Typing tool
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Typing tool
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Complete norovirus genomes
| AB972477 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5067
ORF2: 5048..6670
ORF3: 6670..7476
LOCUS AB972477 7476 bp RNA linear VRL 08-JAN-2016
DEFINITION Norovirus Hu/GII.4/Niigata4/2012/JP RNA, complete sequence.
ACCESSION AB972477
VERSION AB972477.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/Niigata4/2012/JP
ORGANISM Norovirus Hu/GII.4/Niigata4/2012/JP
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Sato,H., Yokoyama,M. and Motomura,K.
TITLE Evidence for antigenic variation in norovirus outbreaks in Japan
between 2006 and 2012
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7476)
AUTHORS Sato,H., Nakamura,H. and Motomura,K.
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2014) Contact:Kazushi Motomura National Institute
of Infectious Diseases, Pathogen Genomics Center; Gakuen 4-7-1,
Musashi-Murayama, Tokyo 208-0011, Japan
FEATURES Location/Qualifiers
source 1..7476
/organism="Norovirus Hu/GII.4/Niigata4/2012/JP"
/mol_type="genomic RNA"
/strain="Hu/GII.4/Niigata4/2012/JP"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1518349"
/country="Japan:Niigata"
CDS 1..5067
/note="contains N-terminal, NTPase, 3A, VPg, 3Cpro and
3Dpol"
/codon_start=1
/product="polyprotein"
/protein_id="BAU24863.1"
/translation="MKMASNDASAAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARP
KQPPPKEIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPE
ETNTAFSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAIS
LAKVELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGK
LKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL
AKKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLTMTRMSDLKQALKNIA
IKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCARIRYYVKCV
QEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLKPKDDEEFVV
SSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDR
DRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRNPE
DFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHVIP
QGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLIKRPT
GELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGN
DYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPNLSTKT
KFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPNVLE
AAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLAD
QASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMIRCARAFG
GLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRDVLAAA
LEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSIAHWLL
TLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDK
TEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPFETMIP
HSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDL
STWEGDRNLAPSFVNEDGVE"
CDS 5048..6670
/codon_start=1
/product="VP1"
/protein_id="BAU24864.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDRDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6670..7476
/codon_start=1
