Typing tool
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Typing tool
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Complete norovirus genomes
| AB983218 | GII.17 | |
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| GII.P17 |
ORF1: 1..5107
ORF2: 5088..6704
ORF3: 6704..7483
LOCUS AB983218 7550 bp RNA linear VRL 31-OCT-2015
DEFINITION Norovirus Hu/GII/JP/2014/GII.P17_GII.17/Kawasaki323 genomic RNA,
nearly complete genome.
ACCESSION AB983218
VERSION AB983218.1
KEYWORDS .
SOURCE Norovirus Hu/GII/JP/2014/GII.P17_GII.17/Kawasaki323
ORGANISM Norovirus Hu/GII/JP/2014/GII.P17_GII.17/Kawasaki323
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Matsushima,Y., Ishikawa,M., Shimizu,T., Komane,A., Kasuo,S.,
Shinohara,M., Nagasawa,K., Kimura,H., Ryo,A., Okabe,N., Haga,K.,
Doan,Y.H., Katayama,K. and Shimizu,H.
TITLE Genetic analyses of GII.17 norovirus strains in diarrheal disease
outbreaks from December 2014 to March 2015 in Japan reveal a novel
polymerase sequence and amino acid substitutions in the capsid
region
JOURNAL Euro Surveill. 20 (26), 21173 (2015)
PUBMED 26159307
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7550)
AUTHORS Shimizu,H., Matsushima,Y. and Ishikawa,M.
TITLE Direct Submission
JOURNAL Submitted (15-AUG-2014) Contact:Hideaki Shimizu Kawasaki City
Institute for Public Health, Division of Virology; 3-25-13
Tonomachi, Kawasaki-ku, Kawasaki, Kanagawa 210-0821, Japan
FEATURES Location/Qualifiers
source 1..7550
/organism="Norovirus
Hu/GII/JP/2014/GII.P17_GII.17/Kawasaki323"
/mol_type="genomic RNA"
/strain="Hu/GII/JP/2014/GII.P17_GII.17/Kawasaki323"
/host="Homo sapiens"
/db_xref="taxon:1537090"
/country="Japan: Kanagawa, Kawasaki"
/collection_date="2014"
/note="genotype GII.P17_GII.17"
gene <1..5107
/gene="POL"
CDS <1..5107
/gene="POL"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="BAP33933.1"
/translation="KMASNDASAAVAGKNNNNDKEKSSSDSLFSNMTVTFKKALGARP
KQPPPGETKQIQKPPRPPTPELVKRIPPPPPNGEDEPKIVYKVGEGVSGLPNLTTVAQ
PDAQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAA
ISFAKIELTPLSLYWRVVYTPQYLIAPETLKNLSGETFPYTAFDNNCDAFCCWVLDLN
DSWLSRRMIQRTTGFFRPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDII
GKLRPLNILNVLATCDWTFAGIVESMILLAELFGVFWTPPDVSAMIAPLLGDYEMQGP
EDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWF
FPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKL
STKSASPDIVGTINSLLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLAR
ELAKKVASTLSGDQRIGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELAD
TCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDI
EKAKRDFPGQPDMWKDHYRPDFTHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIA
RASGLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVK
TLDELKQAIKNISIKKCQIVYNGCTYTMESDGRSKVVVEKVQNATVQTNNELVGALHH
LRSARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDKG
GCPKPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREER
NGKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLG
LVTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWV
SPSLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAP
EGTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTP
GDCGCPYIYKRGNDFVAIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPI
LGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFT
EPRGKPPNPNVLESAKRTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKND
YWSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGS
DLSTMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSR
WDSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVP
CTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAK
LKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTR
GPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPR
QESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5088..6704
/gene="VP1"
CDS 5088..6704
/gene="VP1"
/codon_start=1
/product="capsid protein VP1"
/protein_id="BAP33934.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAETDHRDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGV
ASQRNVGNDAPGSTRAHEAVISTYSPQFVPKLGSVNFRSNDNDFQLQPTKFTPVGIND
DGDHPFRQWELPDYSGLLTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIVDCL
IPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6704..7483
/gene="VP2"
CDS 6704..7483
/gene="VP2"
/codon_start=1
/product="capsid protein VP2"
/protein_id="BAP33935.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVKATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPNAPQSKPAKPRSLAPSSSSSSVYSMSTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 gaagatggcg tctaacgacg cttccgctgc cgttgctggc aaaaacaaca acaacgacaa
61 ggagaaatct tcaagtgaca gcttgttttc taacatgact gttactttta agaaagccct
121 cggggcgcgg cctaaacaac cgcccccggg agaaacaaaa caaatacaaa aaccaccaag
181 gccaccgaca ccggaattgg tgaagagaat acccccaccc ccacccaatg gcgaggatga
241 accaaagata gtgtataagg tgggagaggg tgtgtctggg ctgcccaacc taacaactgt
301 ggcacagcct gacgcacaaa acacagctta tagtgttccc ccacttagcc agagagaagt
361 cggcgaagct aaagaaccgc tgcctggctc cattctggaa atgtgggatg gtgagatcta
421 ccactatggg ctgtatgttg agcgggggca tgtactcgga gtacacaaac cacctgctgc
481 aataagcttt gccaaaattg aattaacacc gctgtctctc tactggagag tggtctacac
541 tccccagtat ttgatagctc cagaaactct taagaacttg agtggagaga ctttcccata
601 cacggccttt gacaacaact gtgatgcctt ctgttgttgg gtcctagacc tcaacgactc
661 ctggcttagc aggagaatga tccaaagaac aactggattc ttcagaccgt atcaggattg
721 gaacagaaaa cccttaccaa ccatggatga accgaaaatc aagaaggccg cgaatgctgt
781 tctgtgcgct ctctcctcac tcttcactag acccattaag gacatcattg gaaagcttag
841 accactgaac attcttaatg tactggcaac ttgtgactgg acttttgcag gcatagtgga
901 atccatgatc cttcttgctg aactctttgg ggtgttctgg acccccccag atgtgtctgc
961 gatgattgct cccttactcg gtgactacga gatgcaaggc cccgaagacc tggccgtgga
1021 acttgtgccc gtggtaatgg gaggaatagg tttggtgtta ggattcacca aggaaaagat
1081 cggcaagatg ctttcatcag ctgcgaccac acttagggcc tgcaaggatc taggatctta
1141 tggattggag atactcaaat tggtcatgaa gtggttcttc cccaagaagg aggaggctaa
1201 cgaactagcc atggtgaggg ccattgagga tgcagtcctg gatttggagg caatagaaaa
1261 caaccacatg accacccttc tcaaggataa agacagcctg gccacataca tgaggactct
1321 tgacttggaa gaagagaaag caaggaaact gtcaaccaaa tcggcgtcac ctgacatcgt
1381 gggtacaata aactcattat tggcaaggat agcagccgcc aggtcactgg tccacaaggc
1441 taaggaggag ctctcgagca gacagagacc tgttgttgta atgatatcag gtagaccagg
1501 tataggaaag acccatctag ccagagagct agccaagaaa gttgcgtcaa cactgtcagg
1561 cgaccaaagg attggactga tacctagaaa tggcgtcgac cattgggacg cctacaaggg
1621 agaaagggtg gttctgtggg atgattatgg tatgagcaac cctatacagg acgcactgag
1681 gctccaagaa ttggctgaca cctgtcctct gaccctgaat tgtgacagga ttgaaaacaa
1741 aggaaaagtg ttcgacagtg atgccataat tataacaacc aaccttgcaa acccagcacc
1801 actagactat gtcaactttg aggcctgctc tagacgcata gacttcttgg tgtatgcaga
1861 cgcacctgac atcgagaagg ctaagcgtga tttccctggc caaccagata tgtggaaaga
