Typing tool
|
Complete norovirus genomes
AB972499 | GII.4 Sydney | ||
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GII.P31 |
ORF1: 1..5100 ORF2: 5081..6703 ORF3: 6703..7509LOCUS AB972499 7509 bp RNA linear VRL 08-JAN-2016 DEFINITION Norovirus Hu/GII.4/GII4-HK01/2011/JP RNA, complete sequence. ACCESSION AB972499 VERSION AB972499.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/GII4-HK01/2011/JP ORGANISM Norovirus Hu/GII.4/GII4-HK01/2011/JP Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Sato,H., Yokoyama,M. and Motomura,K. TITLE Evidence for antigenic variation in norovirus outbreaks in Japan between 2006 and 2012 JOURNAL Unpublished REFERENCE 2 (bases 1 to 7509) AUTHORS Sato,H., Nakamura,H. and Motomura,K. TITLE Direct Submission JOURNAL Submitted (02-JUL-2014) Contact:Kazushi Motomura National Institute of Infectious Diseases, Pathogen Genomics Center; Gakuen 4-7-1, Musashi-Murayama, Tokyo 208-0011, Japan FEATURES Location/Qualifiers source 1..7509 /organism="Norovirus Hu/GII.4/GII4-HK01/2011/JP" /mol_type="genomic RNA" /strain="Hu/GII.4/GII4-HK01/2011/JP" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1518371" /country="Japan:Hokkaido" CDS 1..5100 /note="contains N-terminal, NTPase, 3A, VPg, 3Cpro and 3Dpol" /codon_start=1 /product="polyprotein" /protein_id="BAU24929.1" /translation="MKMASNDASAAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARP KQPPPKEIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPE ETNTAFSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAIS LAKVELTPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGK LKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED LAVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGKPGIGKTHLAREL AKKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTM PDLKQALKNIAIKKCQIVYNGSTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLR CARIRYYVKCVQEALYSIIQIAGAAFVTTRIARRMNIQNLWSKPQVEDTEEMANKDGC LKPKDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIRDERNG KYSIEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV TGSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILG PGSAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP RGKPPRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCW NGESFTGRLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKIKKRLLWGSDL ATMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWD STQQRDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCT SQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK EYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP NHEDPFETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5081..6703 /codon_start=1 /product="VP1" /protein_id="BAU24930.1" /translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHITGSRNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDHDFEANQNTKFTPVGVIQDG STTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRVV" CDS 6703..7509 /codon_start=1 /product="VP2" /protein_id="BAU24931.