Typing tool
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Typing tool
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Complete norovirus genomes
| AB985442 | GII.4 Sydney | |
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| GII.P12 |
ORF1: 1..5081
ORF2: 5062..6681
ORF3: 6681..7487
LOCUS AB985442 7533 bp RNA linear VRL 09-DEC-2016
DEFINITION Norovirus Hu/GII/2-46/Tokyo/1987/JPN genes for polyprotein, capsid
protein VP1, capsid protein VP2, partial cds.
ACCESSION AB985442
VERSION AB985442.1
KEYWORDS .
SOURCE Norovirus Hu/GII/2-46/Tokyo/1987/JPN
ORGANISM Norovirus Hu/GII/2-46/Tokyo/1987/JPN
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Mori,K., Chu,P.Y., Motomura,K., Somura,Y., Nagano,M., Kimoto,K.,
Akiba,T., Kai,A. and Sadamasu,K.
TITLE Genomic analysis of the evolutionary lineage of Norovirus GII.4
from archival specimens during 1975-1987 in Tokyo
JOURNAL J. Med. Virol. 89 (2), 363-367 (2017)
PUBMED 27380721
REMARK DOI:10.1002/jmv.24624
REFERENCE 2 (bases 1 to 7533)
AUTHORS Mori,K.
TITLE Direct Submission
JOURNAL Submitted (25-AUG-2014) Contact:Kohji Mori Tokyo Metropolitan
Institute of Public Health, Department of Microbiology; 3-24-1
Hyakunin-cho, Shinjuku, Tokyo 169-0073, Japan URL
:http://www.tokyo-eiken.go.jp/
FEATURES Location/Qualifiers
source 1..7533
/organism="Norovirus Hu/GII/2-46/Tokyo/1987/JPN"
/mol_type="genomic RNA"
/strain="Hu/GII/2-46/Tokyo/1987/JPN"
/isolation_source="human stool"
/host="Homo sapiens"
/db_xref="taxon:1539788"
/country="Japan:Tokyo"
/collection_date="1987"
/note="genotype: GII"
CDS <1..5081
/note="non structural protein"
/codon_start=3
/product="polyprotein"
/protein_id="BAV24878.1"
/translation="AFAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARPKQPPPRE
ILQSPPRPPTPELVKKIPPPPPNGDDELVVSYSVKDGVSGLPELSTVRQPEEANTAFS
VPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLAKVELT
PLSLFWRPVYTPQYLISPDTLKRLHGESFPYTAFDNKCYAFCCWVLDLNDSWLSRRMI
QRTTGFFRPYQDWNRKPLPTVDDSKLKKVANIFLCALSSLFTRPIKDIIGKLRPLNIL
NILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVP
IVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANE
LAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPDI
VGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKRIAAS
LTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCD
RIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPEVEKAKRDFPG
QPDMWKNAFSPDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHER
LDEYELQGPTLTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVRTMPELKQAL
KNISIKRCQIVYSGCTYTLESDGKGNVKVDRVQSATVQTNNELAGALHHLRCARIRYY
VKCVQETLYSIIQIAGAAFVTTRIAKRMNIQDLWSKPQVEDTEETINKDGCPKPKDDE
EFVVSSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEY
LQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRK
RNPDDFKPKGKLWADDDRSVDYNERLSFEAPPSIWSRIVNFGSGWGFWVSPSLFITST
HVIPQGAQEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLI
KRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIY
KRENDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGASILGPGSASIL
STKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKP
SVLEAAKKTIINVLEQTIDPPQKWSFTQACASLDKTTSSGHPHHIRKNDCWNGESFTG
KLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCA
RAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDAAYSRWDSTQQRAV
LAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFKISINEGLPSGVPCTSQWNSIA
HWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPT
RPDKTEGPLTISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSE
TMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMR
FSDLSTWEGDRNLAPSFVNEDGVE"
gene 5062..6681
/gene="VP1"
CDS 5062..6681
/gene="VP1"
/note="structual protein"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BAV24879.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNIIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLSRMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSHDSTLKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMSNSRFPIPLEKLYTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSAVNICNFRGDVTHIVGSHDYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGLR
TQTTRADGSTRAHKATVSTGSVHFTPKLGSVQFTTDTNNDFQTGQNTKFTPVGVIQDG
DHHQNEPQQWVLPNYSGRTGHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDC
LLPQEWVLHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYITVAHTGPYDLVI
PPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
gene 6681..7487
/gene="VP2"
CDS 6681..7487
/gene="VP2"
/note="structual protein"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BAV24880.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATQKLQQDLMKVKQAVLLEGGFSTTDAARGAIS
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPLGALPGRTNPRVAVPARGPPSTLS
NASTATSVHSNQTVSTRLGSSAGSGTGVSSLPPTARTRNWVEDQNRNLSPFMRGALNT
SFVTPPSSRSSNQGTVSTVPEEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 acgctttcgc tgccgctgtt gccaacagca acaacgacac cgcaaaatct tcaagtgacg
61 gagtgctttc tagcatggct gtcactttta aacgagccct cggggcgcgg cctaaacagc
121 ctcccccgag ggaaatacta caaagtcccc cacgaccgcc taccccagaa ctggtcaaaa
181 agatcccccc tcccccacct aacggggacg atgaattagt ggtttcttat agtgtcaaag
241 atggcgtttc cggtttgcct gagctttcca ctgtcaggca accggaagaa gccaatacgg
301 ccttcagtgt tcccccactc aatcagaggg agaacaggga tgccaaggag ccactgactg
361 gaacaattct ggaaatgtgg gatggagaga tctaccatta cggcctatat gtggagcgag
421 gtcttgtact tggtgtgcac aaaccaccag ctgccatcag cctcgccaag gtcgaactaa
481 caccactctc cttgttctgg agacctgtat acacccccca gtatctcatc tccccagaca
541 ctctcaagag attgcacgga gaatcgttcc cctacacagc ctttgacaac aaatgctatg
601 ccttctgttg ctgggtctta gacctaaacg actcgtggct gagtaggaga atgatccaga
661 gaacaactgg tttctttaga ccctatcaag attggaatag gaaacccctc cctactgtgg
721 atgactccaa attgaagaag gtagctaaca tattcctgtg tgctctatct tcactattca
781 ccaggcccat caaagacata atagggaagc taagacctct taacatcctc aacatcttgg
841 cctcatgtga ttggactttc gcaggcatag tggaatcctt gatactcttg gcagagctct
901 ttggagtttt ctggacaccc ccagatgtgt ctgcgatgat tgcccccttg ctaggtgatt
961 acgagttaca agggcctgag gaccttgcag tggaactcgt tcctatagtg atggggggaa
1021 ttggtttggt gctaggattt accaaagaga agattgggaa gatgttgtca tctgctgcat
1081 ccaccttaag agcttgtaaa gatcttggtg catacgggct agaaatccta aaattagtca
1141 tgaagtggtt cttcccaaag aaagaggaag caaatgagct ggctatggtg agatccatcg
1201 aggacgcggt gctggacctc gaggcaattg aaaacaacca tatgaccacc ctgctcaaag
1261 acaaagacag tctggcaacc tacatgagaa cccttgacct tgaggaggag aaagccagga
1321 agctctcaac caagtctgct tcacctgaca tcgtgggcac aatcaacgcc cttctggcga
1381 gaatcgctgc tgcacgttcc ctggtgcatc gagcgaagga ggagctttcc agcagaccaa
1441 gacctgttgt cgtgatgata tcaggcagac cagggatagg gaagacccac ctcgccaggg
1501 aactggccaa gagaatcgca gcctccctca caggagacca gcgtgtaggt ctcatcccac
1561 gcaatggtgt cgaccactgg gacgcataca agggggagag ggtcgtccta tgggacgact
1621 atggaatgag taatcccatc catgatgccc tcaggttaca agaactcgct gacacttgcc
1681 ccctcactct gaactgtgac aggattgaga acaaaggaaa ggtctttgac agtgatgcca
