Typing tool
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Typing tool
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Complete norovirus genomes
| AB972472 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5043
ORF2: 5024..6646
ORF3: 6646..7452
LOCUS AB972472 7452 bp RNA linear VRL 08-JAN-2016
DEFINITION Norovirus Hu/GII.4/Iwate4/2012/JP RNA, complete sequence.
ACCESSION AB972472
VERSION AB972472.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/Iwate4/2012/JP
ORGANISM Norovirus Hu/GII.4/Iwate4/2012/JP
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Sato,H., Yokoyama,M. and Motomura,K.
TITLE Evidence for antigenic variation in norovirus outbreaks in Japan
between 2006 and 2012
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7452)
AUTHORS Sato,H., Nakamura,H. and Motomura,K.
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2014) Contact:Kazushi Motomura National Institute
of Infectious Diseases, Pathogen Genomics Center; Gakuen 4-7-1,
Musashi-Murayama, Tokyo 208-0011, Japan
FEATURES Location/Qualifiers
source 1..7452
/organism="Norovirus Hu/GII.4/Iwate4/2012/JP"
/mol_type="genomic RNA"
/strain="Hu/GII.4/Iwate4/2012/JP"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1518344"
/country="Japan:Iwate"
CDS 1..5043
/note="contains N-terminal, NTPase, 3A, VPg, 3Cpro and
3Dpol"
/codon_start=1
/product="polyprotein"
/protein_id="BAU24848.1"
/translation="MKMASNDASAAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARP
KQPPPKEIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPE
ETNTAFSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAIS
LAKVELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGK
LKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL
AKKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEYELQGPTLTTFNFDRNKILAFRQLAAENKYGLTMTLKNVAIKKCQIVY
NGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCARIRYYVKCVQEALYSII
QIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLKPKDDEEFVVSSDDIKTE
GKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDRYYEEVA
IARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRNPEDFKPKGKL
WADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHVIPQGAKEFFG
VPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLIKRPTGELMPLAA
RMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVH
TAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKTKFWRSSTT
PLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPNVLEAAKKTIIN
VLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASKANLM
FEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMIRCARAFGGLMDELKA
HCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRDVLAAALEIMVKFS
PEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSIAHWLLTLCALSEV
TDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVIS
EDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPFETMIPHSQRPIQL
MSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRN
LAPSFVNEDGVE"
CDS 5024..6646
/codon_start=1
/product="VP1"
