Typing tool
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Typing tool
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Complete norovirus genomes
| AB985437 | GII.4 Sydney | |
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| GII.P12 |
ORF1: 1..5081
ORF2: 5062..6681
ORF3: 6681..7487
LOCUS AB985437 7533 bp RNA linear VRL 09-DEC-2016
DEFINITION Norovirus Hu/GII/2-37/Tokyo/1987/JPN genes for polyprotein, capsid
protein VP1, capsid protein VP2, partial cds.
ACCESSION AB985437
VERSION AB985437.1
KEYWORDS .
SOURCE Norovirus Hu/GII/2-37/Tokyo/1987/JPN
ORGANISM Norovirus Hu/GII/2-37/Tokyo/1987/JPN
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Mori,K., Chu,P.Y., Motomura,K., Somura,Y., Nagano,M., Kimoto,K.,
Akiba,T., Kai,A. and Sadamasu,K.
TITLE Genomic analysis of the evolutionary lineage of Norovirus GII.4
from archival specimens during 1975-1987 in Tokyo
JOURNAL J. Med. Virol. 89 (2), 363-367 (2017)
PUBMED 27380721
REMARK DOI:10.1002/jmv.24624
REFERENCE 2 (bases 1 to 7533)
AUTHORS Mori,K.
TITLE Direct Submission
JOURNAL Submitted (25-AUG-2014) Contact:Kohji Mori Tokyo Metropolitan
Institute of Public Health, Department of Microbiology; 3-24-1
Hyakunin-cho, Shinjuku, Tokyo 169-0073, Japan URL
:http://www.tokyo-eiken.go.jp/
FEATURES Location/Qualifiers
source 1..7533
/organism="Norovirus Hu/GII/2-37/Tokyo/1987/JPN"
/mol_type="genomic RNA"
/strain="Hu/GII/2-37/Tokyo/1987/JPN"
/isolation_source="human stool"
/host="Homo sapiens"
/db_xref="taxon:1539783"
/country="Japan:Tokyo"
/collection_date="1987"
/note="genotype: GII"
CDS <1..5081
/note="non structural protein"
/codon_start=3
/product="polyprotein"
/protein_id="BAV24867.1"
/translation="ASAAAVANSNNDIAKSSSDGVLSSMAVTFKRALGARPKQPPPRE
IPQRPPRPPTPELVKKIPPPPPNGEDELVVSYSVKDGVSGLPELSTVRQPDETNTAFS
VPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGFVLGVHKPPAAISLAKVELT
PLSLFWRPVYTPQYLISPDTLKRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSRRMI
QRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGKLRPLDIL
NILASCDWTFAGIVESLILLAELFGVFWTPPDVSALIAPLLGDYELQGPEDLAVELVP
IVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEASE
LAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPDI
VGTINALLARIAAARSLVHRAKEELSSRPRPVVVMILGKPGIGKTHLARELAKRIAAS
LTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCD
RIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYVDAPEVEKAKRDFPG
QPDMWKNAFSPDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHER
LDEYELQGPTLTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVRTMPELKQAL
KNISIKRCQIVYSGCTYTLESDGKGNVKVDRVQSATVQTNNELAGALHHLRCARIRYY
VKCTQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVGDTEETTNKDGCPKPKDDE
EFVVSSDDIKTEGKRGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEY
LQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRK
RNPDDFKPKGKLWADDDRSVDYNERLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITST
HVIPQGAQEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLI
KRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIY
KRENDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGSAPKL
STKTKFWRSSTTPLPPGTYEPAYLGGKDPRIKGGPSLQQVMRDQLKPFTEPRGKPPKP
SVLEAAKKTIINVLEQTIDPPQKWSFTQACASLDKTTSSGHPHHMRKNDCWNGESFTG
KLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCA
RAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDAAYSRWDSTQQRAV
LAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFKILINEGLPSGVPCTSQWNSIA
HWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPT
RPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSE
TMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMR
FSDLSTWEGDRNLAPSFVNEDGVE"
gene 5062..6681
/gene="VP1"
CDS 5062..6681
/gene="VP1"
/note="structual protein"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BAV24868.1"
/translation="MKMASNDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLSRMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQAHDSTLKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMSNSRFPIPLEKLYTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSAVNICNFRGDVTHIVGSHDYTMNLVSQNWNNYDPTEEIPAPLGTPDFVGKIQGLL
TQTTRADGSTRAHKATVSTGSVHFTPKLGSVQFTTDTNNDFQTGQNTKFTPVGVIQDG
DHHQNEPQQWVLPNYSGTSGHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDC
LLPQEWVLHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSSYITVAHTGPYDLVI
PPNGYFRFDSWVNHFYTLAPMGNGTGGRRAL"
gene 6681..7487
/gene="VP2"
CDS 6681..7487
/gene="VP2"
/note="structual protein"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BAV24869.1"
/translation="MAGSFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATQKLQQGLMKVKQAVLLEGGFSTADAARGAIN
APMTKALDWSGTRYWAPEARVTTYNAGRFSTPQPSGALPGRTNPRVPVPARSSPSVLS
NASTATSVHSNQTVSTRLGSSAGSGTVVSSLPSTARTRNWVEDQNRNVSPFMRGALNT
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRIRGESRV"
ORIGIN
1 acgcttccgc tgccgctgtt gccaacagca acaacgacat cgcaaaatct tcaagtgacg
61 gagtgctttc tagcatggct gtcactttta aacgagccct cggggcccgg cctaaacagc
121 ctcccccgag ggaaatacca caaagacccc cacgaccacc taccccagaa ttggtcaaaa
181 agatccctcc tcccccaccc aacggggagg atgaactagt ggtttcttat agcgtcaaag
241 acggcgtttc tggtctgcct gagctttcta ctgtcaggca accggatgaa accaacacgg
301 ccttcagtgt tcccccactc aaccaaaggg agaacaggga tgccaaggaa ccactgactg
361 gaacaattct ggaaatgtgg gacggagaga tctaccatta tggcctgtat gtggaacgag
421 gttttgtact tggtgtgcac aaaccaccag ctgccatcag tcttgccaag gtcgaattaa
481 caccactctc tttgttctgg agacctgtat acactcccca gtatctcatc tccccagaca
541 ctctcaagag actgcatgga gaatcgttcc cctacacagc ctttgacaac aattgctatg
601 cattctgttg ttgggtctta gacctaaacg actcgtggct gagtaggaga atgatccaaa
661 gaacaactgg tttctttaga ccctatcaag attggaatag gaaacccctc cctactatgg
721 atgactccaa attaaagaag gtggctaaca tatttctgtg tgctctatct tcactattca
781 ccaggcccat caaagacata atagggaagc tgagacctct tgacatcctc aacatcttgg
841 cctcatgtga ttggactttt gcaggcatag tggaatcctt gatactcttg gcagagctct
901 ttggagtttt ctggacaccc ccagatgtgt ctgcgttgat tgcccccttg ctaggtgatt
961 acgaactaca ggggcctgag gacctcgcag tggaactcgt tccaatagtg atggggggaa
1021 ttggtttggt gctaggattc accaaagaga agattgggaa gatgttgtcg tctgctgcat
1081 ccaccttaag agcttgtaaa gatcttggtg catacgggct ggaaatccta aaattagtca
1141 tgaagtggtt cttcccaaag aaagaggaag caagcgaact ggctatggtg agatccatcg
1201 aggatgcggt gctggacctc gaggcaattg aaaacaacca catgaccacc ctgctcaaag
1261 acaaagacag tctggcaacc tacatgagaa cccttgacct tgaggaggag aaagccagga
1321 agctctcaac caagtctgct tcacctgata tcgtgggcac aatcaacgct ctcctggcga
1381 gaattgctgc tgcacgttcc ctggtgcatc gagcgaagga ggagctttcc agcagaccaa
1441 gacctgttgt tgtgatgata ttaggcaaac cagggatagg gaagacccac cttgccaggg
1501 aactggccaa gagaatcgca gcttccctca caggggacca gcgcgtaggt ctcatcccac
1561 gcaatggcgt cgaccactgg gacgcgtaca agggggagag ggttgttcta tgggacgact
1621 atggaatgag taatcccatc catgatgccc tcaggctaca agagctcgct gacacttgcc
1681 ccctcacgct aaactgtgac aggatcgaga acaaaggaaa ggtctttgac agtgatgcca
1741 taattatcac caccaatctg gccaacccag caccactgga ctatgtcaac tttgaagcat