1741 taattatcac cactaatctg gccaacccag caccactgga ctatgtcaac tttgaggcat
1801 gctcgaggcg catcgatttc ctcgtgtatg cagatgcccc tgaagtcgag aaggcgaaac
1861 gtgattttcc aggccaacct gacatgtgga agaacgcttt cagtcctgat ttctcgcaca
1921 taaaactaac gctggctcca cagggtggct tcgacaagaa tggaaacacc ccacatggga
1981 agggcgtcat gaagactctc accactggct ccctcattgc ccgggcatca gggctactcc
2041 atgagaggtt agatgagtat gagctacagg gcccaactct caccactttc aactttgatc
2101 gcaacaaggt gcttgctttt aggcagcttg ctgctgaaaa caaatacggg ctgatggaca
2161 caatgaaagt tggaagacag ctcaaggatg tcagaaccat gccagagctt aagcaagcac
2221 tcaagaatat ctcaatcaag aggtgccaga tagtgtacag tggttgcacc tatacacttg
2281 agtctgatgg caagggcaat gtgaaagttg acagagttca gagcgccacc gtgcagacca
2341 ataacgagct ggccggcgcc ctacaccatc taaggtgcgc cagaattagg tactatgtca
2401 agtgtgtcca ggagaccctg tattccatca tccaaattgc tggagctgca tttgtcacca
2461 cgcgcattgc caagcgcatg aacatacaag acctctggtc caagccacaa gtggaagaca
2521 cagaggagac tatcaacaag gacgggtgcc caaaacccaa agatgatgag gagttcgtcg
2581 tctcatctga cgacatcaaa actgagggca agaaagggaa gaacaagact ggccgtggca
2641 agaagcacac agccttctca agcaaaggtc tcagtgatga agagtacgat gagtacaaga
2701 gaatcagaga agaaagaaac ggcaagtact ccatagaaga gtaccttcag gacagggaca
2761 agtactatga ggaggtggcc attgccaggg cgaccgagga ggacttctgt gaagaggagg
2821 aggccaagat tcggcagagg attttcaggc caacaaggaa acaacgcaag gaggagaggg
2881 cctctctcgg tttagtcaca ggctctgaaa tcaggaagag gaacccagat gatttcaagc
2941 ccaagggaaa actgtgggct gatgatgaca ggagtgtaga ctacaatgag agactcagtt
3001 ttgaggcccc accaagcatc tggtcgagga tagtcaactt tggttcaggt tggggctttt
3061 gggtttctcc cagcctgttc ataacatcaa ctcatgtcat accccagggc gcacaggagt
3121 tctttggagt ccccatcaag caaattcaga tacacaaatc gggcgaattc tgtcgcttga
3181 ggttcccaaa accaatcagg actgatgtga cgggcatgat cttagaagaa ggtgcgcccg
3241 aaggtaccgt ggccacacta ctcatcaaga ggcctactgg agaacttatg cccttagcag
3301 ccagaatggg gacccatgca accatgaaaa ttcaaggacg cactgttgga ggtcaaatgg
3361 gcatgcttct gacaggatcc aacgccaaaa gcatggatct aggcaccaca ccaggtgact
3421 gcggctgccc ctacatctac aagagggaaa atgactacgt ggttattgga gtccacacgg
3481 ctgccgctcg tgggggaaac actgtcatat gtgccaccca ggggagtgag ggagaggcta
3541 cacttgaagg cggtgacagt aagggaacct actgtggtgc atcaatccta ggcccaggaa
3601 gtgcttcaat actcagcacc aagactaaat tctggagatc atctacaaca ccactcccac
3661 ctggcaccta tgaaccagcc taccttggtg gtaaggaccc cagagtcaag ggtggccctt
3721 cattgcaaca agttatgagg gatcagctga aaccatttac agagcccagg ggcaaaccac
3781 caaagccaag tgtgttggag gctgccaaga aaaccatcat caatgtcctt gaacaaacaa
3841 ttgatccacc tcagaagtgg tcattcacgc aagcttgcgc gtccctcgac aagactactt
3901 ccagtggcca tccgcaccac atacggaaaa acgactgctg gaacggggaa tccttcacag
3961 gcaagttggc agaccaggct tccaaagcca acctgatgtt cgaagagggg aagaacatga
4021 ccccagttta cacaggtgcg cttaaggatg agttggtcaa aactgacaaa atttatggta
4081 agatcaagaa gaggcttctc tggggctcgg acttagcgac catgatccgg tgcgctcgag
4141 cattcggagg cctaatggat gaactcaaag cacactgtgt tacacttcct gtcagagttg
4201 gtatgaatat gaatgaggat ggccccatca tcttcgagag gcattccagg tataaatatc
4261 actatgatgc tgcctactct cggtgggact caacacaaca gagagccgta ttagcagcag
4321 ccctagaaat catggttaaa ttctccccag aaccacatct ggcccagata gttgcagaag
4381 accttctctc tcctagtgtg atggatgtgg gtgacttcaa aatatcaatc aatgagggtc
4441 tcccctctgg ggtgccctgc acctcccaat ggaattccat cgcccactgg ctcctcactc
4501 tctgtgcact ctctgaagtt acaaacttgt cccctgatac catacaggct aattccctct
4561 tctcctttta tggcgatgat gaaattgtca gtacagatat aaagttggac ccagagaaat
4621 tgacagcaaa actcaaggaa tacgggttga aaccaacccg ccctgacaaa actgaagggc