1921 ccattacaga ccagacttca cacacattaa acttcagctg gcaccacagg gaggttttga
1981 caaaaatggc aacaccccac atggcaaagg tgtagtgaag tctctgacga ttggttctct
2041 gatcgccagg gcttctggct tgctccacga gagaatggat gaattcgagc tccagggctc
2101 tgacctgcca accttcaatt ttgaccgcaa caaagtcgcc gccttcagac aattagcagc
2161 tgaaaacaaa tatggtctta tggacacact gagggtcggc aaccaactga aaagtgtcaa
2221 gaccctggat gagctgaaac aggccataaa gaacatcagt atcaagaagt gccagatagt
2281 gtataatgga tgcacctata ccatggaatc tgatgggagg agcaaggttg tggttgaaaa
2341 ggtacaaaac gcaacagttc aaaccaacaa tgaacttgta ggggcactcc accacctgag
2401 atctgcaagg ataagatact atgttaaatg tttccaagaa gccatttact ctctactcca
2461 aattgctggt gcagccttcg tcacctcacg catcgtgagg cgcatgaaca tctcaaacct
2521 ctggtcgaag ccacccatcg aggagggtga tgagcctgaa gacaaaggag gatgccccaa
2581 gcccagggat gaagatgacc tcactattga ctctagagac attaaagtag aagggaagaa
2641 gggcaagaac aagtctggtc ggggcaagaa acacacagcc ttctcatcca agggcctcag
2701 tgatgaagag tacgatgagt acaagagaat cagagaggag aggaatggca aatactcaat
2761 agaggaatac ctccaagata gggacagata ctatgaagag cttgccattg ctaaggccac
2821 tgaggaggac ttctgtgaag aggaggagat caaaatccgc cagagaatct tccgacccac
2881 caggaagcag cggaaagagg aaagggccac gcttgggctt gtcacaggat cggaaatcag
2941 aaagaggaat ccagatgact ttaaaccaaa aggaaaattg tgggctgatg acaacaggag
3001 cgtggattac aatgagagga tagattttga ggctcccccg agtgtttggt ctaggatagt
3061 caactttggc acaggctggg gattctgggt ttctccaagt ctctttataa cttcaacaca
3121 cgtcatacca aaaggaatca ctgaggcctt tggagtgccc ataaaccaaa tccaaattca
3181 caaatctgga gaattttgcc gcttgcggtt tccaaagcca atcagaccag acgtgagtgg
3241 gatgatcttg gaagagggtg cccctgaagg cactgttgtg tctattctca tcaaaaggac
3301 aacaggggag ctgatgcctc ttgcagtcag aatggggact catgccacaa tgaaaatcca
3361 aggtagaacg gtgggtggtc agatgggtat gcttctcact ggctcaaatg ctaaaagcat
3421 ggatctaggc acaacgccag gcgactgcgg gtgtccatac atatacaaaa ggggcaatga
3481 cttcgtggcc attggggtgc acactgcagc agcacgtgga ggcaacacgg tcatatgtgc
3541 cacacaggga agtgaaggtg aagccactct tgaaggaggt gacaacaagg gtacctattg
3601 tggagccccc attttgggac ctggcaatgc accaaaattg agcacaaaaa caaaattctg
3661 gagatcctca aacgcaccgc ttcccccagg tacttatgaa ccagcatacc ttggtgggag
3721 agacccgcgc gtgaagggag gcccatctct gcaacaagtt atgagagacc aacttaaacc
3781 ttttacagag cccagaggga agccaccaaa cccaaatgtc ctagagtcag caaagaggac
3841 tatcatcaat gttctggaac aaaccattga cccccctcaa aagtggtcat atgcccaagc
3901 ttgtgcatcc ctcgacaaga caacctccag tggatacccg caccacgtcc ggaagaatga
3961 ctattggagt ggtgaatcct tcacagggaa acttgcagac caggcttcaa aagcaaatct
4021 catgtatgag gaaggcaagc acatgcaacc agtttacacc gcagcactca aagacgagct
4081 cgtgaaaact gacaaaattt atggcaagat caagaaaagg ctcctgtggg gttctgacct
4141 ctccaccatg attcgatgcg ccagagcatt tggtggtctc atggatgagt tcaaagcaaa
4201 ttgtattaca ctccctatca gagttggtat gaatatgaat gaagacggtc ccataatatt
4261 tgagaaacac tccaggtaca ggtaccacta tgatgctgat tactcccgct gggactccac
4321 acaacagcgg gcagtgctgg aagcggcact tgaaatcatg gtgagatttt ctgctgagcc
4381 acagctggca caaatagtgg cagaggacct gctgtcacca agtgtggttg atgtgggcga
4441 tttcaaaatc gctatcaatg aaggcctacc atctggcgtg ccctgcacct cacaatggaa
4501 ttctattgcc cactggttac tcaccctgtg tgccctttct gaagtgacag gactaggtcc
4561 tgacatcata caagccaact ccatgtactc tttctatggt gatgatgaga ttgtgagcac
4621 agacataaaa ttggacccag agaaattgac cgcaaaactc aaagaatatg gccttaaacc
4681 cactcggccc gacaaaactg aggggccgct ggtgattagt gaagacctga atgggttgac