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGVLPGRANLRDAVPARGSSSKSS NSSTATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQSRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 atgaagatgg cgtctaacga cgcttccgct gccgctgttg ccaacagcaa caacgacatc 61 gcaaaatctt caagtgacgg tgtgttttct aacatggctg tcacttttaa acgggccctc 121 ggggcgcggc ctaaacagcc gcccccgaag gaaataccac ccagaccccc gcgaccaccc 181 acaccagaat tggtcaaaaa gatccctcct cccccaccca acggggagga tgaactagtg 241 gtctcctaca gcgccaaaga tggcgtttcc ggactgcctg agctcaccac tgtcagacaa 301 ccggaagaaa ccaacacggc gttcagtgtc cccccactca accaaaggga gagcagggac 361 gccaaggagc cactaactgg aacaattatt gaaatgtggg atggagaaat ctaccattac 421 ggcctgtacg tggaacgagg tcttatactt ggtgtgcaca agccaccggc agccatcagc 481 cttgccaagg tcgagctaac accgctctct ttgttctgga gacctgtata caccccccag 541 tatctcatct ctccagacac tcttaggaga ctacatggag agtcattccc ctacactgca 601 tttgacaaca attgctacgc cttttgttgt tgggtattag acctaaacga ctcatggcta 661 agcaggagaa tgattcagag aacaacaggt ttcttcaggc cgtaccagga ttggaacagg 721 aaacccctcc ccactatgga tgattccaaa ttaaagaagg tagccaacat attcttgtgc 781 actttgtctt cactattcac cagacccatt aaggacataa tagggaagtt gaaacctctt 841 aacatcctta acattctggc tacatgtgat tggaccttcg caggcatagt ggaatcctta 901 atactcttgg cagaactctt tggagttttc tggacacccc cagatgtgtc tgcgatgatc 961 gcccccttgc taggtgatta tgaactgcaa ggacctgagg accttgcagt ggaactggtc 1021 ccaatagtga tgggggggat aggtttggtg ttaggattca ccaaagagaa aattggaaaa 1081 atgctatcat ccgctgcatc cactttaaga gcttgtaaag accttggtgc atacggactg 1141 gaaatcttaa aactggtcat gaagtggttc ttcccaaaga aagaggaagc aaatgaactg 1201 gctatggtga ggtccatcga ggatgcagtg ctagacctcg aggcaattga aaacaaccac 1261 atgaccaccc tactcaaaga caaagacagc ttggcaacct acatgagaac ccttgacctt 1321 gaggaggaga aagccagaaa actctcaacc aaatctgctt cacccgatat tgtgggcaca 1381 atcaactctc ttctggcaag aatcgctgct gcacgttccc tagtgcatcg ggcgaaagaa 1441 gagctctcca gcaggccgag acctgtcgtt gtgatgatat cgggaaaacc agggataggg 1501 aaaactcacc ttgccaggga gctggccaag aagatcgcgg cctccctcac aggggaccag 1561 cgtgtgggtc ttatcccgcg caatggtgtc gaccactggg acgcatacaa gggtgaaaga 1621 gttgtcctat gggacgatta tggaatgagc aaccccatcc atgatgccct caggttgcag 1681 gagcttgctg acacttgccc cctcacgcta aattgtgata gaattgagaa caaagggaaa 1741 gtctttgaca gtgatgccat aattatcacc accaatctgg ccaacccagc accactggat 1801 tatgtcaact ttgaagcgtg ctcgagacgc attgatttcc tcgtgtacgc agaagcccct 1861 gaggtggaga aggcaaagcg cgacttccca ggtcaacctg acatgtggaa gaacgctttc 1921 agccctgact tctcacacat aaaactgtca ttggctccac agggtggttt tgataagaac 1981 ggcaacaccc cgcatggaaa aggggtcatg aagaccctca ccaccggctc cctcatcgcc 2041 cgagcatcag ggttactcca tgagaggcta gatgaatatg aactgcaagg cccagccctc 2101 accactttca actttgaccg caacaagata cttgctttta gacagcttgc tgctgaaaac 2161 aagtatgggc tgatggacac aatgagagtt ggaaaacagc tcaaggatgt caagaccatg 2221 ccagacctca aacaagcact caagaatatc gcgatcaaga agtgccagat agtgtacaat 2281 ggtagcacct acacacttga ggccgatggc aagggtagtg tgaaagttga caaagtgcaa 2341 agcgccactg tgcagaccaa caatgaacta gccggtgccc tacaccacct aaggtgcgct 2401 agaatcagat actatgttaa gtgcgtccag gaggcactgt actccatcat