Typing tool
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Typing tool
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Complete norovirus genomes
| AF093797 | GI.6 | |
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| GI.P6 |
ORF1: 5..5359
ORF2: 5343..6965
ORF3: 6965..7594
LOCUS AF093797 7598 bp RNA linear VRL 29-SEP-2000
DEFINITION Norwalk virus, complete genome.
ACCESSION AF093797
VERSION AF093797.1
KEYWORDS .
SOURCE Norwalk virus
ORGANISM Norwalk virus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus.
REFERENCE 1 (bases 1 to 7598)
AUTHORS Schreier,E., Doring,F. and Kunkel,U.
TITLE Molecular epidemiology of outbreaks of gastroenteritis associated
with small round structured viruses in Germany in 1997/98
JOURNAL Arch. Virol. 145 (3), 443-453 (2000)
PUBMED 10795514
REFERENCE 2 (bases 1 to 7598)
AUTHORS Schreier,E., Doering,F. and Kuenkel,U.
TITLE Direct Submission
JOURNAL Submitted (24-SEP-1998) Molecular Virology, Robert Koch Institute,
Nordufer 20, Berlin 13353, Germany
FEATURES Location/Qualifiers
source 1..7598
/organism="Norwalk virus"
/mol_type="genomic RNA"
/strain="Norwalk-like"
/isolate="BS5"
/db_xref="taxon:11983"
/country="Germany"
CDS 5..5359
/note="ORF1"
/codon_start=1
/product="polyprotein"
/protein_id="AAC64602.1"
/translation="MMMASKDVVATNASSTGDNSNTMKDRFLARLKSLGNTKPIKIEN
TQMALGLLSREPSPSPNRDPPKQQRDRAPRSVAETQQAMGWTDPPVDQNLPTWEELSQ
SEKQKIMAENSKWFDAGGLGPATLPSNYCRVQDNGDGDQQVKWSAKDGVNLGVDALTT
VQGPPWNLCPLPPVDQRNSGAAKEPLIGDMIEFYEGHIYHYAMYIGQGKTIGVHSPRA
AFSIPRITIHPIAAWWRVCYVPTQEQRLSYDQLKELENEPWPYAAVTNNCYEFCCRIM
DLQDTWLERRLVTSGRFNHPTQDWSKDTPDFQQDSKLEVVRDAVLAAINGLVSRPFKN
LLNKLKPLNILNLLSNCDWTFMGIVETIILLMELFGVFWDPPDVSNFIASLLPDMHLQ
GPEDLAKDLIPLILGGIGLAIGFTKDKVTKVMKSAVDGLRAATQLGQYGLEVFAVIKK
YFFGGDQTEKTLKDIEAAVIDMEVISTTAITQLVRDKQSARTYMAILDAEEEKARKLS
VKHADPHVVSTTNALISRISMARSALAKAQAELTNRVKPVVIMMCGPPGIGKTKAAEY
LAKRLANEIRPGGKVGLVPREAVDHWDGYHGEEVMLWDDYGMSKIADDCNKLQAIADT
APLTLNCDRIEKKGMQFVSDAIVITTNAPGPAPVDFVNLGPVCRRVDFLVYCSAPEVE
QVRRVSPGDTGALKDCFKDDFSHLKMEIAPQGGFDNQGNTPFGKGTMRPTTINRLLIQ
AVALTMERQDEFQMQGPTYDFDSDRISAFTSLAKANGLSLIGMASLGKRLRSVNSIHG
LKNALTGYTITPCTIKWQARFYDIESDGNVVKICENTSAQTQRQQSIDTAVLALTRLR
AARAAAYASCLQCAITTVLQMAGSALVIHRAVKRMFGTHTNAVSLEGPDREHRCRVHQ
AKANGRGPIGHDDVIEKYGLCETEDEGTQEQEATIELPTASHEGKNKGKTKKGRGRKA
NYNAFSRRGLNDEEYEESRRLEKEKGGNYSIQEYLEDRQRYEEEMAEVQAGGDGGIGE
TEMEIRHRVFFKSKTKRNRQEERRQLGLVTGSEIRKRKPIDWTPPKNEWADDDREVDY
TEKINFEAPPTMWSRVTRFGSGWGFWVSPTVFITTTHVIPIGAKEFFGEPLDSIAIHR
AGEFTQFRFSRKIRPDLTGMVLEEGCPEGVVCSILIKRDSGELLPLAVRMGAVASMKI
QGRLVHGQSGMLLTGANAKGMDLGTLPGDCGAPYVYKRNNDWVVCGVHAAATKSGNTV
VCAVQAGEGETTLEGGDKGHYAGHEIVRNSKGPALSSKTKFWRSTPEPLPPGVYEPAY
