Typing tool
|
Complete norovirus genomes
AB933767 | GII.4 New Orleans | ||
---|---|---|---|
GII.P4 New Orleans |
ORF1: 1..5100 ORF2: 5081..6703 ORF3: 6703..7509LOCUS AB933767 7509 bp RNA linear VRL 02-SEP-2015 DEFINITION Norovirus Hu/GII.4/Hokkaido3/2011/JP genomic RNA, complete genome. ACCESSION AB933767 VERSION AB933767.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/Hokkaido3/2011/JP ORGANISM Norovirus Hu/GII.4/Hokkaido3/2011/JP Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Sato,H., Yokoyama,M. and Motomura,K. TITLE Identification of strong evolutionary constraints on viral capsid protein during divergent evolution of a norovirus pandemic lineage JOURNAL Unpublished REFERENCE 2 (bases 1 to 7509) AUTHORS Sato,H., Nakamura,H. and Motomura,K. TITLE Direct Submission JOURNAL Submitted (09-MAY-2014) Contact:Kazushi Motomura National Institute of Infectious Diseases, Pathogen Genomics Center; Gakuen 4-7-1, Musashi-Murayama, Tokyo 208-0011, Japan FEATURES Location/Qualifiers source 1..7509 /organism="Norovirus Hu/GII.4/Hokkaido3/2011/JP" /mol_type="genomic RNA" /strain="Hu/GII.4/Hokkaido3/2011/JP" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1498761" /country="Japan:Hokkaido" /collection_date="2011" CDS 1..5100 /note="contains N-terminal, NTPase, 3A, VPg, 3Cpro and 3Dpol" /codon_start=1 /product="polyprotein" /protein_id="BAS30361.1" /translation="MKMASNDASAAAVANSNNDIAKSSSDGVLSSMAVTFKRALGARP KQPPPREKPQRPPRPPTPELVKNIPPPPPNGEDEIVVSYSVKDGVSGLPDLSTVRQPE ESNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS LAKVELAPLSLYWRPVYTPQYLISPDTLKKLSGETFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKIKKVANIFLCALSSLFTRPIKDIIGK IRPLNILNILASCDWSFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV AKKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSSDFSHIRLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGKQLKDVRTM PELKQALKNVSIKKCQIVYSGCTYILESDGKGNVKVDRIQSAAVQINNELAGALHHLR SARIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVGNTEETTSKDGC PKPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERTSLGLV TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG PGSAPTLSTKTKFWRSSTASLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTEP RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHVRKNDCW NGESFTGKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDL ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWD STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLR EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP NHGDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5081..6703 /codon_start=1 /product="VP1" /protein_id="BAS30362.1" /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIPGSRNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL TQTTRTNGSTRGHKATVYTGSADFSPKLGRVQFATDTDNDFETNQNTKFTPVGVIQDG STTPRNEPQQWVLPSYSGRNIHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6703..7509 /codon_start=1 /product="VP2" /protein_id="BAS30363.