Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| AB933761 | GII.4 New Orleans | |
|
|---|---|---|---|
| GII.P4 New Orleans |
ORF1: 1..5103
ORF2: 5084..6706
ORF3: 6706..7512
LOCUS AB933761 7512 bp RNA linear VRL 02-SEP-2015
DEFINITION Norovirus Hu/GII.4/Osaka4/2011/JP genomic RNA, complete genome.
ACCESSION AB933761
VERSION AB933761.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/Osaka4/2011/JP
ORGANISM Norovirus Hu/GII.4/Osaka4/2011/JP
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Sato,H., Yokoyama,M. and Motomura,K.
TITLE Identification of strong evolutionary constraints on viral capsid
protein during divergent evolution of a norovirus pandemic lineage
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7512)
AUTHORS Sato,H., Nakamura,H. and Motomura,K.
TITLE Direct Submission
JOURNAL Submitted (09-MAY-2014) Contact:Kazushi Motomura National Institute
of Infectious Diseases, Pathogen Genomics Center; Gakuen 4-7-1,
Musashi-Murayama, Tokyo 208-0011, Japan
FEATURES Location/Qualifiers
source 1..7512
/organism="Norovirus Hu/GII.4/Osaka4/2011/JP"
/mol_type="genomic RNA"
/strain="Hu/GII.4/Osaka4/2011/JP"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1498755"
/country="Japan:Osaka"
/collection_date="2011"
CDS 1..5103
/note="contains N-terminal, NTPase, 3A, VPg, 3Cpro and
3Dpol"
/codon_start=1
/product="polyprotein"
/protein_id="BAS30343.1"
/translation="MKMASNDASAAAVANSNNDDAQSSSDGMLSSMAVTFKRALGARP
KQPPPREKPQRPPRPPTPELVKNIPPPPPNGKDEIGVSYSVKDGVSGLPDLSTVRQPE
ESNTAFSVPPLNQRESKDAKEPLTGTILEMGDGEIYHYGLYVERGLVLGVHKPPVAIS
LAKVELTPLSLYWRPVYTPQYLISPDTLKKLSGETFPYTAFDNNCYAFCCWVLDLNDS
WLNVRRMIQRTTGFFRPYQDWNRKPLPTMDDSKIKKVANIFLCALSSLFTRPIKDIIG
KIRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPE
DLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFF
PKKEEANELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLS
TKSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLARE
VAKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADT
CPLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVE
KAKRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIAR
ASGLLHERLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGKQLKDVRT
MPELKQALKNVSIKKCQIVYSGCTYILESDGKGNVRVDRIQSAAVQTNNELAGALHHL
RCARIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQDLWSKPQVENTEETTSKDG
CPKPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERN
GKYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGL
ITGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVS
PSLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPE
GTVVTLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPG
DCGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPIL
GPGSAPTLSTKTKFWRSSTASLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTE
PRGKPPKPSVLEAAKETIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDC
WNGESFTGKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSD
LATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRW
DSTQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPC
TSQWNSIAHWLLTLCALSEITNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKL
REYGLKPTRPDKTEGPLVISGDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRG
PNHGDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQ
EPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5084..6706
/codon_start=1
/product="VP1"
/protein_id="BAS30344.1"
/translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRINFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIPGSRNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTNGSTRGHKATVYTGSADFSPKLGRVQFATDTDNDFETNQNTKFTPVGVIQDG