LGGKDPRVKGGPSLYQVLRDQLKPFAEPRGRMPEPGLLEAAVETVTSMLEQVMDTPTP
WSYADACQSLDKTTSSGYPYHKRKNDDWNGTTFVGELGEQAAHANNMYELGKSMKPLY
TAALKDELVKPEKIYQKIKKRLLWGADLSTVIRSARAFGPFCDAIKSHVIKLPIKVGM
NSIEDGPLIYAEHAKYKNHFDADYSAWDSTQNRQIMMESFSIMCRLTASPDLAAVVAR
DLLAPSEMDVGDFVIRVKEGLPSGFPCTSQVNSINHWLITLCALSEVTGLAPDVIQSQ
SYFSFYGDDEIVSTDIDFDPARLTQVLREYGLRPTRPDKSEGPIILRKNVDGLVFLRR
TISKDAAGYQGRLDRNSIERQLWWTRGPNHDDPNETLIPHPQRKIQLISLLGEASLHG
EKFYRKISGRVIQEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRDLLPEFVNDDGV
"
CDS 5343..6965
/note="ORF2"
/codon_start=1
/product="capsid protein"
/protein_id="AAC64603.1"
/translation="MMMASKDAPPSPDGASGAGQLVPEVNTADQISMDPVAGASTAVA
TAGQVNMIDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSQMYNG
WVGNMRVRILLAGNAFTAGKVIICCVPPGFDARILTIAQATLFPHLIADVRTLEPVEL
PLEDVRNVLYHNSSQPQPTMRLVAMLYTPLRTGGGSGGTDAFVVAGRVLTCPAPDFSF
LFLVPPSVEQKTRVFSVPNIPLKDLSNSRVPTLIQGMFVSPDVNQSVQFQNGRCQIDG
QLQGTTPVSLSQLCKIRGRTSSNTRVLNLSEVDGTPFVPLESPAPVGFPDIGGCDWHV
GFTFEARDQDPSQNVTFATNDSSFVPYLGSISPHNGDGFHSGDIIGSLDWISAPSDGS
ALDVWSIPKYGSSLPDVTHLAPAVFPPGFGEVILYFHSKFPGSGPTDKLRVPCLIPQE
FITHFCNEQAPIAGEAALLHYVDPDTGRNLGEFKLYPDGFMTCVPNSISSGPQTLPIN
GVFVFVSWVSRFYQLKPVGTASAARRLGLRRI"
CDS 6965..7594
/note="ORF3"
/codon_start=1
/product="unknown"
/protein_id="AAC64604.1"
/translation="MAQAIIGAIAASAAGSILGAGIQAGAEAGLQAQRYQQDLQLQQN
TFQHDREMIGYQVQASNALLAKNLNTRYTLLQAGGLSSADAARAVAGAPVTRIVDWNG
TRVAAPTSSATTLKSGGFMPVPIPLTQKSKQPLMTGQDNPNYAASSISRTASWVQSQN
SLRSMPPFHNDALRTVWVTPPGSSSTSSMQSSFYGVFNTDRLPLFANRR"
ORIGIN
1 gtgaatgatg atggcgtcga aagacgtcgt tgcaactaac gcttcaagca ctggtgacaa
61 tagtaacaca atgaaggatc gctttttagc gagactcaaa agtttgggta acaccaagcc
121 cataaaaatt gaaaacacac aaatggctct cgggcttcta agccgggagc catcaccatc
181 gcccaaccgt gaccctccta aacaacaacg ggacagggca ccacggagtg tggctgaaac
241 ccaacaggca atgggatgga cagacccacc cgttgatcaa aacctgccaa catgggagga
301 gttgagccag tctgagaagc agaaaatcat ggctgagaat tcaaagtggt ttgatgctgg
361 tggtctaggt cctgccacct tgccatcgaa ttattgtcgt gttcaagaca acggtgatgg
421 tgaccagcag gttaaatgga gtgctaaaga tggtgtcaat ctgggggttg atgccctaac
481 aactgtccaa ggccccccat ggaatttatg cccacttccc ccagtcgatc aacgcaatag
541 tggggcagcc aaggaacccc tgattggaga tatgattgag ttctatgaag ggcacatata
601 ccattatgcc atgtacatag gtcaggggaa aacaattggt gtgcattccc ctagggccgc
661 tttctccata cctaggatta ccatacaccc aatcgctgcc tggtggaggg tatgctatgt
721 ccccacccag gaacaaaggc tgagttatga ccaacttaaa gagcttgaaa atgaaccttg
781 gccatatgca gctgttacta acaactgcta tgagttttgc tgcaggataa tggatctaca
841 ggatacgtgg ttggagagga gattggtaac atcaggtcgc ttcaaccacc caactcagga
901 ctggtccaag gacactccag acttccagca agatagtaag ttggaggttg tccgtgatgc
