Typing tool
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Typing tool
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Complete norovirus genomes
| AB933763 | GII.4 New Orleans | |
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| GII.P4 New Orleans |
ORF1: 1..5103
ORF2: 5084..6706
ORF3: 6706..7512
LOCUS AB933763 7512 bp RNA linear VRL 02-SEP-2015
DEFINITION Norovirus Hu/GII.4/Osaka2/2011/JP genomic RNA, complete genome.
ACCESSION AB933763
VERSION AB933763.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/Osaka2/2011/JP
ORGANISM Norovirus Hu/GII.4/Osaka2/2011/JP
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Sato,H., Yokoyama,M. and Motomura,K.
TITLE Identification of strong evolutionary constraints on viral capsid
protein during divergent evolution of a norovirus pandemic lineage
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7512)
AUTHORS Sato,H., Nakamura,H. and Motomura,K.
TITLE Direct Submission
JOURNAL Submitted (09-MAY-2014) Contact:Kazushi Motomura National Institute
of Infectious Diseases, Pathogen Genomics Center; Gakuen 4-7-1,
Musashi-Murayama, Tokyo 208-0011, Japan
FEATURES Location/Qualifiers
source 1..7512
/organism="Norovirus Hu/GII.4/Osaka2/2011/JP"
/mol_type="genomic RNA"
/strain="Hu/GII.4/Osaka2/2011/JP"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1498757"
/geo_loc_name="Japan:Osaka"
/collection_date="2011"
CDS 1..5103
/note="contains N-terminal, NTPase, 3A, VPg, 3Cpro and
3Dpol"
/codon_start=1
/product="polyprotein"
/protein_id="BAS30349.1"
/translation="MKMASNDASAAAVANSNNDEPQSSSDGMLSSMAVTFKRALGARP
KQPPPREKPQRPPRPPTPELVKNIPPPPPNGEDEVVVSYSVKDGVSGLPDLSTVRQPE
ESNTAFSVPPLNQRENRDAREPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LARVELAPLSLYWRPVYTPQYLISPDTLKKLSGETFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKIKKVANIFLCALSSLFTRPIKDIIGK
IRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV
AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSPDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGKQLKDVRTM
PELKQALKNVSIKKCQIVYSGCTYILESDGKGNVKVDRIQSAAVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQDLWSKPQVENTEETTSKDGC
PKPKDDDEEFVISSDDIKAEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERN
GKYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGL
VTGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVS
PSLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPE
GTVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPG
DCGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGNNKGTYCGAPIL
GPGSAPTLSTKTKFWRSSTASLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTE
PRGKPPKPNVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDC
WNGESFTGKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSD
LATMIRCARAFGGLMDELKAHCVALPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRW
DSTQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPC
TSQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKL
REYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRG
PNHGDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQ
EPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5084..6706
/codon_start=1
/product="VP1"