/product="VP2"
/protein_id="BAU24865.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKTLDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSKSS
NSSTATSVYSNQTTSTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 atgaagatgg cgtctaacga cgcttccgct gccgctgttg ccaacagcaa caacgacatc
61 gcaaaatctt caagtgacgg tgtgttttct aacatggctg tcacttttaa gcgggccctc
121 ggggcgcggc ctaaacagcc gcccccgaag gaaataccac ccagaccccc gcgaccaccc
181 acaccagaat tggtcaaaaa gatccctcct cccccaccca acggggagga tgaactagtg
241 gtctcttaca gcgccaaaga tggcgtttcc ggactgcctg agctcaccac tgtcagacaa
301 ccggaagaaa ccaacacggc gttcagtgtc cccccactca accaaaggga gagcagggac
361 gccaaggagc cactaactgg aacaatcatt gaaatgtggg atggagaaat ctaccattac
421 ggcctgtacg tggaacgagg tcttatactt ggtgtgcaca agccaccggc agccattagc
481 cttgccaagg tcgagctagc accgctctct ttgttctgga gacctgtata caccccccag
541 tatctcatct ctccagacac tcttaggaga ttacatggag agtcattccc ctacactgca
601 tttgacaaca attgctacgc cttttgttgt tgggtattag acctaaacga ctcatggcta
661 agcaggagaa tgattcagag aacaacaggc ttcttcaggc cgtaccagga ttggaacagg
721 aaacccctcc ccactatgga tgattccaaa ttaaagaagg tagccaacat attcttgtgc
781 actttgtctt cactattcac cagacccatt aaggacataa tagggaagtt gaaacctctt
841 aacatcctta acattctggc tacatgtgat tggaccttcg caggcatagt ggaatcctta
901 atactcttgg cagaactctt tggagttttc tggacacccc cagatgtgtc tgcgatgatc
961 gcccccttgc taggtgatta tgaactgcaa ggacctgagg accttgcagt ggaactggtc
1021 ccaatagtga tgggggggat aggtttggtg ctaggattta ccaaagagaa aatcggaaag
1081 atgctatcat ccgctgcatc cactttaaga gcttgtaaag accttggtgc atacggactg
1141 gaaatcttaa aattggtcat gaagtggttc ttcccaaaga aagaggaagc aaatgaactg
1201 gctatggtga gatccatcga ggatgcagta ctagacctcg aggcaattga aaacaaccac
1261 atgaccaccc tactcaaaga caaagacagc ttggcaacct acatgagaac ccttgacctt
1321 gaggaggaga aagccagaaa actctcaacc aaatctgctt cacccgatat tgtgggcaca
1381 atcaactctc ttctggcaag aatcgctgct gcacgctccc tagtgcatcg ggcgaaagaa
1441 gagctctcca gcaggccgag acctgtcgtt gtgatgatat cgggaagacc agggataggg
1501 aaaactcacc ttgccaggga gctggccaag aagatcgcgg cctccctcac aggggaccag
1561 cgtgtgggtc ttatcccgcg caatggtgtc gaccactggg acgcatacaa gggcgaaaga
1621 gttgtcctat gggacgacta tggaatgagc aaccccatcc atgatgccct caggttgcag
1681 gagcttgctg acacttgccc cctcacgcta aattgtgaca gaattgagaa caaagggaaa
1741 gtctttgaca gtgatgccat aattatcacc accaatctgg ccaacccagc accactggat
1801 tatgtcaact ttgaagcgtg ctcgagacgc attgatttcc tcgtgtacgc agaagcccct
1861 gaggtggaga aggcaaagcg cgacttcccg ggtcaacctg acatgtggaa gaacgctttc
1921 agtcctgact tctcacacat aaaactgtca ttggctccac agggtggttt tgacaagaac
1981 ggcaacaccc cgcatggaaa aggggtcatg aagaccctca ccactggctc cctcatcgcc
2041 cgagcatcag ggttactcca tgagaggcta gatgaatatg aactgcaagg cccagccctc
2101 accactttca actttgaccg caacaagata cttgctttta gacagcttgc tgctgaaaac
2161 aagtatgggc tgacgatgac aagaatgtca gacctcaaac aagcacttaa gaacatcgcg
2221 atcaagaagt gccagatagt gtacaatggt ggcacctaca cacttgaggc tgatggcaag
2281 ggtagtgtga aagttgacaa agtgcaaagt gccactgtgc agaccaacaa tgaactagcc
2341 ggtgccctac accacctaag gtgcgctaga atcagatact atgttaagtg cgtccaggag