/protein_id="BAU24849.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDRDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6646..7452
/codon_start=1
/product="VP2"
/protein_id="BAU24850.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPTGALPGRANLRDAVPARGSSSKSS
NSSTATSVYSNQTTSTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 atgaagatgg cgtctaacga cgcttccgct gccgctgttg ccaacagcaa caacgacatc
61 gcaaaatctt caagtgacgg tgtgttttct aacatggctg tcacttttaa gcgggccctc
121 ggggcgcggc ctaaacagcc gcccccgaag gaaataccac ccagaccccc gcgaccaccc
181 acaccagaat tggtcaaaaa gatccctcct cccccaccca acggggagga tgaactagtg
241 gtctcttaca gcgccaaaga tggcgtctcc ggactgcctg agctcaccac tgtcagacaa
301 ccggaagaaa ccaacacggc gttcagtgtc cccccactca accaaaggga gagcagggac
361 gccaaggagc cactaactgg aacaatcatt gaaatgtggg atggagaaat ctaccattac
421 ggcctgtacg tggaacgagg tcttatactt ggtgtgcaca agccaccggc agccattagc
481 cttgccaagg tcgagctagc accgctctct ttgttctgga gacctgtata caccccccag
541 tatctcatct ctccagacac tcttaggaga ttacatggag agtcattccc ctacactgca
601 tttgacaaca attgttacgc cttttgttgt tgggtattag acctaaacga ctcatggcta
661 agcaggagaa tgattcagag aacaacaggc ttcttcaggc cgtaccagga ttggaacagg
721 aaacccctcc ccactatgga tgattccaaa ttaaagaagg tagccaacat attcttgtgc
781 actttgtctt cactattcac cagacccatt aaggacataa tagggaagtt gaaacctctt
841 aacatcctca acattctggc tacatgtgat tggaccttcg caggcatagt ggaatcctta
901 atactcttgg cagaactctt tggagttttc tggacacccc cagatgtgtc tgcgatgatc
961 gcccccttgc taggtgatta tgaactgcaa ggacctgagg accttgcagt ggaactggtc
1021 ccaatagtga tgggggggat aggtttggtg ctaggattta ccaaagagaa aatcggaaag
1081 atgctatcat ccgctgcatc cactttaaga gcttgtaaag accttggtgc atacggactg
1141 gaaatcttaa aattggtcat gaagtggttc ttcccaaaga aagaggaagc aaatgaactg
1201 gctatggtga gatccatcga ggatgcagta ctagacctcg aggcaattga aaacaaccac
1261 atgaccaccc tactcaaaga caaagacagc ttggcaacct acatgagaac ccttgacctt
1321 gaggaggaga aagccagaaa actctcaacc aaatctgctt cacccgatat tgtgggcaca
1381 atcaactctc ttctggcaag aatcgctgct gcacgctccc tagtgcatcg ggcgaaagaa
1441 gagctctcca gcaggccgag acctgtcgtt gtgatgatat cgggaagacc agggataggg
1501 aaaactcacc ttgccaggga gctggccaag aagatcgcgg cctccctcac aggggaccag
1561 cgtgtgggtc ttatcccacg caatggtgtc gaccactggg acgcatacaa gggcgaaaga
1621 gttgtcctat gggacgacta tggaatgagc aaccccatcc atgatgccct caggttgcag
1681 gagcttgctg acacttgccc cctcacgcta aattgtgaca gaattgagaa caaagggaaa
1741 gtctttgaca gtgatgccat aattatcacc accaatctgg ccaacccagc accactggat
1801 tatgtcaact ttgaagcgtg ctcgagacgc attgatttcc tcgtgtacgc agaagcccct
1861 gaggtggaga aggcaaagcg cgacttccca ggtcaacctg acatgtggaa gaacgctttc
1921 agtcctgact tctcacacat aaaactgtca ttggctccac agggtggttt tgacaagaac
1981 ggcaacaccc cgcatggaaa aggggtcatg aagaccctca ccactggctc cctcatcgcc
2041 cgagcatcag ggttactcca tgagaggcta gatgaatatg aactgcaagg cccaaccctc
2101 accactttca actttgaccg caacaagata cttgctttta gacagcttgc tgctgaaaac
2161 aagtatgggc tgacgatgac actcaagaac gtcgcgatca agaagtgcca gatagtgtac
2221 aatggtggca cctacacact tgaggctgat ggcaagggta gtgtgaaagt tgacaaagtg
2281 caaagtgcca ctgtgcagac caacaatgaa ctagccggtg ccctacacca cctaaggtgc