4681 cccttactat ctctgaagac ttgaatggtc tgaccttcct gcggagaact gtgacccgcg
4741 acccagctgg ctggtttgga aaattggaac agagttcaat acttaggcaa atgtactgga
4801 ctaggggccc caaccatgag gacccatctg aaacaatgat accacactcc caaagaccca
4861 tacaattaat gtccctactg ggcgaggccg cactccacgg cccagcattc tacagcaaaa
4921 ttagcaagct agtcattgca gagctgaagg aaggtggcat ggatttttac gtgcccagac
4981 aggagccaat gttcaggtgg atgagattct cagatctgag cacgtgggag ggcgatcgca
5041 atctggctcc cagttttgtg aatgaagatg gcgtcgagtg acgccaaccc atctgatggg
5101 tccgcagcca acctcgtccc agaggtcaac aatgaggtta tggctctgga gcccgttgtt
5161 ggtgccgcta ttgcggcacc tgtagcgggc caacaaaata taattgaccc ctggattaga
5221 aataattttg tacaagcccc tggtggagag tttacagtgt cccctagaaa cgctccaggt
5281 gagatactat ggagcgcgcc cttgggccct gatttgaacc cctatctttc tcatttgtcc
5341 agaatgtaca atggttatgc aggtggtttt gaagtgcaag taatcctcgc ggggaacgcg
5401 ttcaccgccg ggaaagttat atttgcagca gttccaccaa actttccaac tgaaggctta
5461 agccccagcc aggttactat gttcccccat ataattgtag atgttaggca attggaacct
5521 gtgttgatcc ccctacctga tgttaggaat aatttctatc attacaatca atcacatgat
5581 tctaccctta agttgatagc aatgttgtac acaccactca gggctaataa tgccggagat
5641 gatgtcttca cagtctcttg tcgagttctc actaggccat cccccgattt tgatttcata
5701 ttcttggtgc cacccacagt tgaatcaaga actaaaccat tcaccgtccc aatcttaact
5761 gttgaggaaa tgtccaattc aagattcccc attcctttgg aaaagttgta cacgggtcct
5821 agcagtgctt ttgttgtcca accacaaaat ggcagatgca cgactgatgg cgtgctctta
5881 ggcactaccc agctgtcagc tgtcaacatc tgtaacttca ggggggatgt cacccatatt
5941 gtgggcagcc atgattatac aatgaatctg gcttcccaaa attggagcaa ttatgaccca
6001 acagaagaaa tcccagctcc cctgggaaca ccagattttg tggggaagat ccaaggcctg
6061 cgcacccaga ccacaagagc ggatggctcg acccgtgccc acaaagctac agtgagcact
6121 gggagtgtcc acttcactcc aaagctgggt agtgttcaat tcaccaccga cacaaacaat
6181 gatttccaaa ctggccaaaa cacgaaattc accccagttg gcgtcatcca agacggtgat
6241 caccatcaga atgagcccca acaatgggta ctcccaaact actcaggtag aactggtcat
6301 aatgtgcacc tggcccctgc cgttgccccc acttttccgg gtgagcaact ccttttcttt
6361 agatccacta tgcccgggtg tagcgggtac cccaacatga atttggattg cctactcccc
6421 caggaatggg tgctgcactt ctaccaggaa gcagctccag cacaatccga tgtggctctg
6481 ctgagatttg tgaatccaga cacaggtagg gttctgtttg agtgcaagct ccataaatca
6541 ggctatatca cagtggctca caccggcccg tatgacttgg ttatcccccc caatggttat
6601 ttcagatttg attcctgggt caaccagttc tacacacttg cccccatggg aaatggaacg
6661 gggcgcaggc gtgcattata atggctggag ctttctttgc tggattggca tctgatgtcc
6721 tcggctctgg acttggttct ctaatcaatg ctggagctgg ggccatcaac caaaaagttg
6781 aatttgaaaa taacagaaaa ttgcaacaag cttccttcca atttagtagc aacctacaac
6841 aggcttcctt ccaacatgat aaagagatgc tccaagcaca aattgaggct actcaaaaat
6901 tgcaacagga tctgatgaag gttaaacagg cagtgctcct agagggtgga ttttccacaa
6961 cagatgcagc ccgtggggca atcagcgccc ccatgacaaa ggctctggac tggagcggaa
7021 caaggtactg ggcccctgat gccaggacca caacatacaa tgcaggccgc ttttccaccc
7081 ctcagccttt gggggcattg ccaggaagaa ctaatcctag ggttgccgtc cccgctcggg
7141 gcccccccag cacactttct aatgcttcta ctgctacttc tgtgcactca aatcaaactg
7201 tttcaacgag actaggttct tcagctggtt ctggtaccgg tgtctcgagt ctcccgccaa
7261 ctgcaaggac taggaactgg gttgaggacc aaaacaggaa tttgtcacct ttcatgaggg
7321 gggctctcaa cacatcattc gtcacccctc catctagtag atcctctaac caaggcacag
7381 tctcaaccgt gcctgaagaa attttggact cctggactgg cgctttcaac acgcgcaggc
7441 agcctctctt cgctcacatt cgcaaacgag gggagtcacg ggtgtaatgt gaaaagacaa
7501 agttgattat ctttcttttc tttagtgtct ttt
//