961 cgtcttagca gcaattaatg gcctggtctc acgcccgttc aagaacttgc taaataagct
1021 taaaccacta aatatcctca acctactgtc caactgtgac tggaccttta tgggcatagt
1081 tgaaaccata atactgttga tggaactctt tggggtcttt tgggaccccc ctgacgtgtc
1141 caacttcata gcttctctcc tccctgacat gcaccttcaa ggcccggaag acttggccaa
1201 agatctgata ccactcatac tgggtgggat tgggttggcc ataggtttca ctaaggataa
1261 agtgacaaag gtgatgaaaa gtgcagttga tggtttgcgt gcagctaccc aactggggca
1321 atatggcctg gaagtcttcg cagtcatcaa gaagtatttc tttggaggtg atcagactga
1381 gaagacactt aaagacattg aggcagcagt cattgatatg gaggttatct ccacgacagc
1441 cataacgcaa ctagttagag acaagcaatc tgccaggact tatatggcca tactagatgc
1501 tgaagaggaa aaggctagaa aactatctgt gaaacacgct gacccccacg tggtgtcaac
1561 caccaacgca ttgatttcac gcatttcaat ggcacggtct gccctggcta aggcacaagc
1621 tgagttgaca aacagggtta agccagtggt gataatgatg tgtggccctc ctggtatagg
1681 caagacgaag gctgccgagt acctagccaa acggcttgcc aatgaaatac gcccaggtgg
1741 gaaagttggt ctagttccac gtgaagctgt cgaccactgg gacggttatc atggtgagga
1801 ggttatgttg tgggatgact atggaatgtc aaagatagca gatgactgta acaaactgca
1861 agcaatcgct gatacagccc ctttaacact caactgtgac cgaatagaga agaaaggtat
1921 gcagttcgtg tcagatgcta ttgttataac caccaacgcc cccgggccag cccctgttga
1981 ctttgtcaac ttaggacctg tctgtcggcg tgttgacttc ctagtctatt gctccgcccc
2041 agaagtcgaa caggtacggc gtgtcagccc tggagatact ggcgcgctca aagattgctt
2101 caaagatgat ttctctcacc ttaagatgga aattgcacca cagggtggat ttgacaacca
2161 agggaacaca ccatttggca agggcaccat gcgtcccacc accataaaca ggcttttaat
2221 ccaggcagtc gccctcacca tggaacgcca ggatgaattt caaatgcaag gaccaaccta
2281 tgattttgac tcagacagga tttcagcttt cactagccta gccaaagcta atggcttaag
2341 cttgattggt atggcaagcc tcggaaagag gctacgtagt gtcaactcaa tccatggcct
2401 caaaaatgcc ctgactggtt acaccatcac accctgcacc ataaaatggc aagctaggtt
2461 ttatgacata gagtctgatg gcaatgtggt caagatatgt gagaacacaa gtgcacaaac
2521 ccaacgccaa cagtccattg acaccgctgt cctcgcgctc acccggctca gggctgccag
2581 ggctgccgca tatgcatctt gtctgcaatg tgccatcacg actgtgttgc agatggcggg
2641 ttcagctctt gtcatacacc gagccgtcaa gcgtatgttc ggcacccaca ctaatgccgt
2701 ctccttagag ggtcctgaca gggaacaccg ctgtcgagtg catcaggcta aggctaatgg
2761 tcgtggcccc attggacatg atgatgttat agaaaagtat gggctgtgtg aaacagaaga
2821 tgagggcacc caagagcaag aagccaccat tgaattgccc actgcaagcc atgaaggcaa
2881 gaacaaaggg aaaaccaaaa agggccgagg ccgaaaagcc aattacaatg ccttctctag
2941 acgtggtctc aatgatgagg agtacgagga gtccagaaga ttagagaagg aaaaaggtgg
3001 aaattacagc atccaagaat accttgaaga caggcagcgc tatgaggagg agatggctga
3061 agtgcaggcc ggcggcgatg gtggaatagg tgagacagag atggagatac gccatcgagt
3121 cttctttaag tccaagacaa agagaaaccg tcaggaagaa cgtcggcagc ttggcttggt
