Typing tool
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Typing tool
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Complete norovirus genomes
| AF145896 | GII.4 Sydney | |
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| GII.P4 US95 |
ORF1: 5..5104
ORF2: 5085..6704
ORF3: 6704..7510
LOCUS AF145896 7555 bp RNA linear VRL 19-NOV-1999
DEFINITION Camberwell virus polyprotein and capsid genes, complete cds; and
unknown gene.
ACCESSION AF145896
VERSION AF145896.1
KEYWORDS .
SOURCE Camberwell virus
ORGANISM Camberwell virus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7555)
AUTHORS Seah,E.L., Marshall,J.A. and Wright,P.J.
TITLE Open reading frame 1 of the Norwalk-like virus Camberwell:
completion of sequence and expression in mammalian cells
JOURNAL J. Virol. 73 (12), 10531-10535 (1999)
PUBMED 10559373
REFERENCE 2 (bases 1 to 7555)
AUTHORS Seah,E.L., Marshall,J.A. and Wright,P.J.
TITLE Direct Submission
JOURNAL Submitted (26-APR-1999) Microbiology, Monash University, Wellington
Road, Clayton, Victoria 3168, Australia
FEATURES Location/Qualifiers
source 1..7555
/organism="Camberwell virus"
/mol_type="genomic RNA"
/strain="Hu/NLV/Camberwell/101922/94/AUS"
/db_xref="taxon:94433"
/note="Human Calicivirus"
CDS 5..5104
/note="non-structural proteins; ORF1"
/codon_start=1
/product="polyprotein"
/protein_id="AAD33960.1"
/translation="MKMASNDASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARP
KQPLPREIPQRPPRPPTPELVKKIPPPPPNGEDELVVSYSVKGGVSGLPELSTVRQPD
ETSTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELTPLSLFWRPVYTPQYLISPDTLKKLHGESFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNKKPLPTVDDSKLKKVANIFLCALSSLFTRPIKDIIGK
LRPLNILNILASCDWTFAGVVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL
AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPEVEK
AKRDFPGQPDMWKNAFSPDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEYELQGPTLTTFNFDRNKVIAFRQLAAENKYGLMDTMKVGRQLKDVRTM
PELKQALKNILIKRCQIVYSGCTYTLESDGKGNVKVDRVQSATVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSRPQVEDTEETINKDGC
PKPKDDEEFVVSSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERTSLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAQEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRENDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
PGSAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPQKWSFTQACASLDKTTSSGHPHHIRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMDELKAHCVALPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFKISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5085..6704
/note="58 kDa; ORF2"
/codon_start=1
/product="capsid"
/protein_id="AAD33961.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNIIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLSRMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSHDSTLKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMSNSRFPIPLEKLYTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSAVNICNFRGDVTHIVGSHDYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGLL
TQTTRADGSTRAHKATVSTGSVHFTPKLGSVQFTTDTNNDFQTGQNTKFTPVGVIQDG
DHHQNEPQQWVLPNYSGRTGHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDC
LLPQEWVLHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYITVAHTGPFDLVI
PPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6704..7510
/note="encodes a small basic protein of unknown function;
ORF3"
/codon_start=1
/product="unknown"
/protein_id="AAD33962.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATQKLQQGLMKVKQAMLLEGGFSTTDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTSQPSGALPGRTTPRVTVPARGPPSTLS
NASTATSVYSNQTVSTRLGSSAGSGTGVSSFPSTVRTRNWVEDQNRNLSPFMRGALNT
SFVTPPSSRSSNQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gttgccaaca gcaacaacga
61 caccgcaaaa tcttcaagtg acggagtgct ttccagcatg gctgtcactt ttaaacgagc
121 cctcggggcg cggcctaaac agcctctccc gagggaaata ccgcaaagac ccccacggcc
181 acctactcca gaactggtca aaaagatccc ccctccccca cccaacgggg aggatgaact
241 agtggtttct tatagtgtca aaggtggcgt ttccggtctg cctgagcttt ccactgtcag
301 gcaaccggat gaaactagca cggccttcag tgttccccca ctcaatcaga gggagaatag
361 ggatgccaag gagccactaa ctggaacaat tctggaaatg tgggacggag agatctacca
421 ttacggcctg tatgtggagc gaggtcttgt gctcggcgtg cacaaaccac cagctgccat
481 tagtctcgcc aaggtcgaac tgacaccact ctccttgttc tggagacctg tatacactcc
541 ccagtatctc atttccccag acactctcaa gaaattgcac ggagaatcgt tcccctatac
601 agcctttgac aacaattgct atgccttctg ttgttgggtc ttagacctaa acgactcgtg
661 gctgagtagg agaatgatcc agaggacaac tggtttcttc agaccctatc aagattggaa
721 taagaaaccc ctccctactg tggatgactc caaattaaag aaggtagcta acatattcct
781 gtgtgcccta tcttcactat tcaccaggcc catcaaagac ataataggga agctaagacc
841 tcttaacatc ctcaacatct tggcctcatg tgattggacc ttcgcaggcg tagtggaatc
901 cttgatactc ttggctgagc tctttggagt cttttggaca cccccagatg tgtctgcgat
961 gattgccccc ttgctaggtg attacgagtt acaaggacct gaggaccttg cagtggaact
1021 cgttcctata gtgatggggg ggattggctt ggtgttagga tttaccaaag agaagattgg
1081 gaagatgttg tcatctgctg catccacctt aagagcttgt aaagatcttg gtgcatacgg
1141 actggaaatc ctaaagttag tcatgaagtg gttcttccca aagaaagagg aagcaaatga
1201 gctggctatg gtgagatcca tcgaggatgc ggtgctggac ctcgaggcga ttgaaaacaa
1261 ccatatgacc accctgctca aggacaaaga cagcctggca acctatatga gaacccttga
1321 cctggaggag gagaaagcca ggaaactctc aaccaagtct gcttcacctg atatcgtggg
1381 tacaatcaac gcccttctgg cgagaatcgc tgctgcacgt tccctggtgc atcgagcgaa
1441 ggaggagctt tccagcagac caagacctgt tgtcgtgatg atatcaggca gaccagggat
1501 agggaaaacc caccttgcca gggaactggc caagagaatc gcagcgtccc tcacaggaga
1561 ccagcgtgta ggcctcatcc cacgcaatgg cgtcgaccac tgggacgcgt acaaggggga
1621 gagggtcgtc ctatgggacg actatggaat gagtaatccc atccatgatg ccctcaggtt
1681 acaagaactc gctgacacct gccccctcac tctaaactgt gacaggattg agaacaaagg
1741 aaaggtcttt gacagtgatg ccataattat caccactaat ctggccaacc cagcaccact
1801 ggactatgtc aactttgagg catgctcgag gcgcatcgat ttcctcgtgt atgcagatgc
1861 ccctgaagtc gagaaggcga agcgtgattt tccaggtcaa cctgacatgt ggaagaacgc
1921 tttcagtcct gatttttcgc acataaaact aacactggct ccacagggtg gcttcgataa
1981 gaatgggaac accccacatg ggaagggcgt catgaagact ctcaccactg gttcccttat
2041 tgcccgggca tcagggctac tccatgagag gttagatgag tatgagctac agggcccaac
2101 actcaccacc tttaactttg atcgcaacaa ggtgattgct ttcaggcagc ttgctgctga
2161 aaacaaatac gggttgatgg acacaatgaa agttggaaga cagctcaagg atgtcagaac