4741 tttcctccgc cgaacagtca cccgtgatcc agcaggttgg tttggaaagt tggaccaaaa
4801 ctccatcctc aggcagttgt actggacaag aggacccaac catgaagacc ccagtgagac
4861 catgatacca cacgcacaga gacctgtgca gctcatggca ctactaggag aatcctccct
4921 acatggaccc tcattttaca gcaaggttag caaactggtc atatctgaac ttaaagaggg
4981 aggaatggat ttttatgtgc ccagacaaga gtcaatgttc agatggatga ggttctcaga
5041 tctaagcaca tgggagggcg atcgcaatct ggctcccagt tttgtgaatg aagatggcgt
5101 cgaatgacgc cgctccatct aatgatggtg ctgctggtct cgtaccagag ggcaacaacg
5161 agacccttcc cctagaacca gttgcgggcg cagctatagc cgcacccgtc actggccaaa
5221 acaacataat tgacccctgg attagaacaa attttgtgca agcaccaaat ggagagttca
5281 cagtgtcacc cagaaactcc cctggagaaa ttttactaaa cctagagttg ggccctgatt
5341 tgaaccctta tttggctcat ttgtcaagga tgtacaatgg gtatgctggt ggagtggaag
5401 ttcaggttct cctggcaggg aacgcgttca ctgccggaaa gatcctcttc gccgccgtcc
5461 cgccaaattt cccagtggaa ttcttaagcc cagcccagat tacaatgctc ccacatttaa
5521 tagtagatgt caggactctt gaaccaatta tgatcccact ccctgatgtt aggaatacat
5581 tcttccatta taacaaccag cctaacagcc gcatgagatt agtggctatg ctctacaccc
5641 cccttagatc taatggctca ggtgatgatg tctttactgt ctcttgcagg gttttgacta
5701 ggcctactcc tgattttgag ttcacttatt tagtgccacc ttctgttgaa tctaagacta
5761 agcctttttc cttacctatt ttaacccttt ctgagctcac aaattcgagg ttcccagtcc
5821 ccatcgattc gcttttcacc gcccagaata atgtgttgca ggtgcagtgt caaaatggca
5881 ggtgcacact tgatggtgag ttacaaggca caacccagtt gctcccatct ggcatctgtg
5941 cattcagagg acgggtgaca gcagaaactg accatcgtga caagtggcac atgcaactgc
6001 aaaacctcaa tggcacaaca tatgacccaa ctgatgatgt gccagccccg ctgggtacac
6061 ctgacttcaa gggcgtcgtg tttggggtag caagccaaag aaatgtgggt aatgatgcgc
6121 ctggctcaac cagggcccat gaggcggtga tttcaaccta tagcccccaa tttgtcccca
6181 agttaggttc tgtcaatttt agaagtaatg ataatgattt ccaattgcag ccgacaaaat
6241 tcacaccagt gggcatcaat gacgatggtg accacccgtt cagacagtgg gaactaccag
6301 actattcagg gctgcttacc ttgaatatga accttgcccc cccggttgct ccaaatttcc
6361 ctggtgaaca attattattc ttcagatctt ttgtgccatg ctcaggaggt tataaccaag
6421 gcattgtaga ttgtcttatt ccccaagaat ggatccaaca cttctatcag gaatcagcgc
6481 cctcccagtc agacgtggcc ctaatcaggt atgtcaaccc cgatacggga cgtacactgt
6541 ttgaagcaaa attgcacaga tctggttaca ttactgtggc tcactctgga gactatcctc
6601 ttgttgttcc ggctaatgga tactttagat ttgattcttg ggtaaatcag ttttactcac
6661 tcgccccaat gggaactggg aatgggcgaa ggagggctca gtaatggctg gagctttcat
6721 tgcaggattg gcaggcgaca tgctcacgtc atctgtgggc tccctggtga acgcaggggc
6781 aaacgccatc aaccaaaaga tagactttga aaacaacaaa caactccagt ctgcttcctt
6841 tcagcatgat aaagagatgc tccaagcgca ggtgaaggca accaagcagc tgcaatctga
6901 aatgatagcc ctaaaacagg gggttttggc cgcaggcggc ttttccccca ctgatgcagc
6961 aaggggagcc attggtgcac ccatgacaaa ggtgcttgac tggtctggca ctcgatactg
7021 ggcacccaat tccacaaaga caactggtta ttcgggacaa ttcacctctt cacctgtgca
7081 catgcctagc ccaaatgctc cacaatcaaa acctgcaaag cctaggtctc tagctccttc
7141 ttcttcttct agtagtgtct atagtatgtc tactcaatca actcatttaa catctggctc
7201 ttctagtaat gcttcttctg cctctacaaa attgacaaac ttaagctctg gctcctctca
7261 aaacagaaca gcagagtggg tgaaccaaca gagaagtctt agccctttca tgagtggcgc
7321 actcaatatc tcacatgtca cgccaccctc aagtagggct tccagttctg ggacggtctc
7381 gaccgtgccc aaggaagttt tggactcctg gacgtctgcg tttaacacac acagacagcc
7441 gctcttcgca cacctcagag tgagggggga gtcacgtgtt tagtgaaaag aaataattgg
7501 ctataatgtg atttcttttt aaaatttggc taatttgtat cttttaaaaa
//