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEIMRVKQAMLLEGGFSETDAARGAIN APMTKTLDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRATVPARGSSSTSS NSSTATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA" ORIGIN 1 atgaagatgg cgtctaacga cgcttccgct gccgctgttg ctaacagcaa caacgacatc 61 gcaaaatctt caagtgacgg agtgctttct agcatggctg tcacttttaa acgagccctc 121 ggggcgcggc ctaaacagcc tcccccgagg gaaaaaccac aaagaccccc gcgaccacct 181 actccagaac tggtcaaaaa tattccccct cccccaccca acggagagga tgaaatagtg 241 gtttcttata gtgtcaagga tggtgtttcc ggcttgccag acctttccac cgtcaggcaa 301 ccggaagaat ctaacacggc cttcagtgtc cctccactca atcagaggga gaatagagat 361 gctaaggagc cacttactgg aacaattctg gaaatgtggg acggggaaat ctaccattat 421 ggcctgtatg tggagcgagg tcttgtacta ggtgtgcaca aaccaccagc tgccatcagc 481 ctcgctaagg ttgagctagc accactctcc ttgtactgga gacctgtgta cactcctcag 541 tacctcatct ctccagacac tctcaagaaa ttatccggag aaacgttccc ctacacagcc 601 tttgacaaca actgttatgc cttttgttgc tgggtcctgg acctaaatga ctcgtggctg 661 agcaggagaa tgatccagag aacgactggt ttcttcaggc cctatcaaga ctggaatagg 721 aaaccccttc ccactatgga tgactccaaa ataaagaagg tagctaacat attcctgtgt 781 gctctgtcct cgctgttcac cagacccata aaagatataa tagggaagat aaggcctctt 841 aacatcctca acatcttagc ctcatgtgat tggtcttttg caggcatagt ggagtccctg 901 atactcttgg cagaactctt tggagttttc tggacacccc cagatgtgtc tgcgatgatt 961 gcccccttac ttggtgacta cgagctacaa ggacctgagg accttgcagt ggagctcgtc 1021 cccgtagtga tggggggaat tggtttggtg ctaggattca ccaaagagaa gattgggaaa 1081 atgttgtcat ctgctgcgtc caccttgaga gcttgtaaag accttggtgc atatgggtta 1141 gagatcctga agttggtcat gaagtggttc ttcccaaaga aggaggaggc aaatgagctg 1201 gctatagtga ggtctatcga ggatgcagtc ctagatctcg aggcaattga aaacaaccat 1261 atgaccacct tgctcaaaga caaagacagt ctggcaacct atatgagaac acttgacctt 1321 gaggaggaga aagccaggaa actctcaacc aagtctgcct cacccgacat cgtgggcaca 1381 atcaacgccc tcctggcgag aatcgctgcc gcacgttctc tggtgcatcg agcgaaggag 1441 gagctttcca gcagaccaag acctgtggtg ttgatgatat caggcaggcc aggaatagga 1501 aagacccatc tcgctaggga agtggctaag aaaatcgcag cctcccttac aggagaccag 1561 cgtgtgggcc tcatcccacg caatggcgtc gaccattggg atgcgtacaa gggggagagg 1621 gtcgtcctat gggacgatta tggaatgagc aaccctattc acgatgccct caggctgcaa 1681 gaactcgctg acacttgccc cctcactcta aactgtgaca ggattgaaaa taaaggaaag 1741 gtctttgaca gcgatgtcat cattatcacc actaatctgg ccaacccagc accactggac 1801 tatgtcaact ttgaagcatg ctcgaggcgc atcgacttcc tcgtgtatgc agaagcccct 1861 gaagtcgaaa aggcgaagcg tgacttccca ggccagcctg acatgtggaa gaacgctttc 1921 agttctgatt tctcacacat aagactagca ctggccccac agggtggttt cgacaagaac 1981 gggaacaccc cgcacggaaa gggcgtcatg aagactctca ccactggctc ccttattgcc 2041 cgggcatcag ggctactcca tgagaggtta gatgaatttg aactacaggg cccagctctc 2101 accaccttca atttcgatcg caataaagtg cttgccttta gacagcttgc tgctgaaaat 2161 aaatatggat tgatggacac aatgagggtt gggaaacagc tcaaggatgt cagaaccatg 2221 ccagaactca aacaagcact caagaatgtc tcaatcaaga agtgccaaat agtgtatagt 2281 ggttgcacct acatacttga gtctgatggc aagggcaatg tgaaagttga cagaatccaa 2341 agcgccgccg tgcagatcaa caatgagctg gctggtgccc tgcaccattt gaggagcgcc 2401 agaatcagat actatgtcaa gtgtgtccag