2341 gctagaatca gatactatgt taagtgcgtc caggaggcac tgtattccat catccaaatc
2401 gctggggctg cattcgtcac cacgcgcatc gctaagcgca tgaatataca gaatctctgg
2461 tccaagccac aggtggaaga cacagaagag atggccaaca aagatggttg cctaaaaccc
2521 aaggatgatg aagagtttgt cgtctcatcc gacgacatca aaactgaggg caagaaaggg
2581 aagaacaagt ccggccgtgg caagaagcac acagcctttt caagtaaagg gctcagtgat
2641 gaggagtacg atgagtacaa gagaatcaga gaagaaagga atggtaagta ctccatagaa
2701 gagtaccttc aggacagaga caggtactac gaggaggtgg ccattgccag ggcaaccgaa
2761 gaggacttct gtgaagaaga agaggccaaa atccggcaga gaatttttag accaacaagg
2821 aaacaacgca aagaagagag ggcctctctc ggcttggtca caggctctga aatcaggaag
2881 agaaacccag aagacttcaa acccaaggga aagctgtggg ctgatgatga cagaagtgtt
2941 gactacaatg agaaactcaa ctttgaggcc ccaccaagca tctggtcgcg gatagtcaac
3001 tttggttcag gctggggctt ctgggtctcc cccagtctgt ttataacatc aacccatgtc
3061 ataccccaag gtgcaaaaga gttcttcgga gtccctatca agcaaatcca gatacacaag
3121 tcaggtgaat tctgccggtt gagattccca aagccaatca gaactgatgt gacgggcatg
3181 attctagaag aaggtgcgcc cgaggggacc gtggccacac tgctcatcaa gagaccaact
3241 ggagagctca tgcctctggc agccagaatg gggacccatg caaccatgaa aattcagggg
3301 cgcacagttg gagggcaaat gggtatgctc ctgacaggat ccaacgccaa gagtatggac
3361 ctaggcacaa caccaggcga ctgcggctgc ccctacatct acaagagggg gaatgactac
3421 gtggtcatag gagtccatac ggccgctgcc cgtggaggaa acactgtcat atgtgccacc
3481 caggggagtg agggagaagc cacacttgaa ggaggtgaca gtaaagggac atactgtggc
3541 gcaccaatct tgggcccagg gagcgctccg aagctcagta ccaagactaa gttttggaga
3601 tcatccacaa caccactccc acctggcacc tacgaaccag cctacctcgg tggcaaagac
3661 cctagagtca aaggtggccc ttcattgcaa caagttatga gggaccagct gaagccattc
3721 acagaaccca gaggcaaacc accaagacca aatgtgttgg aagctgccaa gaaaaccatc
3781 atcaatgtcc ttgagcaaac aattgatcca ccccaaaaat ggtcatttgc gcaagcttgc
3841 gcatcccttg acaaaaccac ctccagcggc cacccgcacc acatgcggaa aaacgactgt
3901 tggaatgggg agtccttcac aggaaaattg gctgatcaag cctccaaggc caacctaatg
3961 tttgaagagg gaaagaacat gactccagtc tacacaggtg cacttaaaga tgagttggta
4021 aagaccgata aagtttatgg taaggtcaag aagaggcttc tgtggggttc agatctggcg
4081 accatgatac ggtgcgcccg agcttttgga ggccttatgg atgaactcaa ggcacactgt
4141 gtcacacttc ctgtcagagt tggtatgaac atgaatgagg atggccccat catctttgag
4201 aagcactcca gatatagata tcactatgat gctgattatt cccggtggga ctcaacacaa
4261 caaagggatg tgctagcagc agcactagaa atcatggtta agttctctcc agaaccacac
4321 ctggcccaga tagttgcaga agacctcctc tcccctagcg tgatggatgt aggtgacttt
4381 caaatatcaa taagtgaggg tctcccctct ggggtacctt gtacctccca gtggaattcc
4441 atcgcccact ggctcctcac tctgtgtgca ctctctgaag tcacggacct gtcccctgat
4501 atcattcagg ccaactccct tttctccttc tatggtgatg atgagattgt aagcacagac
4561 ataaagttgg acccagagaa gctgacagca aaactcaagg agtacgggct gaaaccaacc
4621 cgccccgaca aaactgaagg accccttgtt atctctgaag acctggatgg cctgacattc
4681 ctccggagaa ctgtgacccg tgatccagct ggctggtttg gaaaattgga acaaagttca
4741 attctcaggc aaatgtactg gaccaggggt cccaaccatg aagatccatt tgaaacaatg
4801 ataccacact cccaaagacc catacaattg atgtccttgc tgggcgaggc tgcactccac
4861 ggcccggcat tctatagcaa aattagcaaa ttagtcattg cagagttgaa ggaaggtggc