2401 gcactgtatt ccatcatcca aatcgctggg gctgcattcg tcaccacgcg catcgctaag
2461 cgcatgaaca tacagaatct ctggtccaag ccacaggtgg aagacacaga agagatggcc
2521 aacaaagatg gttgcctaaa acccaaagat gatgaagagt ttgtcgtctc atccgacgac
2581 atcaaaactg agggcaagaa agggaagaac aagtccggcc gtggcaagaa gcacacagcc
2641 ttttcaagta aagggctcag tgatgaggag tacgatgagt acaagagaat cagagaagaa
2701 aggaatggta agtactccat agaagagtac cttcaggaca gagacaggta ctacgaggag
2761 gtggccattg ccagggcaac cgaagaggac ttctgtgaag aagaagaggc caaaatccgg
2821 cagagaattt ttagaccaac aaggaaacaa cgcaaagaag agagggcctc tctcggcttg
2881 gtcacaggct ctgaaatcag gaagagaaac ccagaagact tcaaacccaa gggaaagctg
2941 tgggctgatg atgacagaag tgttgactac aatgagaaac tcaactttga ggccccacca
3001 agcatctggt cgcggatagt caactttggt tcaggctggg gcttctgggt ctcccccagt
3061 ctgtttataa catcaaccca tgtcataccc caaggtgcaa aagagttctt cggagtccct
3121 atcaagcaaa tccagataca caagtcaggt gaattctgcc ggttgaggtt cccaaagcca
3181 atcagaactg atgtgacggg catgattcta gaagaaggtg cgcccgaggg gaccgtggcc
3241 acactgctca tcaagagacc aactggagag ctcatgcctc tggcagccag aatggggacc
3301 catgcaacca tgaaaattca ggggcgcaca gttggagggc aaatgggtat gctcctgaca
3361 ggatccaacg ccaagagtat ggacctaggc acaacaccag gcgactgcgg ctgcccctac
3421 atctacaaga gggggaatga ctacgtggtc ataggagtcc atacggccgc tgcccgtgga
3481 ggaaacactg tcatatgtgc cacccagggg agtgagggag aagccacact tgaaggaggt
3541 gacagtaaag ggacatactg tggcgcacca atcttgggcc cagggagcgc tccgaatctc
3601 agtaccaaga ctaagttttg gaggtcatcc acaacaccac tcccacctgg cacctacgaa
3661 ccagcctacc tcggtggcaa agaccctaga gtcaagggtg gcccttcatt gcaacaagtt
3721 atgagggacc agctgaagcc attcacagaa cccagaggca aaccaccaag accaaatgtg
3781 ttggaagctg ccaagaaaac catcatcaat gtccttgagc aaacaattga tccaccccaa
3841 aaatggtcat ttgcgcaagc ttgcgcatcc cttgacaaaa ccacctccag cggccacccg
3901 caccacatgc ggaaaaacga ctgttggaat ggggagtcct tcacaggaaa attggctgat
3961 caagcctcca aggccaacct aatgtttgaa gagggaaaga acatgactcc agtctacaca
4021 ggtgcactta aagatgagtt ggtaaagacc gataaagttt atggtaaggt caagaagagg
4081 cttctgtggg gttcagatct ggcgaccatg atacggtgcg cccgagcttt tggaggcctt
4141 atggatgaac tcaaggcaca ctgtgtcaca cttcctgtca gagttggtat gaacatgaat
4201 gaggatggcc ccatcatctt tgagaagcac tccagatata gatatcacta tgatgctgat
4261 tattcccggt gggactcaac acaacaaagg gatgtgctag cagcagcact agaaatcatg
4321 gttaagttct ctccagaacc acacctggcc cagatagttg cagaagacct cctttcccct
4381 agcgtgatgg atgtaggtga ctttcaaata tcaataagtg agggtctccc ctctggggta
4441 ccttgtacct cccagtggaa ttccatcgcc cactggctcc tcactctgtg tgcactctct
4501 gaagtcacgg acctgtcccc tgatatcatt caggccaact cccttttctc cttctatggt
4561 gatgatgaga ttgtaagcac agacataaag ttggacccag agaagctgac agcaaaactc
4621 aaggagtacg ggctgaaacc aacccgcccc gacaaaactg aaggacccct tgttatctct
4681 gaagacctgg atggcctgac attcctccgg agaactgtga cccgtgatcc agctggctgg
4741 tttggaaaat tggaacaaag ttcaattctc aggcaaatgt actggaccag gggtcccaac
4801 catgaagatc catttgaaac aatgatacca cactcccaaa gacccataca attgatgtcc
4861 ctgctgggcg aggctgcact ccacggcccg gcattctata gcaaaattag caaattagtc
