Typing tool
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Complete norovirus genomes
AB933763 | GII.4 New Orleans | ||
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GII.P4 New Orleans |
ORF1: 1..5103 ORF2: 5084..6706 ORF3: 6706..7512LOCUS AB933763 7512 bp RNA linear VRL 02-SEP-2015 DEFINITION Norovirus Hu/GII.4/Osaka2/2011/JP genomic RNA, complete genome. ACCESSION AB933763 VERSION AB933763.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/Osaka2/2011/JP ORGANISM Norovirus Hu/GII.4/Osaka2/2011/JP Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Sato,H., Yokoyama,M. and Motomura,K. TITLE Identification of strong evolutionary constraints on viral capsid protein during divergent evolution of a norovirus pandemic lineage JOURNAL Unpublished REFERENCE 2 (bases 1 to 7512) AUTHORS Sato,H., Nakamura,H. and Motomura,K. TITLE Direct Submission JOURNAL Submitted (09-MAY-2014) Contact:Kazushi Motomura National Institute of Infectious Diseases, Pathogen Genomics Center; Gakuen 4-7-1, Musashi-Murayama, Tokyo 208-0011, Japan FEATURES Location/Qualifiers source 1..7512 /organism="Norovirus Hu/GII.4/Osaka2/2011/JP" /mol_type="genomic RNA" /strain="Hu/GII.4/Osaka2/2011/JP" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1498757" /country="Japan:Osaka" /collection_date="2011" CDS 1..5103 /note="contains N-terminal, NTPase, 3A, VPg, 3Cpro and 3Dpol" /codon_start=1 /product="polyprotein" /protein_id="BAS30349.1" /translation="MKMASNDASAAAVANSNNDEPQSSSDGMLSSMAVTFKRALGARP KQPPPREKPQRPPRPPTPELVKNIPPPPPNGEDEVVVSYSVKDGVSGLPDLSTVRQPE ESNTAFSVPPLNQRENRDAREPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS LARVELAPLSLYWRPVYTPQYLISPDTLKKLSGETFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKIKKVANIFLCALSSLFTRPIKDIIGK IRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSPDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGKQLKDVRTM PELKQALKNVSIKKCQIVYSGCTYILESDGKGNVKVDRIQSAAVQTNNELAGALHHLR CARIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQDLWSKPQVENTEETTSKDGC PKPKDDDEEFVISSDDIKAEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERN GKYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGL VTGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVS PSLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPE GTVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPG DCGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGNNKGTYCGAPIL GPGSAPTLSTKTKFWRSSTASLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTE PRGKPPKPNVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDC WNGESFTGKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSD LATMIRCARAFGGLMDELKAHCVALPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRW DSTQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPC TSQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKL REYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRG PNHGDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQ EPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5084..6706 /codon_start=1 /product="VP1" /protein_id="BAS30350.1" /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIPGSRNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL TQTTRTNGSTRGHKATVYTGSADFSPKLGRVQFATDTDNDFETNQNTKFTPVGVIQDG STTPRNEPQQWVLPSYSGRNIHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6706..7512 /codon_start=1 /product="VP2" /protein_id="BAS30351.