gaggccctgt attccatcat tcaaattgct 2461 ggggctgcat ttgtcaccac gcgcattgct aagcgcatga acatacaaaa cctatggtcc 2521 aagccacaag tgggaaacac agaggagact accagcaagg acgggtgccc aaaacctaag 2581 gatgatgagg agtttgtcat ttcatccgac gacatcaaaa ctgaaggtaa gaaagggaag 2641 aacaagactg gccgcggcaa gaagcacaca gcattttcaa gcaaaggcct cagtgatgaa 2701 gagtacgatg agtacaagag gattagagaa gaaaggaatg gcaagtactc catagaagag 2761 taccttcagg acagggacaa atactatgag gaggtggcca ttgctagggc gactgaggaa 2821 gacttctgtg aagaggagga ggccaagatc cggcaaagga tctttaggcc aacaaggaaa 2881 caacgcaagg aggaaagaac ctctctcggt ctggtcacag gctctgaaat taggaaaaga 2941 aacccagatg acttcaaacc caaggggaaa ttgtgggctg acgatgacag gagtgtggac 3001 tacaatgaga aactcagttt tgaggcccca ccaagcatct ggtcgagaat agtcaacttt 3061 ggttcaggct ggggattctg ggtctccccc agtctgttca taacatcaac ccatgtcata 3121 ccccagggcg caaaggagtt ctttggagtc cccatcaaac aaatacaggt acacaagtca 3181 ggcgagttct gtcgcttgag attcccaaaa ccaattagga ctgatgtgac aggcatgatc 3241 ttagaagaag gcgcacctga gggtaccgtg gtcacactac tcatcaaaag gtccactggg 3301 gaactcatgc ccctagcagc taggatgggg acccatgcga ccatgaagat ccaagggcgc 3361 actgttggag gccagatggg catgcttctg acaggatcca acgccaagag catggacctg 3421 ggtactacac caggtgattg tggctgcccc tatatctaca agagaggtaa tgactatgtg 3481 gtcattggag tccacacggc tgccgcacgt gggggaaaca ctgtcatatg tgccacccag 3541 gggagtgaag gagaggctac acttgaaggt ggtgacaaca aggggacata ctgtggtgca 3601 ccaatcctag gcccagggag tgccccaact cttagcacca agaccaaatt ctggagatcg 3661 tctacagcat cactcccacc tggcacctat gaaccagcct atcttggtgg caaggaccct 3721 agagtcaagg gtggcccttc actacagcaa gtcatgaggg aacagttgaa gccattcaca 3781 gagccaaggg gcaagccacc aaaaccaagt gtattagaag ctgccaagaa gaccatcatc 3841 aatgtccttg agcaaacaat tgatccacct gagaaatggt cgttcgcaca agcttgcgcg 3901 tcccttgaca agaccacttc cagtggtcat ccgcaccacg tgcggaaaaa cgactgctgg 3961 aacggggagt ccttcacagg caagctggca gaccaggctt ccaaggccaa cctgatgttt 4021 gaagaaggga agaacatgac cccagtctac acagctgcgc tcaaggatga gttagttaaa 4081 actgacaaaa tttatggtaa gatcaagaag aggcttctct ggggctcgga cttggcgacc 4141 atgatccggt gtgctcgagc attcggaggc ctaatggatg aactcaaagc acactgtgtc 4201 acgcttccca ttagagttgg catgaatatg aatgaggatg gccccatcat cttcgagagg 4261 cattccaggt acacatatca ctatgatgct gattactctc gatgggattc aacacaacag 4321 agagccgtgt tggcagcagc tctcgaaatc atggttaaat tctccccaga accacatttg 4381 gctcaggtag tcgcggaaga tcttctttct cctagcgtgg tggacgtggg cgacttcaca 4441 atatcaatca acgagggtct tccctctggg gtgccctgca cctcccaatg gaactccatc 4501 gcccactggc ttctcactct ctgtgcgctc tccgaagtca caaacctatc ccctgacacc 4561 atacaggcta actccctctt ctctttttat ggtgatgatg aaattgttag cacagacata 4621 aaattggacc cagagaaatt gacagcaaag ctcagagaat atgggttaaa accaacccgc 4681 cctgacaaaa ctgaaggacc ccttgtcatc tctgaagacc tgaatggcct aactttcctg 4741 cggagaactg tgacccgcga cccagctggt tggtttggaa aactggagca gagttcaata 4801 ctcaggcaaa tgtactggac taggggtccc aaccatggag acccatctga aacaatgatt 4861 ccacactccc aaagacccat acaattgatg tccctactgg gggaggccgc tctccacggc 4921 ccagcctttt atagcaaaat cagcaagttg gtcattgcag agctaaaaga