4921 attgcagagt tgaaggaagg tggcatggat ttttacgtac ccagacaaga gccaatgttc
4981 agatggatga gattctcaga tctgagcacg tgggagggcg atcgcaatct ggctcccagt
5041 tttgtgaatg aagatggcgt cgagtgacgc caacccatct gatgggtccg cagccaacct
5101 cgtcccagag gtcaacaatg aggttatggc tctggagccc gttgttggtg ccgccattgc
5161 ggcacctgta gcgggccaac aaaatgtaat tgacccctgg attagaaata attttgtaca
5221 agcccctggt ggagagttta cagtatcccc tagaaacgct ccaggtgaaa tactatggag
5281 cgcgcccttg ggccctgatc taaatcccta cctatcccat ttggccagaa tgtacaatgg
5341 ttatgcaggt ggttttgaag tgcaggtaat tctcgcgggg aacgcgttca ccgccgggaa
5401 ggtcatattt gcagcagtcc caccaaattt tccaactgaa ggcttgagcc ccagccaggt
5461 cactatgttc ccccatatag tagtagatgt taggcaacta gaacctgtgt tgattccctt
5521 acccgatgtt aggaataatt tctatcatta caatcaatca aatgacccca ccattaagtt
5581 gatagcaatg ttgtatacac cacttagggc taataatgct ggggatgatg tcttcacagt
5641 ctcttgccga gttctcacga gaccatcccc cgattttgat ttcatatttc tagtgccacc
5701 cacagttgag tcaagaacta aaccattctc tgtcccagtt ttaactgttg aggagatgac
5761 caattcaaga ttccccattc ctttggaaaa gttgttcacg ggtcccagca gtgcctttgt
5821 tgtccaacca caaaacggta ggtgcacgac tgatggcgtg ctcctaggca ccacccaact
5881 gtctcctgtc aacatctgca ccttcagagg agatgtcacc catatcacag gtagtcgtaa
5941 ctacacaatg aatttggctt ctcaaaattg gagcaattat gacccaacag aagaaatccc
6001 agcccctcta ggaactccag attttgtggg gaagattcaa ggcgtgctca cccaaaccac
6061 aaggacagat ggctcaacac gcggccacaa agccacagtg tacactggga gcgccgactt
6121 tgctccaaaa ctgggtagag ttcaatttga aactgacaca gaccgtgatt ttgaagctaa
6181 ccaaaacaca aagttcaccc cagttggtgt catccaagat ggtagcacca cccaccgaaa
6241 tgaaccccaa cagtgggtgc tcccaagtta ctcaggcaga aatactccta atgtgcatct
6301 ggcccccgct gtagccccca cttttccggg tgagcaactt ctcttcttca gatccaccat
6361 gcccggatgc agcgggtacc ccaacatgga tttggactgt ctgctccccc aggaatgggt
6421 gcagtacttc taccaagagg cagccccagc acaatctgat gtggctctgc taagatttgt
6481 gaatccagac acaggtaggg ttttgtttga gtgtaagctt cataaatcag gctatgttac
6541 agtggctcac actggccaac atgatttggt tatccccccc aatggttatt ttaggtttga
6601 ttcctgggtc aaccagtttt acacgcttgc ccccatggga aatggaacgg ggcgtagacg
6661 tgcactataa tggctggagc tttctttgct ggattggcat ctgatgtcct tggctctgga
6721 cttggttccc ttatcaatgc tggggctggg gccatcaacc aaaaagttga gtttgaaaat
6781 aacagaaaat tgcaacaagc atccttccaa tttagcagca atctacaaca ggcttccttt
6841 caacatgaca aagagatgct ccaagcacaa attgaggcca ccaaaaggct acaacaggaa
6901 atgatgaaag ttaagcaggc aatgctccta gagggtgggt tctctgagac agatgcagcc
6961 cgcggggcaa tcaacgcccc catgacaaaa actttggact ggagcgggac aaggtactgg
7021 gctcccgatg ctaggactac aacatacaat gcaggccgct tttccacccc tcaaccatcg
7081 ggggcactgc caggaagagc taatcttagg gatgctgtcc ctgctcgggg ttcctccagt
7141 aagtcttcta attcttctac tgctacttct gtgtactcaa atcaaactac ttcaacgaga
7201 cttggttcta cagctggttc tggtaccagt gtctcgagct tcccgtcaac tgcaaggact
7261 aggagctggg ttgaggatca aagtaggaat ttgtcacctt tcatgagggg ggcccacaac
7321 atatcgtttg tcaccccacc atctagcaga tcctctagcc aaggcacagt ctcaaccgtg
7381 cctaaagaga ttttggactc ctggactggc gctttcaaca cgcgcaggca gccactcttc
7441 gctcacattc gtaagcgggg ggagtcacgg gcgtaa
//