2221 catgccagag ctcaagcaag cactcaagaa tatcttaatc aagaggtgcc agatagtgta
2281 cagtggttgc acctatacac ttgagtctga tggcaagggc aatgtgaaag ttgacagagt
2341 tcagagcgcc accgtgcaga ccaataacga gttggccgga gccctacacc atctaaggtg
2401 cgccagaatt aggtactatg tcaagtgtgt ccaggaggcc ctatattcca ttatccaaat
2461 tgctggagct gcatttgtca ccacgcgcat cgtcaagcgc atgaacatac aagacctctg
2521 gtccaggcca caagtggaag acacagagga gactatcaac aaggacgggt gcccaaaacc
2581 caaagatgat gaggagttcg tcgtctcatc cgacgacatc aaaaccgagg gcaagaaagg
2641 gaagaacaag actggccgtg gcaagaagca cacagccttc tcaagcaaag gcctcagtga
2701 tgaagagtac gacgagtaca agaggatcag agaagaaaga aacggcaagt actccataga
2761 agaatacctc caggacaggg acaagtacta tgaggaggtg gccattgcca gggcaaccga
2821 ggaggacttc tgtgaggagg aggaggccaa gatccggcag aggattttca ggccaacaag
2881 gaaacaacgc aaggaggaaa ggacctctct cggtttggtc acaggctctg aaatcaggaa
2941 gaggaaccca gatgacttca agcccaaggg aaaactgtgg gctgatgatg acaggagtgt
3001 ggactacaat gagaaactca gttttgaggc cccaccaagt atctggtcga ggatagtcaa
3061 ctttggttca ggttggggct tttgggtctc ccccagccta ttcataacat caacccacgt
3121 tataccccag ggcgcacagg agttctttgg agtccccatc aagcaaattc agatacacaa
3181 atcgggcgag ttctgtcgct tgaggttccc aaaaccaatc aggactgatg tgacgggcat
3241 gatcttagaa gaaggtgcgc ccgaaggtac cgtggccaca ctactcatca agaggcctac
3301 tggagagctt atgcccttag cagccagaat ggggacccat gcaaccatga aaattcaagg
3361 gcgcactgtt ggaggtcaga tgggcatgct tctgacggga tccaacgcca aaagcatgga
3421 tctaggtacc actccaggtg actgcggctg cccctacatc tacaagaggg aaaatgacta
3481 cgtggttatt ggagtccaca cggctgccgc tcgtggggga aacactgtca tatgtgccac
3541 tcaggggagt gagggagaag ctacacttga aggcggtgac aataagggaa cctactgtgg
3601 cgcaccaatc ctaggtccag gaagtgcccc aaagctcagc accaagacta aattctggag
3661 atcatccaca acaccactcc cacctggcac ctatgaacca gcttatcttg gtggtaagga
3721 ccccagagtc aagggtggcc cttcattgca acaagttatg agggatcagc tgaaaccatt
3781 tacagagccc aggggcaaac caccaaagcc aagtgtcttg gaggccgcca agaaaaccat
3841 catcaatgtc cttgaacaaa caattgatcc gcctcagaag tggtcattca cgcaagcttg
3901 cgcatccctc gacaagacta cttccagtgg ccatccgcac cacatacgga aaaacgactg
3961 ctggaacggg gaatccttca caggcaagtt ggcagaccag gcttccaaag ccaacctgat
4021 gttcgaagag gggaagaaca tgaccccagt ttacacaggt gcgcttaagg atgagttggt
4081 caaaactgac aaaatttatg gtaagatcaa gaagaggctt ctctggggct cggacttagc
4141 gaccatgatc cggtgcgctc gagcattcgg aggcctaatg gatgaactca aagcacactg
4201 tgttgcactt cctgtcagag ttggtatgaa catgaatgag gatggcccca tcatcttcga
4261 gaggcattcc aggtacaaat atcactatga tgctgattac tctcgatggg attcgacaca
4321 acagagagcc gtgttagcag cagccctaga aatcatggtt aaattctccc cagaaccaca
4381 cctggcccag atagttgcag aagaccttct ttctcctagt gtgatggatg tgggtgactt
4441 caaaatatca atcaatgagg gtctcccctc tggggtgccc tgtacctccc agtggaactc
4501 catcgcccac tggctcctca ctctctgtgc actctctgaa gttacaaatt tgtcccctga
4561 catcatacag gctaattccc tcttctcctt ctatggcgat gatgagattg tcagtacaga
4621 tataaagttg gacccagaga aattgacagc aaaactcaag gaatacgggc taaaaccaac
4681 ccgccctgac aaaactgaag gaccccttat tatttctgaa gacttgaatg gcctgacctt
4741 cctgcggaga actgtgaccc gcgacccagc tggctggttt ggaaaattgg aacagagctc
4801 aatacttagg caaatgtact ggactagggg ccccaaccat gaggacccat ctgaaacaat