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN APMTKTLDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRATVPARGSSSTSS NSSIATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 atgaagatgg cgtctaacga cgcttccgct gccgctgttg ctaacagcaa caacgacgaa 61 ccgcaatctt caagtgacgg aatgctctct agcatggctg tcacttttaa acgagccctc 121 ggggcgcggc ctaaacagcc tcccccgagg gaaaaaccac aaagaccccc acgaccacct 181 actccagaac tggttaaaaa tattccccct cccccaccca acggagagga tgaagtagtg 241 gtttcttata gtgtcaaaga tggtgtttcc ggcttgcctg acctttccac cgtcaggcaa 301 ccggaagaat ctaacacggc cttcagtgtc cctccactca atcagaggga gaatagagat 361 gctagggaac cacttactgg aacaattctg gaaatgtggg acggggaaat ctaccattat 421 ggcctgtatg tggagcgggg tcttgtactg ggtgtgcaca aaccaccagc tgccatcagc 481 ctcgctaggg ttgagctagc accactctcc ttgtactgga gacctgtgta cactcctcag 541 tacctcatct ctccagacac tctcaagaaa ttatccggag aaacgttccc ctacacagcc 601 tttgacaaca actgttatgc cttttgttgc tgggtcctgg acctaaatga ctcgtggctg 661 agcaggagaa tgatccagag aacaaccggt ttcttcaggc cctaccaaga ctggaatagg 721 aaaccccttc ccactatgga tgactccaaa ataaagaagg tagctaacat attcctgtgt 781 gctctgtcct cgctgttcac cagacccata aaagatataa tagggaagat aaggcctctt 841 aacatcctca acatcttagc ctcatgtgat tggacttttg caggtatagt ggagtccctg 901 atactcttgg cagaactctt tggagttttc tggacacccc cagatgtgtc tgcgatgatt 961 gcccccttac ttggtgacta cgagctacaa ggacctgagg accttgcagt tgagctcgtc 1021 cccgtggtga tggggggaat tggtttggtg ctaggattca ccaaagagaa gattgggaaa 1081 atgttgtcat ctgctgcgtc caccttgaga gcttgtaaag accttggtgc atatgggcta 1141 gagatcctaa agttggttat gaagtggttc ttcccgaaga aggaagaggc aaatgagctg 1201 gctatagtga ggtctatcga ggatgcagtc ctggatctcg aggcaattga aaacaaccat 1261 atgaccacct tgctcaaaga caaagacagt ctggcaacct atatgagaac acttgacctt 1321 gaggaggaga aagccaggaa actctcaacc aagtctgcct cacccgacat cgtgggcaca 1381 atcaacgccc tcctggcgag aatcgctgcc gcacgttctc tagtgcaccg agcgaaggag 1441 gagctttcca gcagaccaag acctgtggtg ttgatgatat caggcaggcc aggaataggg 1501 aagacccacc tcgctaggga agtggctaag agaatcgcag cctcccttac aggagaccag 1561 cgtgtgggcc tcatcccacg caatggcgtc gaccattggg atgcgtacaa gggggagagg 1621 gtcgtcctat gggacgatta tggaatgagc aaccctatcc acgatgccct caggctgcaa 1681 gaactcgctg acacttgccc cctcactcta aactgtgaca ggatcgaaaa caaaggaaag 1741 gtctttgaca gcgatgtcat cattatcacc actaatctgg ccaacccagc gccactggac 1801 tatgtcaact ttgaagcatg ctcgaggcgc atcgacttcc tcgtgtatgc agaagcccct 1861 gaagtcgaaa aggcgaagcg tgacttccca ggccagcctg acatgtggaa gaacgctttc 1921 agtcctgatt tctcacacat aaaactagca ctggccccac agggtggttt cgacaagaac 1981 gggaacaccc cacacggaaa gggcgttatg aagactctca ccactggctc ccttattgcc 2041 cgggcatcag ggctactcca tgagaggtta gatgaatttg aactgcaggg cccagctctc 2101 accaccttca atttcgatcg caataaggtg cttgccttta gacagcttgc tgctgaaaat 2161 aaatatggat tgatggacac aatgagagtt gggaaacagc tcaaggatgt cagaaccatg 2221 ccagaactca aacaagcact caagaatgtc tcaatcaaga agtgccaaat