1801 gctcgaggcg cattgacttc ctcgtgtatg tagatgcccc tgaagtcgaa aaggcgaaac
1861 gtgatttccc aggccaacct gacatgtgga agaacgcttt cagtcctgat ttctcacaca
1921 taaaactggc gctggcccca cagggtggtt tcgacaagaa tggaaatacc ccacatggga
1981 agggcgtcat gaagactctc accactggct ccctcattgc ccgagcatca ggactactcc
2041 atgagaggtt agatgagtac gagctacagg gcccaactct caccactttc aactttgatc
2101 gcaacaaggt gctcgctttt aggcagcttg ctgctgagaa caaatacggg ctaatggaca
2161 caatgaaagt tggacgacag ctcaaggatg tcagaaccat gccagagctt aaacaagcac
2221 tcaagaatat ctcaatcaag aggtgccaga tagtgtacag tggttgcacc tacacacttg
2281 agtctgatgg caaaggaaat gtaaaagttg acagagttca gagtgccacc gtgcagacca
2341 acaacgagct ggccggtgcc ctacaccatc tgaggtgtgc cagaattagg tattatgtca
2401 agtgtaccca ggaggccctg tattccatca tccaaattgc cggagctgca tttgtcacca
2461 cgcgcatcgt caagcgtatg aacatacaag acctctggtc caagccacag gtgggagaca
2521 cagaggagac taccaacaag gatgggtgcc ctaaacccaa agatgatgag gagttcgtcg
2581 tctcatccga cgacatcaaa actgagggca agagagggaa gaacaagact ggccgtggca
2641 agaagcacac agccttttca agtaaaggtc ttagtgatga agaatacgat gagtacaaaa
2701 ggatcaggga agaaagaaac ggcaagtact ccatagaaga gtaccttcag gacagggaca
2761 agtactatga ggaggtggcc attgccaggg cgaccgagga ggacttctgt gaagaggaag
2821 aggccaagat tcggcaaagg atttttaggc caacaaggaa acaacgcaag gaggagaggg
2881 cctctctcgg tttagtcaca ggctctgaaa tcaggaaaag gaacccagat gatttcaagc
2941 ccaagggaaa gctgtgggct gatgacgaca ggagtgttga ctacaatgag agactcaatt
3001 ttgaggcccc accaagcatc tggtcgagga tagtcaactt tggttcaggt tggggctttt
3061 gggtttctcc cagcctgttc ataacatcaa ctcatgtcat accccagggc gcacaagagt
3121 tcttcggagt ccccatcaaa caaattcaga tacacaaatc gggcgaattc tgtcgcttga
3181 ggttcccaaa accaatcagg actgatgtga cgggcatgat cttagaagaa ggtgcgcccg
3241 aaggcaccgt ggccacacta ctcatcaaga ggccaactgg agaacttatg cccttagcag
3301 ccagaatggg aacccatgca accatgaaaa ttcaagggcg cactgttgga ggccaaatgg
3361 gcatgcttct gacagggtcc aacgccaaaa gtatggatct aggcaccaca ccaggtgact
3421 gtggctgtcc ctacatctac aagagggaaa atgactacgt ggttattggg gtccacacgg
3481 ctgccgctcg tggaggaaac actgtcatat gtgccaccca ggggagtgag ggagaagcca
3541 cacttgaagg cggtgacgat aagggaacct actgtggcgc accaatccta ggcccaggaa
3601 gtgccccgaa actcagcacc aagactaaat tctggagatc atccacaaca ccactcccac
3661 ctggcaccta tgaaccagcc taccttggtg gtaaggaccc cagaatcaag ggtggccctt
3721 cattgcaaca agttatgagg gaccagctga aaccattcac agaacccagg ggcaaaccac
3781 caaagccaag tgtgttagag gctgccaaga aaaccatcat caatgtcctt gaacaaacaa
3841 ttgatccacc tcagaaatgg tcattcacgc aagcctgcgc gtccctcgac aagactactt
3901 ccagtggcca tccgcaccac atgcggaaaa acgactgctg gaacggggaa tccttcactg
3961 gcaagttggc agatcaggct tccaaggcca acttgatgtt cgaagagggg aagaacatga
4021 ccccagttta cacaggtgcg ctcaaggatg agctggtcaa aaccgacaaa atttatggca
4081 agatcaagaa gaggcttctc tggggctcgg acttagcgac catgatccgg tgcgctcgag
4141 cattcggagg cctgatggat gagctcaagg cacactgtgt tacacttcct gtcagagttg
4201 gtatgaatat gaatgaggat ggccccatca tcttcgagag acactccaga tataaatatc
4261 actatgatgc tgcctactcc cggtgggact caacacaaca aagggccgtg ttagcggcag
4321 ccctagaaat catggttaaa ttctccccag aaccgcacct ggcccaaata gttgcagaag
4381 accttctctc tcccagtgtg atggacgtgg gtgacttcaa aatattaatt aatgagggtc
4441 tcccctccgg ggtaccctgc acctctcagt ggaactccat cgcccactgg ctccttactc
4501 tctgtgcact ctctgaagtc acaaacctgt cccctgacat tattcaggcc aattccctct
4561 tttccttcta tggtgatgat gaaatcgtga gtacagatat aaagttggac ccagaaaaat
4621 tgacagcaaa actcaaggaa tacgggttaa aaccaacccg tcctgacaaa actgagggac
