMSGGFTNQAVHRTTPNFKTNQTPKSTPSSGSSARSNSTQLTSLSSH
SSGSSRSSGSTVISSLPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSST
VSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 tgaatgaaga tggccctatc atatttgaga aacattctag gtaccactat cactatgatg
61 cagactactc ccggtgggat tcaacacaac agagagctgt gctagccgca gccctagaga
121 tcatggtaaa attctcttca gaaccacatc tagcccaggt ggttgcagag gaccttcttt
181 ctcccagtgt gatggacgtg ggtgatttca agatatcaat cactgaaggg cttccttccg
241 gtgtgccttg cacttcacag tggaattcca tcggccattg gctcctcaca ctctgtgcac
301 tctctgagac tacaaatctg tcccctgaca tcatcccggc aaattctctc ttctcctttt
361 atggtgatga tgaaatcgtg agcacagata tcaaattaga cccagggaag cttacagcca
421 agttgaaaga gtatgggttg aaaccaactc gccctgacaa gactgaaggg cctctgatca
481 tctctgagga cctagacggt ctgaccttcc tacgaaggac cgtgacccgt gacccagctg
541 gctggtttgg aaagttggag caaagttcaa tacttagaca aatgtattgg accaggggcc
601 ctaaccatga ggacccctct gaaacaatga taccacactc ccagagaccc atacagctaa
661 tgtcactgtt aggtgaagca gcactgcatg gaccatcatt ctacagtaag attattaagc
721 tagttattgc agagctgaag gaaggtggca tggactttta cgtgcctaga caagaaccaa
781 tgttccggtg gatgaggttc tcagacttga gcacgtggga gggcgatcgc aatctggctc
841 ccagctttgt gaatgaagat ggcgtcgaat gacgccactc catctaatga tggtgccgcc
901 ggcctcgtcc cagagatcaa caatgaggca atggcgctag acccagtggc gggtgcagcg
961 atagcagcac ccctcactgg tcagcaaaac ataattgatc cctggattat gaataatttt
1021 gtgcaagcac ctggtggtga gtttacagtg tcccctagga atccccctgg tgaagtgctt
1081 cttaatttgg aattgggccc agaaataaac ccctatttgg cccatcttgc tagaatgtat
1141 aatggttatg caggtggatt tgaagtgcag gtagtcctgg ctgggaatgc gtttacagca
1201 ggaaagataa tctttgcagc tatacctcct aattttccaa ttgataatct gagcgcagca
1261 caaatcacaa tgtgcccgca tgtgattgtg gatgtcagac agttggaacc ggtcaacctc
1321 ccgatgcctg acgttcgcaa caacttcttt cattacaatc aagggtctga ttcgagattg
1381 cgcttaattg caatgctgta tacacctctt agggcaaata attctggaga tgatgttttt
1441 actgtgtcct gtagagtact gactaggcct agccctgact tctcattcaa tttccttgtc
1501 ccacctactg tggaatcaaa gacaaaaccc tttaccctcc ctattctgac tatctctgaa
1561 atgtccaatt ctaggtttcc agtgccgatt gagtctttgc acaccggccc aactgagaat
1621 attgttgtcc agtgccaaaa tgggcgcgtc actcttgatg gtgagttgat gggcaccacc
1681 caactcttac cgagtcaaat ttgtgctttt aggggcgtgc tcaccagatc aacaagtagg
1741 gccagtgatc aggccgatac agcaacccct aggctgttta attattattg gcatgtacaa
1801 ttggataatc taaatgggac accttatgac cctgcagaag acataccagg ccccctaggg
1861 acaccagact tccggggcaa ggtctttggc gtggccagcc agagaaaccc tgacagcaca
1921 actagagcac atgaagcaaa ggtggacaca acagctggtc gtttcacccc aaaattgggc
1981 tcattagaga tatctactga ctccagtgac tttgaccaaa accaaccaac aagattcacc
2041 ccagttggca ttggggttga caatgaggca gattttcaac aatggtcttt acccgactat
2101 tctggtcaat tcactcacaa catgaacttg gccccagctg ttgctcccaa cttccctggt
2161 gagcagctcc ttttcttccg atcacagtta ccatcttctg gtgggcgatc caacggggtt
2221 ctagactgtc tggtccccca ggaatgggct caacacttct accaggaatc ggccccggcc
2281 caaacacaag tggccctggt taggtatgtc aaccctgaca ctggtagagt gctatttgag
2341 gccaagctgc ataaattagg tttcatgact atagctaaga atggtgactc tccaataact
2401 gtccccccaa atggatactt taggtttgaa tcttgggtga acccctttta tacacttgcc
2461 cccatgggaa ctgggaatgg gcgtagaagg attcaataat ggctggagct tttatagcag
2521 gattggctgg tgacatgctc gcaaatactg taggatctct agttagtgca ggggccaatg
2581 ctattaatca aaaagttgat tttgaaaata ataaatattt acaaaatgca tccttcaatc
2641 atgataagga aatgttaaat gcacaaattg aggcaacaaa gaggttacag gctgacatga
2701 ttgctatcaa acaaggggtt ttgacgctgg cggcttctcc cctactgatg cagcccgtgg
2761 caattaatgc ccccatgaca aaagttttag attggagtgg aacaaggtac tgggcaccaa
2821 atgccacctc cacaacctca atgtcgggtg gcttcacaaa ccaagctgtt cacagaacca
2881 cgccaaattt taaaacgaac cagaccccca aatccacacc cagcagtggg tcttcagcga
2941 ggtcaaactc aacccaactc actagcctga gctcacactc gtccgggtcg tctcgatcca
3001 gcgggtctac agttattagc tcattaccat cttctaacag gactagggac tgggtcaacc
3061 aacagaattt taatttggaa ccacacatgc ctggatctct taggacagct tttgttactc
3121 caccatctag tacggcctct agttcaagca cggtctcaac cgtgcccaaa aatgttttgg
3181 actcctggac atctgcgttt aacacgcgca gacagccgct attcgcacac cttcgtagaa
3241 ggggggagtc aaatgtttag tgaaaagatc attttaaatt tgatttaaat tggatttaat
3301 ttggaatctt tt
//