agtgtatagt 2281 ggttgcacct acatacttga gtctgatggc aagggcaatg tgaaagttga cagaatccaa 2341 agcgccgccg tgcagaccaa caatgagctg gctggtgccc tgcaccattt gaggtgcgcc 2401 agaatcagat actatgtcaa gtgtgtccag gaggccctgt attccatcat tcaaatcgct 2461 ggggctgcat ttgtcaccac gcgcattgcc aagcgcatga acatacaaga cctatggtcc 2521 aagccacaag tggaaaacac agaggagact accagcaagg acgggtgccc aaaacctaag 2581 gacgatgatg aggagtttgt catttcatcc gacgacatca aagctgaggg taagaaaggg 2641 aagaacaaga ctggccgcgg caagaagcac acagcatttt caagcaaagg tctcagtgat 2701 gaagagtacg atgagtacaa gaggattaga gaagaaagga atggcaagta ctccatagaa 2761 gagtaccttc aggacaggga caaatactat gaggaggtgg ccattgccag ggcgactgag 2821 gaagacttct gtgaagagga ggaggccaag atccggcaaa ggatctttag gccaacaagg 2881 aaacaacgca aggaggaaag agcctctctc ggtctggtca caggctctga aattaggaaa 2941 agaaacccag atgacttcaa acccaaaggg aaattgtggg ctgacgatga caggagtgta 3001 gactacaatg agaaactcag ttttgaggcc ccaccaagca tctggtcgag aatagtcaac 3061 tttggttcag gctggggatt ttgggtctcc cccagtctgt tcataacatc aacccatgtc 3121 ataccccagg gcgcaaagga gttctttgga gtccccatca aacaaataca ggtacacaag 3181 tcgggcgagt tctgtcgctt gagattccca aaaccaatca ggactgatgt gacgggcatg 3241 atcttagaag aaggcgcacc tgagggcacc gtggtcacac tactcatcaa aaggtccact 3301 ggggaactca tgcccctagc agctaggatg gggacccatg cgaccatgaa gatccaaggg 3361 cgcactgttg gaggccagat gggcatgctt ctgacaggat ccaacgccaa gagcatggac 3421 ctgggtacca caccaggtga ttgtggctgc ccctatatct acaagagagg taatgactat 3481 gtggtcattg gggtccacac ggctgccgca cgtgggggga acactgtcat atgtgccacc 3541 caggggagtg aaggagaggc tacacttgaa ggtggtaaca acaaggggac atactgtggt 3601 gcaccaatcc taggcccagg gagtgcccca acacttagca ccaagaccaa attctggaga 3661 tcgtccacag catcactccc acctggcacc tatgaaccag cctatcttgg tggcaaggac 3721 cctagggtca agggtggccc ttcactgcag caagtcatga gggaacagtt gaagccattc 3781 acagagccca ggggcaagcc accaaaacca aatgtattag aagctgccaa gaagaccatc 3841 atcaatgtcc ttgagcaaac aattgatcca ccagagaaat ggtcgttcgc acaagcttgc 3901 gcgtcccttg acaagaccac ttccagtggt catccgcacc acatgcggaa aaacgactgc 3961 tggaacgggg agtccttcac aggcaagctg gcagaccagg cttccaaggc caacctgatg 4021 tttgaagaag ggaagaacat gaccccagtc tacacagctg cgctcaagga tgagttagtt 4081 aaaactgaca aaatttatgg taagattaag aagaggcttc tctggggctc ggacttggcg 4141 accatgatcc ggtgtgctcg agcattcgga ggcctaatgg atgaactcaa agcacactgt 4201 gtcgcacttc ctattagagt tggcatgaat atgaatgagg atggccccat catcttcgag 4261 aggcattcca ggtacacata tcactatgat gctgattact ctcgatggga ctcaacacaa 4321 cagagagccg tgttggcagc agctctagaa atcatggtta aattctcccc agaaccacac 4381 ttggctcaag tagtcgcgga ggaccttctt tctcctagcg tggtggacgt gggcgacttc 4441 acaatatcaa tcaacgaggg ccttccctct ggggtgccct gcacctccca atggaactcc 4501 atcgcccact ggcttctcac tctctgtgcg ctctctgaag tcacaaacct gtcccctgat 4561 accatacagg ctaactccct cttctctttt tatggtgatg atgaaattgt tagcacagac 4621 ataaaattgg acccagaaaa attgacagca aagctcagag aatatgggtt aaaaccaacc 4681 cgccctgaca aaactgaagg accccttgtc atctctgaag acctgaatgg cctaactttc 4741 ctgcggagaa ctgtgacccg cgacccagct ggttggtttg gaaaactgga gcagagttca 4801 atactcaggc aaatgtactg gactaggggt cccaaccatg gagacccatc tgagacaatg 4861 attccacact cccaaagacc catacaattg