ccaaatcgct 2461 ggggctgcat tcgtcaccac gcgcatcgct aggcgcatga atatacagaa tctctggtcc 2521 aagccacagg tggaagacac agaagagatg gccaacaaag atggttgcct aaagcccaaa 2581 gatgatgaag agtttgtcgt ctcatccgac gacatcaaaa ctgagggtaa gaaagggaag 2641 aacaagtccg gccgtggcaa gaagcacaca gccttttcaa gcaaagggct cagtgatgag 2701 gagtacgatg agtacaagag aatcagagac gaaaggaatg gtaagtattc catagaagag 2761 taccttcagg acagagacag gtactacgag gaggtggcca ttgccagggc aaccgaagaa 2821 gacttctgtg aagaagaaga ggccaaaatc cggcagagaa ttttcagacc aacaaggaaa 2881 caacgcaaag aagagagggc ctctctcggc ttggtcacag gctctgaaat caggaagaga 2941 aacccagaag atttcaaacc caagggaaag ctgtgggctg atgatgacag aagtgttgac 3001 tacaatgaga aactcaactt tgaggcccca ccaagcatct ggtcgcggat agtcaacttt 3061 ggttcaggtt ggggcttctg ggtctccccc agtctgttta taacatcaac ccatgtcata 3121 ccccaaggtg caaaagagtt cttcggagtc cctatcaagc aaatccagat acacaaatca 3181 ggtgaattct gccgattgag attcccaaaa ccaatcagaa ctgatgtgac gggcatgatc 3241 ctagaagaag gtgcgcccga agggaccgtg gccacactgc tcatcaagag accaactgga 3301 gagctcatgc ctctggcagc cagaatgggg acccatgcaa ccatgaaaat tcaggggcgc 3361 acagttggag ggcaaatggg tatgctcctg acaggatcca acgccaagag tatggaccta 3421 ggcacaacac caggcgactg cggctgcccc tacatctaca agagggggaa tgactacgtg 3481 gtcataggag tccatacggc cgctgcccgt ggaggaaaca ctgtcatatg tgccacccag 3541 gggagtgagg gagaagccac acttgaagga ggtgatagta aagggacata ctgtggtgca 3601 ccaatcttgg gcccagggag cgctccgaag ctcagtacca agactaagtt ttggagatca 3661 tccacaacac cactcccacc cggcacctac gaaccagcct acctcggtgg caaagacccc 3721 agagtcaaag gtggcccttc attgcaacaa gttatgaggg accagctaaa gccattcaca 3781 gaacccagag gcaaaccacc aagaccaaac gtgttggagg ccgccaagaa aaccatcatc 3841 aatgtccttg agcaaacaat tgatccaccc caaaaatggt cattcgcgca agcttgcgca 3901 tcccttgaca aaaccacctc cagcggccac ccgcaccaca tgcggaaaaa cgattgttgg 3961 aatggggagt ccttcacagg aagattggct gatcaggcct ccaaggccaa cctaatgttt 4021 gaagagggaa agaacatgac tccagtctac acaggtgcac ttaaagatga gttggtaaag 4081 accgataaag tttatggtaa gatcaagaag aggcttctgt ggggttcaga tctggcgacc 4141 atgatacggt gcgcccgagc tttcggaggc cttatggatg aactcaaggc acattgtgtc 4201 acacttcctg tcagagttgg tatgaacatg aatgaggatg gccccatcat ctttgagaag 4261 cactccagat atagatatca ctatgatgct gattattccc ggtgggactc aacacagcaa 4321 agggatgtgc tagcagcagc actagaaatc atggttaagt tctctccaga accacatttg 4381 gcccagatag ttgcagaaga cctcctttcc cctagcgtaa tggatgtagg tgacttccaa 4441 atatcaataa gtgagggtct cccctctggg gtaccttgta cctcccagtg gaattccatc 4501 gcccactggc tcctcactct ttgtgcactc tctgaagtca cggacctgtc ccctgacatc 4561 attcaggcca actccctttt ctccttctat ggtgatgatg agattgtaag cacagacata 4621 aagttggacc cagagaagct gacagcaaaa ctcaaggagt acgggctgaa accaacccgc 4681 cccgacaaaa ctgaaggacc ccttgttatc tctgaagacc tggatggcct gacattcctc 4741 cggagaaccg tgacccgtga tccagctggc tggtttggaa aattggaaca aagttcaatt 4801 ctcaggcaaa tgtactggac caggggtccc aaccatgaag atccatttga aacaatgata 4861 ccacactccc aaagacctat acaattgatg tccttgctgg gcgaggctgc actccacggc 4921 ccggcatttt atagcaaaat tagcaagtta gtcattgcag agttgaagga aggtggcatg 