3181 tacaggcagt gagataagga agagaaaacc tatagattgg acccccccca aaaatgaatg
3241 ggcagatgac gacagagagg tggactacac tgaaaaaata aactttgaag cccctcccac
3301 catgtggagc cgagtcaccc gattcggctc cggatggggg ttctgggtca gccctacagt
3361 gttcattact actacccatg ttataccaat tggggccaaa gaattctttg gggaaccatt
3421 ggattccatt gccatacacc gtgcaggaga gttcacacag ttccgtttct caaggaagat
3481 acggccagat ctaacaggga tggttcttga ggaagggtgt cctgaagggg tggtttgctc
3541 gatcttgatc aagcgtgatt caggtgagct gctaccattg gctgtgcgta tgggggctgt
3601 ggcttcaatg aagatacagg gtcggttggt ccatggtcag tcgggtatgc tcctgactgg
3661 tgccaatgca aaaggaatgg atctcggcac tctcccaggt gattgtggtg caccctatgt
3721 ctacaagaga aacaatgatt gggttgtttg cggtgtccac gcagcagcca ccaagtcagg
3781 caacactgtg gtctgtgcag tgcaggcagg tgagggggag accactctag aaggaggtga
3841 caagggtcat tatgctgggc acgaaatagt caggaacagt aagggccctg cactctcatc
3901 taaaactaaa ttctggagat caacaccaga acccctaccc ccaggtgtct atgaaccagc
3961 ttacctagga ggaaaagacc ctagagtcaa gggtggccct tctttatatc aagtccttcg
4021 ggaccaactg aaaccttttg ctgagccacg tgggcgcatg ccagagccag gtttactgga
4081 ggctgctgtt gagacagtga cttctatgct ggaacaggtt atggacacgc ccacgccctg
4141 gtcatatgct gatgcttgcc agtcattaga caagaccact agttctggat acccctacca
4201 taagagaaag aatgatgatt ggaatggcac cacctttgtg ggagaacttg gtgagcaagc
4261 agcccacgca aacaacatgt atgagctagg taagtccatg aagcccctat atacagcagc
4321 cctcaaagat gaacttgtca aaccagagaa gatctatcaa aaaattaaga aaaggttact
4381 ctggggggct gacctgtcaa ccgtcatacg atctgcacgg gcttttggcc ccttctgtga
4441 cgccataaag tcccatgtaa tcaagttgcc tattaaagtt ggtatgaatt caattgagga
4501 tggcccccta atctatgctg aacatgcaaa atataagaat cactttgatg cggattactc
4561 agcttgggac tcaacacaaa ataggcaaat tatgatggag tctttctcaa tcatgtgccg
4621 cctcaccgcc tcaccagatt tggcggctgt tgtggctaga gacctactag ccccttccga
4681 aatggatgtg ggagattttg taataagggt taaggagggt ctcccatcag gcttcccctg
4741 tacttcacaa gtcaatagca taaatcattg gctcattaca ttgtgtgcct tgtctgaggt
4801 cacgggcttg gcacccgatg ttatacaatc acagtcatat ttctccttct atggggacga
4861 tgagatcgtg tccacagaca ttgattttga cccggctcga ctcacccagg tccttaggga
4921 gtatggactg cgtccaactc gcccagataa aagtgagggc cccataatct tgaggaaaaa
4981 tgttgatggc ttggtattcc ttaggcgcac tatctccaag gatgcagctg gttaccaggg
5041 ccgattggat agaaactcca tagaaagaca gctatggtgg actcgtggcc ccaatcatga
5101 tgacccaaat gagacgctca ttccccaccc ccaaagaaag atccaactta tatcactgct
5161 gggagaggca tcacttcatg gggaaaagtt ttacaggaaa atttcaggta gagtcatcca
5221 agagatcaag acaggtggac tggaaatgta tgtgccaggc tggcaggcca tgttccgctg
5281 gatgcgtttt catgaccttg gactttggac aggagatcgc gatctcctgc ccgaattcgt
5341 aaatgatgat ggcgtctaag gacgccccac catcgcctga tggcgccagt ggcgctggcc