aggtggcatg 4981 gatttttacg tgcccagaca agagccaatg ttcagatgga tgagattctc agatctgagc 5041 acgtgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgagtga 5101 cgccaaccca tctgatgggt ccacagccaa cctcgtccca gaggtcaaca atgaggttat 5161 ggctttggag cccgtagttg gtgccgccat tgcggcacct gtagcgggcc aacaaaatgt 5221 aattgacccc tggattagaa acaattttgt acaagcccct ggtggagagt ttacagtatc 5281 ccctagaaac gctccaggtg aaatattatg gagcgcgccc ttaggccctg atctgaatcc 5341 ctacctttcc catttggcca gaatgtacaa tggttatgcg ggtggttttg aagtgcaggt 5401 aatcctcgcg gggaacgcgt tcaccgccgg gaaaatcata tttgcagcag tcccaccaaa 5461 tttcccaact gaaggtttga gccccagcca ggtcactatg ttcccccata taatagtaga 5521 tgttaggcaa ttggaacctg tgttgatccc cttacccgat gttaggaata atttctacca 5581 ttataatcaa tcaaatgacc ccaccatcaa attgatagca atgttgtaca caccacttag 5641 ggctaataat gctggggacg atgtcttcac agtttcttgt cgagttctca cgagaccatc 5701 ccccgatttt gatttcatat ttttggtgcc acccacagtt gaatcaagaa ctaaaccatt 5761 ctctgtccca gttttaactg ttgaggagat gaccaattca aggtttccca ttcctttgga 5821 aaagttgttc acgggcccca gcagtgcctt tgttgttcaa ccacaaaatg gcaggtgcac 5881 gactgatggc gtgctcctag gtactaccca actgtcccct gtcaacatct gcaccttcag 5941 aggggatgtc acccatattc caggcagtcg taactacaca atgaatttgg cctcccaaaa 6001 ttggaacagt tacgatccaa cagaagaaat cccagcccct ctaggaactc cagatttcgt 6061 ggggaagatt caaggtgtgc tcacccaaac cacaaggaca aatggctcga cccgcggcca 6121 caaagctaca gtgtacactg ggagcgccga cttttctcca aaactgggta gagttcaatt 6181 tgccactgac acagacaatg attttgaaac taaccaaaac acaaagttca ccccagtcgg 6241 tgttatccag gatggtagta ccaccccccg aaatgaaccc caacaatggg tgctcccaag 6301 ttactcaggc agaaacattc ataatgtgca cctggccccc gctgtagccc ccactttccc 6361 gggcgagcag ctcctcttct tcagatctac tatgcccgga tgcagcgggt accccaacat 6421 ggatttggac tgtctgctcc cccaggaatg ggtgcagtac ttctaccagg aggcagcccc 6481 agcacaatct gatgtggctc tgttaagatt tgtgaatcca gacacaggta gggttttgtt 6541 tgagtgtaag cttcataaat caggctatgt tacagtggct cacactggcc aacatgattt 6601 ggttatcccc cccaatggtt attttagatt tgattcctgg gtcaaccagt tctacacact 6661 tgcccccatg ggaaatggga cggggcgtag acgtgcatta taatggctgg agctttcttt 6721 gctggattgg catctgacgt ccttggctct ggacttggtt ccctaatcaa tgctggggct 6781 ggggccatca accaaaaagt tgaatttgaa aataacagaa aattgcaaca agcttccttc 6841 caatttagta gcaatctaca acaagcttcc tttcaacatg acaaagagat gctccaagca 6901 caaattgagg ccaccaaaaa gttgcaacag gaaataatga gagttaaaca agcaatgctc 6961 ctagagggtg gattctctga gacagatgca gcccgtgggg caatcaacgc ccccatgaca 7021 aaaactttgg actggagcgg gacaaggtac tgggctcccg atgctaggac tacaacatat 7081 aatgcaggcc gcttttccac ccctcaaccc tcgggggcac taccaggaag agctaatctt 7141 agggctactg tccccgcccg gggttcctcc agcacgtctt ctaactcttc tactgctact 7201 tctgtgtatt caaatcaaac cacctcaacg agacttggtt ctacagctgg ttctggtacc 7261 agtgtctcga gccttccgtc aactgcaaga actaggagct gggttgagga tcaaaatagg 7321 aatttgtcac ctttcatgag gggggcccac aacatctcgt ttgtcacccc accatctagc 7381 agatcctcta gccaaggcac agtctcaacc gtgcccaaag aagttttgga ctcctggact 7441 ggcgctttca acacgcgcag gcagcctctc ttcgctcaca ttcgcaagcg aggggagtca 7501 cgggcgtaa //