/protein_id="BAS30350.1"
/translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIPGSRNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTNGSTRGHKATVYTGSADFSPKLGRVQFATDTDNDFETNQNTKFTPVGVIQDG
STTPRNEPQQWVLPSYSGRNIHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6706..7512
/codon_start=1
/product="VP2"
/protein_id="BAS30351.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKTLDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRATVPARGSSSTSS
NSSIATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 atgaagatgg cgtctaacga cgcttccgct gccgctgttg ctaacagcaa caacgacgaa
61 ccgcaatctt caagtgacgg aatgctctct agcatggctg tcacttttaa acgagccctc
121 ggggcgcggc ctaaacagcc tcccccgagg gaaaaaccac aaagaccccc acgaccacct
181 actccagaac tggttaaaaa tattccccct cccccaccca acggagagga tgaagtagtg
241 gtttcttata gtgtcaaaga tggtgtttcc ggcttgcctg acctttccac cgtcaggcaa
301 ccggaagaat ctaacacggc cttcagtgtc cctccactca atcagaggga gaatagagat
361 gctagggaac cacttactgg aacaattctg gaaatgtggg acggggaaat ctaccattat
421 ggcctgtatg tggagcgggg tcttgtactg ggtgtgcaca aaccaccagc tgccatcagc
481 ctcgctaggg ttgagctagc accactctcc ttgtactgga gacctgtgta cactcctcag
541 tacctcatct ctccagacac tctcaagaaa ttatccggag aaacgttccc ctacacagcc
601 tttgacaaca actgttatgc cttttgttgc tgggtcctgg acctaaatga ctcgtggctg
661 agcaggagaa tgatccagag aacaaccggt ttcttcaggc cctaccaaga ctggaatagg
721 aaaccccttc ccactatgga tgactccaaa ataaagaagg tagctaacat attcctgtgt
781 gctctgtcct cgctgttcac cagacccata aaagatataa tagggaagat aaggcctctt
841 aacatcctca acatcttagc ctcatgtgat tggacttttg caggtatagt ggagtccctg
901 atactcttgg cagaactctt tggagttttc tggacacccc cagatgtgtc tgcgatgatt
961 gcccccttac ttggtgacta cgagctacaa ggacctgagg accttgcagt tgagctcgtc
1021 cccgtggtga tggggggaat tggtttggtg ctaggattca ccaaagagaa gattgggaaa
1081 atgttgtcat ctgctgcgtc caccttgaga gcttgtaaag accttggtgc atatgggcta
1141 gagatcctaa agttggttat gaagtggttc ttcccgaaga aggaagaggc aaatgagctg
1201 gctatagtga ggtctatcga ggatgcagtc ctggatctcg aggcaattga aaacaaccat
1261 atgaccacct tgctcaaaga caaagacagt ctggcaacct atatgagaac acttgacctt
1321 gaggaggaga aagccaggaa actctcaacc aagtctgcct cacccgacat cgtgggcaca
1381 atcaacgccc tcctggcgag aatcgctgcc gcacgttctc tagtgcaccg agcgaaggag
1441 gagctttcca gcagaccaag acctgtggtg ttgatgatat caggcaggcc aggaataggg
1501 aagacccacc tcgctaggga agtggctaag agaatcgcag cctcccttac aggagaccag
1561 cgtgtgggcc tcatcccacg caatggcgtc gaccattggg atgcgtacaa gggggagagg
1621 gtcgtcctat gggacgatta tggaatgagc aaccctatcc acgatgccct caggctgcaa
1681 gaactcgctg acacttgccc cctcactcta aactgtgaca ggatcgaaaa caaaggaaag
1741 gtctttgaca gcgatgtcat cattatcacc actaatctgg ccaacccagc gccactggac
1801 tatgtcaact ttgaagcatg ctcgaggcgc atcgacttcc tcgtgtatgc agaagcccct
1861 gaagtcgaaa aggcgaagcg tgacttccca ggccagcctg acatgtggaa gaacgctttc
1921 agtcctgatt tctcacacat aaaactagca ctggccccac agggtggttt cgacaagaac
1981 gggaacaccc cacacggaaa gggcgttatg aagactctca ccactggctc ccttattgcc
2041 cgggcatcag ggctactcca tgagaggtta gatgaatttg aactgcaggg cccagctctc
2101 accaccttca atttcgatcg caataaggtg cttgccttta gacagcttgc tgctgaaaat
2161 aaatatggat tgatggacac aatgagagtt gggaaacagc tcaaggatgt cagaaccatg