4921 atggattttt acgtacccag acaagagcca atgttcagat ggatgagatt ctcagatctg
4981 agcacgtggg agggcgatcg caatctggct cccagttttg tgaatgaaga tggcgtcgag
5041 tgacgccaac ccatctgatg ggtccgcagc caacctcgtc ccagaggtca acaatgaggt
5101 catggctctg gagcccgttg ttggtgccgc cattgcggca cctgtagcgg gccaacaaaa
5161 tgtaattgac ccctggatta gaaataattt tgtacaagcc cctggtggag agtttacagt
5221 atcccctaga aacgctccag gtgaaatact atggagcgcg cccttgggcc ctgatctaaa
5281 tccctaccta tcccatttgg ccagaatgta caatggttat gcaggtggtt ttgaagtgca
5341 ggtaattctc gcggggaacg cgttcaccgc cgggaaggtc atatttgcag cagtcccacc
5401 aaattttcca actgaaggct tgagccccag ccaggtcact atgttccccc atatagtagt
5461 agatgttagg caactagaac ctgtgttgat tcccttaccc gatgttagga ataatttcta
5521 tcattacaat caatcaaatg accccaccat taagttgata gcaatgttgt atacaccact
5581 tagggctaat aatgctgggg atgatgtctt cacagtttct tgccgagtcc tcacgagacc
5641 atcccccgat tttgatttca tatttctagt gccacccaca gttgagtcaa gaactaaacc
5701 attctctgtc ccagttttaa ctgttgagga gatgaccaat tcaagattcc ccattccttt
5761 ggaaaagttg ttcacgggtc ccagcagtgc ctttgttgtc caaccacaaa acggtaggtg
5821 cacgactgat ggcgtgctcc taggcaccac ccaactatct cctgtcaaca tctgcacctt
5881 cagaggagat gtcacccata tcacaggtag tcgtaactac acaatgaatt tggcttctca
5941 aaattggagc aattatgacc caacagaaga aatcccagcc cctctaggaa ctccagattt
6001 tgtggggaag attcaaggcg tgctcaccca aaccacaagg acagatggct caacacgcgg
6061 ccacaaagcc acagtgtaca ctgggagcgc cgactttgct ccaaaactgg gtagagttca
6121 atttgaaact gacacagacc gtgattttga agctaaccaa aacacaaagt tcaccccagt
6181 tggtgtcatc caagatggta gcaccaccca ccgaaatgaa ccccaacagt gggtgctccc
6241 aagttactca ggcagaaata ctcctaatgt gcatctggcc cccgctgtag cccccacttt
6301 tccgggtgag caacttctct tcttcagatc caccatgccc ggatgcagcg ggtaccccaa
6361 catggatttg gactgtctgc tcccccagga atgggtgcag tacttctacc aagaggcagc
6421 cccagcacaa tctgatgtgg ctctgctaag atttgtgaat ccagacacag gtagggtttt
6481 gtttgagtgt aagcttcata aatcaggcta tgttacagtg gctcacactg gccaacatga
6541 tttggttatc ccccccaatg gttattttag gtttgattcc tgggtcaacc agttttacac
6601 gcttgccccc atgggaaatg gaacggggcg tagacgtgca ctgtaatggc tggagctttc
6661 tttgctggat tggcatctga tgtccttggc tctggacttg gttcccttat caatgctggg
6721 gctggggcca tcaaccaaaa agttgagttt gaaaataaca gaaaattgca acaagcatcc
6781 ttccaattta gcagcaatct acaacaggct tcctttcaac atgacaaaga gatgctccaa
6841 gcacaaattg aggccaccaa aaggctacaa caggaaatga tgaaagttaa acaggcaatg
6901 ctcctagagg gtgggttctc tgagacagat gcagcccgcg gggcaatcaa cgcccccatg
6961 acaaaagctt tggactggag cgggacaagg tactgggctc ccgatgctag gactacaaca
7021 tacaatgcag gccgcttttc cacccctcaa ccaacggggg cactgccagg aagagctaat
7081 cttagggatg ctgtccctgc tcggggttcc tccagtaagt cttctaattc ttctactgct
7141 acttctgtgt actcaaatca aactacttca acgagacttg gttctacagc tggttctggc
7201 accagtgtct cgagcttccc gtcaactgca aggactagga gctgggttga ggatcaaagt
7261 aggaatttgt cacctttcat gaggggggcc cacaacatat cgtttgtcac cccaccatct
7321 agcagatcct ctagccaagg cacagtctca accgtgccta aagagatttt ggactcctgg
7381 actggcgctt tcaacacgcg caggcagcca ctcttcgctc acattcgtaa gcgaggggag
7441 tcacgggcgt aa
//