4681 cccttgtcat ctctgaagac ctggatggtt tgactttcct gcggagaact gtgacccgcg
4741 acccagctgg ttggtttggg aaattggaac agagctcaat actaaggcaa atgtactgga
4801 ctaggggccc caaccatgaa gatccatctg aaacaatgat accacactcc caaagaccca
4861 tacaattgat gtctttgctg ggcgaggctg cactccacgg cccagcgttt tacagcaaga
4921 ttagcaaact agtcattgca gagctgaagg aaggtggcat ggatttttac gtgcccagac
4981 aagagccaat gttcagatgg atgaggttct cagatctgag cacgtgggag ggcgatcgca
5041 atctggctcc cagttttgtg aatgaagatg gcgtcgaatg acgccaaccc atctgatggg
5101 tccgcagcca acctcgtccc agaggtcaac aatgaggtta tggctctgga gcccgttgtt
5161 ggtgccgcca ttgcggcacc tgtggcgggc caacaaaatg taattgaccc ctggattaga
5221 aataattttg tacaagcccc tggcggagag ttcacagtgt cccctagaaa cgctccaggt
5281 gaaatactat ggagcgcgcc cctgggccct gatttaaatc cctatctttc tcatttgtct
5341 agaatgtaca atggttatgc aggtggtttt gaagtgcaag taatcctcgc ggggaacgcg
5401 ttcactgccg ggaaagtcat atttgcagca gttccaccaa actttccaac tgaaggtcta
5461 agccccagcc aggttactat gttcccccat ataattgtag atgttaggca attggaaccc
5521 gtgctgatcc ccctgcctga tgttaggaat aatttttacc attacaatca agcacatgat
5581 tctaccctca agttgatagc aatgttgtac acaccactta gagctaataa tgccggggat
5641 gatgtcttta cagtctcttg tcgagttctc acgaggccat cccccgattt tgactttata
5701 ttcctggtgc cacccacagt tgaatcaaga actaaaccat tcactgtccc aatcttaact
5761 gttgaggaaa tgtctaattc aagattcccc attcctttgg aaaagctata cacgggtcct
5821 agcagtgcct ttgttgtcca accacaaaat ggcagatgta cgactgatgg ggtactctta
5881 ggcaccaccc agctgtcagc tgtcaatatc tgtaacttta ggggggatgt cacccatatt
5941 gtgggtagcc atgactatac aatgaatttg gtatcccaaa attggaataa ttatgaccca
6001 acagaagaaa tcccagctcc cctgggaacg ccagactttg tgggaaagat ccaaggcttg
6061 ctcacccaga ccacaagagc ggatggctcg acccgcgccc acaaagctac agtgagcact
6121 gggagtgtcc acttcactcc aaagctgggt agtgttcaat tcaccactga tacaaataat
6181 gatttccaaa ctggccaaaa cacaaaattc accccagttg gcgtcattca agacggtgat
6241 caccatcaga atgaacccca acaatgggta ctcccaaact actcaggcac atctggtcat
6301 aatgtacatc tggcccctgc cgttgccccc actttcccgg gtgagcagct tcttttcttt
6361 agatccacta tgcccggatg tagcgggtat cccaacatga atctggattg cctgctcccc
6421 caggagtggg tgctgcactt ttaccaggaa gcagccccag cacaatccga tgtggccctg
6481 ctgagatttg tgaatccaga tacaggtagg gtcctgtttg agtgcaaact ccataaatca
6541 agttacatca cagtggctca cactggcccg tatgatttgg ttattccccc caatggttat
6601 tttaggtttg attcttgggt caatcacttc tacacactcg cccccatggg aaatggaacg
6661 gggggcaggc gtgcattata atggctggat ctttctttgc tggattggca tctgatgtcc
6721 tcggctctgg acttggttct ctaatcaatg ctggagctgg agccatcaat caaaaagttg
6781 aatttgaaaa taatagaaaa ttacaacaag cttccttcca atttagtagt aatctacaac
6841 aggcttcctt ccaacatgat aaagagatgc tccaagcaca aattgaggct actcaaaaat
6901 tgcaacaagg tctgatgaag gttaaacagg cagtgctcct agagggtgga ttttccacag
6961 cagatgcggc ccgtggggca atcaacgccc ccatgacaaa ggctctggac tggagcggta
7021 caaggtactg ggcccctgaa gccagggtca caacatacaa tgcaggccgc ttctccaccc
7081 ctcagccctc gggggcactg ccaggaagga ctaatcctag ggttcccgtt cctgctcgga
7141 gctctcccag tgtactttct aatgcttcta ctgctacctc tgtgcattca aatcaaactg
7201 tttcaacgag actaggttct tcagctggtt ctggtaccgt tgtctcgagt ctcccgtcaa
7261 ctgcaaggac taggaactgg gttgaggatc aaaacaggaa tgtgtcacct ttcatgaggg
7321 gggctctcaa cacatcgttc gtcacccctc catctagtag atcctccagc caaggcacag
7381 tctcaaccgt gcctaaagaa attttggact cctggactgg cgctttcaac acgcgcaggc
7441 agcctctctt cgctcacatt cgcatacgag gggagtcacg ggtgtaatgt gaaaagacaa
7501 gattgattat ctttcctttc tttagtgtct ttt
//