2221 ccagaactca aacaagcact caagaatgtc tcaatcaaga agtgccaaat agtgtatagt
2281 ggttgcacct acatacttga gtctgatggc aagggcaatg tgaaagttga cagaatccaa
2341 agcgccgccg tgcagaccaa caatgagctg gctggtgccc tgcaccattt gaggtgcgcc
2401 agaatcagat actatgtcaa gtgtgtccag gaggccctgt attccatcat tcaaatcgct
2461 ggggctgcat ttgtcaccac gcgcattgcc aagcgcatga acatacaaga cctatggtcc
2521 aagccacaag tggaaaacac agaggagact accagcaagg acgggtgccc aaaacctaag
2581 gacgatgatg aggagtttgt catttcatcc gacgacatca aagctgaggg taagaaaggg
2641 aagaacaaga ctggccgcgg caagaagcac acagcatttt caagcaaagg tctcagtgat
2701 gaagagtacg atgagtacaa gaggattaga gaagaaagga atggcaagta ctccatagaa
2761 gagtaccttc aggacaggga caaatactat gaggaggtgg ccattgccag ggcgactgag
2821 gaagacttct gtgaagagga ggaggccaag atccggcaaa ggatctttag gccaacaagg
2881 aaacaacgca aggaggaaag agcctctctc ggtctggtca caggctctga aattaggaaa
2941 agaaacccag atgacttcaa acccaaaggg aaattgtggg ctgacgatga caggagtgta
3001 gactacaatg agaaactcag ttttgaggcc ccaccaagca tctggtcgag aatagtcaac
3061 tttggttcag gctggggatt ttgggtctcc cccagtctgt tcataacatc aacccatgtc
3121 ataccccagg gcgcaaagga gttctttgga gtccccatca aacaaataca ggtacacaag
3181 tcgggcgagt tctgtcgctt gagattccca aaaccaatca ggactgatgt gacgggcatg
3241 atcttagaag aaggcgcacc tgagggcacc gtggtcacac tactcatcaa aaggtccact
3301 ggggaactca tgcccctagc agctaggatg gggacccatg cgaccatgaa gatccaaggg
3361 cgcactgttg gaggccagat gggcatgctt ctgacaggat ccaacgccaa gagcatggac
3421 ctgggtacca caccaggtga ttgtggctgc ccctatatct acaagagagg taatgactat
3481 gtggtcattg gggtccacac ggctgccgca cgtgggggga acactgtcat atgtgccacc
3541 caggggagtg aaggagaggc tacacttgaa ggtggtaaca acaaggggac atactgtggt
3601 gcaccaatcc taggcccagg gagtgcccca acacttagca ccaagaccaa attctggaga
3661 tcgtccacag catcactccc acctggcacc tatgaaccag cctatcttgg tggcaaggac
3721 cctagggtca agggtggccc ttcactgcag caagtcatga gggaacagtt gaagccattc
3781 acagagccca ggggcaagcc accaaaacca aatgtattag aagctgccaa gaagaccatc
3841 atcaatgtcc ttgagcaaac aattgatcca ccagagaaat ggtcgttcgc acaagcttgc
3901 gcgtcccttg acaagaccac ttccagtggt catccgcacc acatgcggaa aaacgactgc
3961 tggaacgggg agtccttcac aggcaagctg gcagaccagg cttccaaggc caacctgatg
4021 tttgaagaag ggaagaacat gaccccagtc tacacagctg cgctcaagga tgagttagtt
4081 aaaactgaca aaatttatgg taagattaag aagaggcttc tctggggctc ggacttggcg
4141 accatgatcc ggtgtgctcg agcattcgga ggcctaatgg atgaactcaa agcacactgt
4201 gtcgcacttc ctattagagt tggcatgaat atgaatgagg atggccccat catcttcgag
4261 aggcattcca ggtacacata tcactatgat gctgattact ctcgatggga ctcaacacaa
4321 cagagagccg tgttggcagc agctctagaa atcatggtta aattctcccc agaaccacac
4381 ttggctcaag tagtcgcgga ggaccttctt tctcctagcg tggtggacgt gggcgacttc
4441 acaatatcaa tcaacgaggg ccttccctct ggggtgccct gcacctccca atggaactcc
4501 atcgcccact ggcttctcac tctctgtgcg ctctctgaag tcacaaacct gtcccctgat
4561 accatacagg ctaactccct cttctctttt tatggtgatg atgaaattgt tagcacagac
4621 ataaaattgg acccagaaaa attgacagca aagctcagag aatatgggtt aaaaccaacc
4681 cgccctgaca aaactgaagg accccttgtc atctctgaag acctgaatgg cctaactttc
4741 ctgcggagaa ctgtgacccg cgacccagct ggttggtttg gaaaactgga gcagagttca
4801 atactcaggc aaatgtactg gactaggggt cccaaccatg gagacccatc tgagacaatg