atgtccctac tgggggaggc cgctctccac 4921 ggcccagcat tttacagcaa aatcagcaaa ttggtcattg cagagctaaa agaaggtggc 4981 atggattttt acgtgcccag acaagagcca atgttcagat ggatgagatt ctcagatctg 5041 agcacgtggg agggcgatcg caatctggct cccagttttg tgaatgaaga tggcgtcgag 5101 tgacgccaac ccatctgatg ggtccacagc caaccttgtc ccagaggtca acaatgaggt 5161 tatggctttg gagcccgtag ttggtgccgc cattgcggca cctgtagcgg gccaacaaaa 5221 tgtaattgac ccctggatta gaaacaattt tgtacaagcc cctggtggag agtttacagt 5281 atcccctaga aacgctccag gtgaaatact atggagcgcg cccttaggcc ctgatttgaa 5341 tccctacctt tcccatttgg ccaggatgta caatggttat gcaggtggtt ttgaagtgca 5401 ggtaatcctc gcggggaacg cgttcaccgc cgggaaaatc atatttgcag cagtcccacc 5461 aaatttccca actgaaggtt tgagccccag ccaggtcact atgttccccc acataatagt 5521 agatgttagg caattggaac ctgtgttgat tcccttaccc gatgttagga ataatttcta 5581 ccattataat caatcaaatg accccaccat caaattgata gcaatgttgt acacaccact 5641 tagggctaat aatgccgggg acgatgtctt cacagtttct tgtcgagttc tcacgagacc 5701 atcccccgat tttgatttca tatttttggt gccacccaca gttgaatcaa gaactaaacc 5761 attctctgtc ccagttttaa ctgttgagga gatgaccaat tcaaggttcc ccattccttt 5821 ggaaaagttg ttcacgggcc ccagtagtgc ctttgttgtt caaccacaaa acggcaggtg 5881 cacgactgat ggcgtgctcc taggtactac ccaactgtct cccgtcaaca tctgcacctt 5941 cagaggggat gtcacccata ttccaggcag tcgtaactac acaatgaatt tggcctccca 6001 aaattggaac agttacgatc caacagaaga aatcccagcc cctctaggaa ctccagattt 6061 cgtggggaag attcaaggtg tgctcaccca aaccacaagg acaaatggct cgacccgcgg 6121 ccacaaagct acagtgtaca ctgggagcgc cgacttttct ccaaaactgg gtagagttca 6181 atttgccact gacacagaca atgattttga aactaaccaa aacacaaagt tcaccccagt 6241 cggtgttatc caggatggta gtaccacccc ccgaaatgaa ccccaacaat gggtgctccc 6301 aagttattca ggcagaaaca ttcacaatgt gcacctggcc cccgctgtag cccccacttt 6361 cccgggcgag cagctcctct tcttcagatc tactatgccc ggatgcagcg ggtaccccaa 6421 catggacttg gactgtctgc tcccccagga atgggtgcag tatttctacc aggaggcagc 6481 cccagcacaa tctgatgtgg ctctgctaag atttgtgaat ccggacacag gtagggtttt 6541 gtttgagtgt aagcttcata aatcaggcta tgttacagtg gctcacactg gccaacatga 6601 tttggttatc ccccccaatg gttattttag atttgattcc tgggtcaacc agttctacac 6661 acttgccccc atgggaaatg ggacggggcg tagacgtgca ttataatggc tggagctttc 6721 tttgctggat tggcatctga cgtccttggc tctggacttg gttccctaat caatgctggg 6781 gctggggcca tcaaccaaaa agttgaattt gaaaataaca gaaaattgca acaagcttcc 6841 ttccaattta gtagcaatct acaacaggct tcctttcaac atgacaaaga gatgctccaa 6901 gcacaaattg aggccaccaa aaagttgcaa caggaaatga tgagagttaa acaagcaatg 6961 ctcctagagg gtggattctc tgagacagat gcagcccgtg gggcaatcaa cgcccccatg 7021 acaaaaactt tggactggag cgggacaagg tactgggctc ccgatgctag gactacaaca 7081 tataatgcag gccgcttttc caccccccaa ccctcggggg cactaccagg aagagctaat 7141 cttagggcta ctgtccccgc ccggggttcc tccagcacgt cctctaactc ttctattgct 7201 acttctgtgt attcaaatca aaccacctca acgagacttg gttctacagc tggttctggt 7261 accagtgtct cgagcctccc gtcaactgca aggactagga gttgggttga ggatcaaaat 7321 aggaatttgt cacctttcat gaggggggcc cataacatct cgtttgtcac cccaccatct 7381 agcagatcct ctagccaagg cacagtctca accgtgccca aagaagtttt ggactcctgg 7441 actggcgctt tcaacacgcg caggcagcct ctcttcgctc acattcgcaa gcgaggggag 7501 tcacgggtgt aa //