4861 gattccacac tcccaaagac ccatacaatt aatgtcccta ctgggagagg ccgcactcca
4921 cggcccagca ttctacagca aaattagcaa gctagtcatt gcagagttga aggaaggtgg
4981 catggacttt tacgtgccca gacaagagcc aatgttcaga tggatgagat tctcagatct
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 gtgacgccaa cccatctgat gggtccgcag ccaacctcgt cccagaggtc aacaatgagg
5161 ttatggctct ggagcccgtt gttggtgccg ctattgcggc acctgtagcg ggccaacaaa
5221 atataattga cccctggatt agaaataatt ttgtacaagc ccctggtgga gagtttacag
5281 tgtcccctag aaacgctcca ggtgagatac tatggagcgc gcccttgggc cctgatttga
5341 atccctatct ttctcacttg tccagaatgt ataatggtta tgcaggtggt tttgaagtgc
5401 aagtgatcct tgcggggaac gcgttcaccg ccgggaaagt tatatttgca gcagttccac
5461 caaactttcc aactgaaggc ttaagcccca gccaggttac tatgttcccc catataattg
5521 tagatgttag acaactggaa cctgtgttga ttcccctacc tgatgtcagg aataatttct
5581 atcattacaa tcaatcacat gattctaccc ttaaattgat agcaatgctg tacacaccac
5641 ttagggctaa taatgccggg gatgatgtct ttacagtctc ttgtcgagtt ctcacgagac
5701 catcccccga ttttgatttt atattcttgg tgccacccac agttgaatca agaactaaac
5761 cattcaccgt cccaatttta accgttgagg aaatgtccaa ttcaagattc cccattcctt
5821 tggaaaagct gtatacgggt cccagcagtg cttttgttgt acaaccacaa aatggcagat
5881 gcacgactga cggcgtgctc ttaggcacta cccagctgtc agctgtcaac atctgcaact
5941 ttagggggga tgtcacccat attgtgggca gccatgatta tacaatgaac ttggcttccc
6001 aaaattggag caattatgac ccaacagaag aaatcccagc ccccctggga acaccagatt
6061 ttgtggggaa gatccaaggt ctgctcaccc aaaccacaag agcagatggc tcgacccgtg
6121 cccacaaagc tacagtgagc actgggagtg tccacttcac tccaaagctg ggtagtgttc
6181 aattcaccac tgacacaaac aatgatttcc aaactggcca aaacacgaaa ttcaccccag
6241 ttggtgtcat ccaagacggt gaccaccacc agaatgagcc ccaacaatgg gtactcccga
6301 attattcagg tagaactggt cataatgtgc acctggcccc tgccgttgcc cccacttttc
6361 cgggtgagca actccttttc tttagatcca ctatgcccgg gtgtagcggg tatcccaaca
6421 tgaacttgga ctgcctactc ccccaggaat gggtgctgca cttctaccag gaagcagctc
6481 cagcacaatc tgatgtggct ctgctgagat ttgtgaatcc agacacaggt agggttctgt
6541 ttgagtgcaa gctccataag tcaggctaca tcacagtggc ccacaccggc ccgtttgact
6601 tggttatccc ccctaatggt tattttagat ttgattcttg ggtcaaccag ttctacacac
6661 ttgcccccat gggaaatggg acggggcgca ggcgtgcatt ataatggctg gagctttctt
6721 tgctggattg gcatctgatg tccttggctc tggacttggt tctctaatca atgctggggc
6781 tggggccatc aaccaaaaag ttgaatttga aaataacaga aaattgcaac aagcttcctt
6841 ccaatttagt agcaatctgc aacaggcttc cttccaacat gataaagaga tgctccaagc
6901 acaaattgag gctacccaaa aattgcaaca gggtctgatg aaggttaaac aggcaatgct
6961 cctagagggt ggattctcca caacagatgc agcccgtggg gcaatcaacg cccccatgac
7021 aaaggctctg gactggagcg gaacaaggta ctgggcccct gatgccagga ccacaacata
7081 caatgcaggc cgcttttcca cctctcagcc ttcgggggca ttgccaggaa gaactactcc
7141 tagggttacc gtccccgctc ggggtccccc tagcacactt tccaatgctt ctactgctac
7201 ttctgtatat tcaaatcaaa ctgtttcaac gagactaggt tcttcagctg gttctggcac
7261 cggtgtctcg agtttcccgt caactgtaag gactaggaac tgggttgagg accaaaacag
7321 aaatctgtca cctttcatga ggggggctct caatacatca ttcgtcaccc caccatctag
7381 tagatcctcc aaccaaggca cagtctcaac cgtgcctaaa gaaattttgg actcctggac
7441 tggcgctttc aacacgcgca ggcagcctct ctttgctcac attcgtaaac gaggggagtc
7501 acgggtgtaa tgtgaaaaga caaaattgat tatctttcct ttctttagtg tcttt
//