4861 attccacact cccaaagacc catacaattg atgtccctac tgggggaggc cgctctccac
4921 ggcccagcat tttacagcaa aatcagcaaa ttggtcattg cagagctaaa agaaggtggc
4981 atggattttt acgtgcccag acaagagcca atgttcagat ggatgagatt ctcagatctg
5041 agcacgtggg agggcgatcg caatctggct cccagttttg tgaatgaaga tggcgtcgag
5101 tgacgccaac ccatctgatg ggtccacagc caaccttgtc ccagaggtca acaatgaggt
5161 tatggctttg gagcccgtag ttggtgccgc cattgcggca cctgtagcgg gccaacaaaa
5221 tgtaattgac ccctggatta gaaacaattt tgtacaagcc cctggtggag agtttacagt
5281 atcccctaga aacgctccag gtgaaatact atggagcgcg cccttaggcc ctgatttgaa
5341 tccctacctt tcccatttgg ccaggatgta caatggttat gcaggtggtt ttgaagtgca
5401 ggtaatcctc gcggggaacg cgttcaccgc cgggaaaatc atatttgcag cagtcccacc
5461 aaatttccca actgaaggtt tgagccccag ccaggtcact atgttccccc acataatagt
5521 agatgttagg caattggaac ctgtgttgat tcccttaccc gatgttagga ataatttcta
5581 ccattataat caatcaaatg accccaccat caaattgata gcaatgttgt acacaccact
5641 tagggctaat aatgccgggg acgatgtctt cacagtttct tgtcgagttc tcacgagacc
5701 atcccccgat tttgatttca tatttttggt gccacccaca gttgaatcaa gaactaaacc
5761 attctctgtc ccagttttaa ctgttgagga gatgaccaat tcaaggttcc ccattccttt
5821 ggaaaagttg ttcacgggcc ccagtagtgc ctttgttgtt caaccacaaa acggcaggtg
5881 cacgactgat ggcgtgctcc taggtactac ccaactgtct cccgtcaaca tctgcacctt
5941 cagaggggat gtcacccata ttccaggcag tcgtaactac acaatgaatt tggcctccca
6001 aaattggaac agttacgatc caacagaaga aatcccagcc cctctaggaa ctccagattt
6061 cgtggggaag attcaaggtg tgctcaccca aaccacaagg acaaatggct cgacccgcgg
6121 ccacaaagct acagtgtaca ctgggagcgc cgacttttct ccaaaactgg gtagagttca
6181 atttgccact gacacagaca atgattttga aactaaccaa aacacaaagt tcaccccagt
6241 cggtgttatc caggatggta gtaccacccc ccgaaatgaa ccccaacaat gggtgctccc
6301 aagttattca ggcagaaaca ttcacaatgt gcacctggcc cccgctgtag cccccacttt
6361 cccgggcgag cagctcctct tcttcagatc tactatgccc ggatgcagcg ggtaccccaa
6421 catggacttg gactgtctgc tcccccagga atgggtgcag tatttctacc aggaggcagc
6481 cccagcacaa tctgatgtgg ctctgctaag atttgtgaat ccggacacag gtagggtttt
6541 gtttgagtgt aagcttcata aatcaggcta tgttacagtg gctcacactg gccaacatga
6601 tttggttatc ccccccaatg gttattttag atttgattcc tgggtcaacc agttctacac
6661 acttgccccc atgggaaatg ggacggggcg tagacgtgca ttataatggc tggagctttc
6721 tttgctggat tggcatctga cgtccttggc tctggacttg gttccctaat caatgctggg
6781 gctggggcca tcaaccaaaa agttgaattt gaaaataaca gaaaattgca acaagcttcc
6841 ttccaattta gtagcaatct acaacaggct tcctttcaac atgacaaaga gatgctccaa
6901 gcacaaattg aggccaccaa aaagttgcaa caggaaatga tgagagttaa acaagcaatg
6961 ctcctagagg gtggattctc tgagacagat gcagcccgtg gggcaatcaa cgcccccatg
7021 acaaaaactt tggactggag cgggacaagg tactgggctc ccgatgctag gactacaaca
7081 tataatgcag gccgcttttc caccccccaa ccctcggggg cactaccagg aagagctaat
7141 cttagggcta ctgtccccgc ccggggttcc tccagcacgt cctctaactc ttctattgct
7201 acttctgtgt attcaaatca aaccacctca acgagacttg gttctacagc tggttctggt
7261 accagtgtct cgagcctccc gtcaactgca aggactagga gttgggttga ggatcaaaat
7321 aggaatttgt cacctttcat gaggggggcc cataacatct cgtttgtcac cccaccatct
7381 agcagatcct ctagccaagg cacagtctca accgtgccca aagaagtttt ggactcctgg
7441 actggcgctt tcaacacgcg caggcagcct ctcttcgctc acattcgcaa gcgaggggag
7501 tcacgggtgt aa
//