4981 gatttttacg tgcccagaca agagccaatg ttcagatgga tgagattctc agatctgagc 5041 acgtgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgagtga 5101 cgccaaccca tctgatgggt ccgcagccaa cctcgtccca gaggtcaaca atgaggttat 5161 ggctctggag cccgttgttg gtgccgccat tgcggcacct gtagcgggcc aacaaaatgt 5221 aattgacccc tggattagaa acaattttgt acaagcccct ggtggagagt ttacagtatc 5281 ccctagaaac gctccaggtg agatactatg gagcgcgccc ttaggccctg atctaaatcc 5341 ctacctttcc catttggcca gaatgtacaa tggttatgca ggtggttttg aagtgcaggt 5401 aattctcgcg gggaacgcgt tcaccgccgg gaaggtcata tttgcagcag tcccaccaaa 5461 ttttccaact gaaggcttaa gccccagcca ggtcactatg ttcccccata taatagtaga 5521 tgttagacaa ctagaacctg tgctgattcc cttacccgat gtcaggaata atttctatca 5581 ttacaatcaa tcaaatgact ccactattaa gttgatagca atgttgtata caccacttag 5641 ggctaataat gctggggatg atgtcttcac agtttcttgc cgagttctca cgagaccatc 5701 ccccgatttt gatttcatat ttttagtgcc acccacagtt gagtcaagaa ctaaaccatt 5761 ctctgtccca gttttaactg ttgaggagat gaccaattca agattcccca ttcctttgga 5821 aaagttgttc acgggcccca gcagtgcctt tgttgttcaa ccacaaaacg gcaggtgcac 5881 gactgatggc gtgctcctag gcaccaccca actgtctcct gtcaacatct gcaccttcag 5941 aggggatgtc acccacatca caggtagtcg taactacacg atgaatttgg cttctcaaaa 6001 ttggaacaat tatgacccaa cagaagaaat cccagcccct ctagggactc cagattttgt 6061 ggggaaaatt caaggcatgc tcacccaaac cacaaggaca gatggctcaa cacgcggcca 6121 caaagctaca gtgtacactg ggagcgccga ctttgctcca aaactgggta gagttcaatt 6181 tgaaactgac acagaccatg attttgaagc taaccaaaac acaaagttca ccccagtcgg 6241 tgttatccaa gatggtagca ccacccaccg aaatgaaccc caacagtggg tgctcccaag 6301 ttactcaggc agaaatactc ataatgtgca tctggccccc gctgtagccc ccacttttcc 6361 gggtgagcaa cttctcttct tcagatccac catgcccgga tgcagcgggt accccaacat 6421 ggatttggac tgtctgctcc cccaggaatg ggtgcagtac ttctaccaag aggcagcccc 6481 agcacaatct gatgtggctc tgctaagatt tgtgaatcca gacacaggta gggttttgtt 6541 tgagtgtaag cttcataaat caggctatgt tacagtggct cacactggcc aacatgattt 6601 ggttatcccc cccaatggtt attttaggtt tgattcctgg gtcaaccagt tctacacgct 6661 tgcccccatg ggaaatggaa cggggcgtag acgtgtagta taatggctgg agctttcttt 6721 gctggattgg catctgatgt ccttggctct ggacttggtt cccttatcaa tgctggggct 6781 ggggccatca accaaaaagt tgagtttgaa aataacagaa aattgcaaca agcatccttc 6841 caatttagca gcaatctaca acaggcttcc tttcaacatg acaaagagat gctccaagca 6901 caaattgagg ccaccaaaaa gctacaacag gaaatgatga aagttaagca ggcaatgctc 6961 ctagagggtg ggttctctga gacagatgca gcccgcgggg caatcaacgc ccccatgaca 7021 aaagctttgg actggagcgg gacaaggtac tgggctcccg atgctaggac tacaacatac 7081 aatgcaggcc gcttttccac ccctcaacca tcgggggtac tgccaggaag agctaatctt 7141 agggatgctg tccctgctcg gggttcctcc agcaaatctt ctaactcttc tactgctact 7201 tctgtgtact caaatcaaac tacttcaacg agacttggtt ctacagctgg ttctggaacc 7261 agtgtctcga gcctcccgtc aactgcaagg actaggagct gggttgagga tcaaagtagg 7321 aatttgtcac ctttcatgag gggggcccac aacatatcgt ttgtcacccc accatctagc 7381 agatcctcta gccaaggcac agtctcaacc gtgcctaaag agattttgga ctcctggact 7441 ggcgctttca acacgcgcag gcagcctctc ttcgctcaca ttcgtaagcg aggggagtca 7501 cgggtgtga //