5401 agctagtgcc ggaggttaat acagctgacc aaatttcaat ggatcctgtt gcgggtgctt
5461 ctaccgcagt tgcaacagct gggcaagtta atatgattga tccatggata ttcaacaatt
5521 ttgtccaggc cccccagggt gaatttacca tttctccaaa taataccccc ggtgatattt
5581 tatttgattt acaattgggc ccccacttga atcctttctt agctcattta tcacagatgt
5641 acaatggatg ggttggcaat atgcgggtcc gcatattgct ggcaggcaat gccttcacag
5701 ctggtaaggt aatcatatgt tgtgtccccc ctggctttga tgctagaata cttactattg
5761 ctcaagctac cctatttcct cacttgattg ctgatgttag gactcttgaa ccagtagaat
5821 tacctctcga ggatgtacgc aatgtcctct accacaatag cagccagcca cagccaacca
5881 tgcgactggt ggctatgcta tataccccat tgcgcacagg cggtgggtct ggaggcactg
5941 atgcttttgt ggttgctggg agagttctga catgccccgc accagacttt agttttctgt
6001 tccttgttcc tccctctgta gagcaaaaga ctagggtctt tagtgtcccc aatataccac
6061 tcaaagatct ctcaaattcc cgagtgccaa ccttgatcca gggcatgttt gtttctcctg
6121 atgtcaatca atcggtgcag ttccaaaatg ggcgatgtca aattgatggt cagttgcaag
6181 gtaccacccc agtatccctc agccaattat gtaagatcag aggtaggact tccagtaata
6241 ccagagtgct taaccttagt gaggttgacg ggacaccttt tgtaccactt gagtcccctg
6301 cacctgtagg ttttccagac ataggcgggt gtgattggca tgttggtttc acttttgagg
6361 cacgagacca ggacccctct cagaatgtga cctttgcaac caatgattct agctttgtac
6421 catatcttgg cagtatttca ccccacaatg gtgatgggtt ccatagtggt gacatcatag
6481 gtagtttgga ttggatctca gctccatcgg atggctccgc acttgatgta tggtctatac
6541 caaagtatgg atcatctctt ccagatgtca cccatctggc ccctgcagtt tttccccctg
6601 gctttggtga ggttatcctt tactttcact ctaaatttcc tggttctggc cccactgata
6661 aacttagggt tccatgtttg ataccacaag agtttataac acatttctgt aatgagcaag
6721 cacccatagc gggggaggct gccctccttc actatgtgga ccctgacaca ggtaggaact
6781 taggggaatt caagctttat ccagatggct ttatgacatg tgtgcctaac agcatcagca
6841 gtggtcccca gactctgcca atcaatggtg tgtttgtatt tgtgtcctgg gtatccagat
6901 tttaccaact taagcctgtg ggaacggcct cagcggccag gaggcttggt cttcggcgca
6961 tataatggct caagccatca taggtgccat agcagcttct gctgccggaa gcatactcgg
7021 tgctggcata caagctggtg ctgaggcagg actccaagcc caacggtatc aacaggatct
7081 ccaactacaa cagaatactt tccaacatga tagggaaatg atagggtacc aggtgcaggc
7141 cagtaatgcc ctattggcta agaatctcaa cactagatac actctactgc aggcaggggg
7201 tttgtctagt gcggatgcag ctagggctgt tgcaggcgct cctgttactc gcatagtgga
7261 ttggaacgga acccgtgtgg cagcccccac atcgagcgcc actactttaa aatctggtgg
7321 gttcatgcct gttcctatac ctttaaccca gaaatctaaa caacctttaa tgactgggca
7381 agataatcct aactatgctg cttcttctat ttctagaact gcttcatggg tgcaatccca
7441 aaactctttg agatctatgc ccccttttca taatgatgct ctccggactg tgtgggtcac
7501 gccacctggt tcgtcttcta catcttctat gcagtctagt ttctatggtg tctttaatac
7561 agatagatta ccccttttcg caaataggag gtagggaa
//