STTPRNEPQQWVLPSYSGRNIHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6706..7512
/codon_start=1
/product="VP2"
/protein_id="BAS30345.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKTLDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRATVPARGSSSMSS
NSSTATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 atgaagatgg cgtctaacga cgcttccgct gccgctgttg ctaacagcaa caacgacgac
61 gcgcaatctt caagtgacgg aatgctctct agcatggctg tcacttttaa acgagccctc
121 ggggcgcggc ctaaacagcc tcccccgagg gaaaaaccac aaagaccccc acgaccacct
181 actccagaac tggttaaaaa tattcccccc ccccccccca acggaaagga tgaaataggg
241 gtttcttata gtgtcaaaga tggggtttcc ggtttgcctg acctttccac cgtcaggcaa
301 ccggaagaat ctaacacggc cttcagtgtc cctccactca atcagaggga gagtaaagat
361 gctaaggagc cacttactgg aacaattctg gaaatggggg acggggaaat ctaccattat
421 ggcctgtatg tggagcgagg tcttgtacta ggggtgcaca aaccaccagt tgccatcagc
481 ctcgctaagg ttgagctaac accactctcc ttgtactgga gacctgtgta cactcctcag
541 tacctcatct ctccagacac tctcaagaaa ttatccggag aaacgttccc ctacacagcc
601 tttgacaaca actgttatgc cttttgttgc tgggtcctgg acctaaatga ctcgtggctg
661 aatgtcagga gaatgatcca gagaacaact ggtttcttca ggccctacca agactggaat
721 aggaaacccc tccccactat ggatgactcc aaaataaaga aggtagctaa catattcctg
781 tgtgctctgt cctcgctgtt caccagaccc ataaaagata taatagggaa gataaggcct
841 cttaacatcc tcaacatctt agcctcatgt gattggactt ttgcaggcat agtggagtcc
901 ctgatactct tggcagaact ctttggagtt ttctggacac ccccagatgt gtctgcgatg
961 attgccccct tacttggtga ctatgagcta caaggacctg aggaccttgc agtggagctc
1021 gtccccgtgg tgatgggggg aattggtttg gtgctaggat tcaccaaaga gaagattggg
1081 aaaatgttgt catctgctgc gtccaccttg agagcttgta aagaccttgg tgcatatggg
1141 ctagagatcc taaagttggt catgaagtgg ttcttcccga agaaggagga ggcaaatgag
1201 ctggctatag tgaggtctat cgaggatgca gttctggatc tcgaggcaat tgaaaacaac
1261 catatgacca ccttgcttaa agacaaagac agtctggcaa cctatatgag aacacttgac
1321 cttgaggagg agaaagccag gaaactctca accaagtctg cctcacccga catcgtgggc
1381 acaatcaacg ccctcctggc aagaatcgcc gccgcacgtt ctctggtgca tcgagcgaag
1441 gaggagcttt ccagcagacc aagacctgtg gtgttgatga tatcaggcag gccaggaata
1501 gggaagaccc acctcgctag ggaagtggct aagagaatcg cagcctcact tacaggagac
1561 cagcgtgtgg gcctcatccc acgcaatggc gtcgaccatt gggatgcgta caagggggag
1621 agggtcgtcc tatgggacga ttatggaatg agcaacccta ttcacgacgc cctcaggctg
1681 caagaactcg ctgacacttg ccccctcact ctaaactgtg acaggattga aaataaagga
1741 aaggtctttg acagcgatgt catcattatc accactaatc tggccaaccc agcaccactg
1801 gactatgtca actttgaagc atgctcgagg cgcatcgact tcctcgtgta tgcggaagcc
1861 cctgaagtcg aaaaggcgaa gcgtgacttc ccaggccagc ctgacatgtg gaagaacgct
1921 ttcagttctg atttctcaca cataaaacta gcactggccc cacagggtgg tttcgacaag
1981 aacgggaaca ccccacacgg aaagggcgtc atgaagactc tcaccactgg ctcccttatt
2041 gcccgggcat cagggctact ccatgagagg ttagatgaat ttgaactaca gggcccagct
2101 ctcaccacct tcaatttcga tcgcaataaa gtgcttgcct ttagacagct tgctgctgaa
2161 aataaatatg gattgatgga cacaatgaga gttgggaaac agctcaagga tgtcagaacc
2221 atgccagaac tcaaacaagc actcaagaat gtctcaatca agaagtgtca aatagtgtat
2281 agtggttgca cctacatact tgagtctgat ggcaagggca atgtgagagt tgacagaatc
2341 caaagcgccg ccgtgcagac caacaatgag ctggctggtg ccctgcacca tttgaggtgc
2401 gccagaatca gatactatgt caagtgtgtc caggaggccc tgtattccat cattcaaatt
2461 gctggggctg catttgtcac cacgcgcatt gccaagcgca tgaacataca agacctatgg
2521 tccaagccac aagtggaaaa tacagaggag actaccagca aggacgggtg cccaaaacct
2581 aaggatgatg aggagtttgt catttcatcc gacgacatca aaactgaggg taagaaaggg
2641 aagaacaaga ctggccgcgg caagaagcac acagcatttt caagcaaagg cctcagtgat
2701 gaagagtacg atgagtacaa gaggattaga gaagaaagga atggcaagta ctccatagaa
2761 gagtaccttc aggacaggga caaatactat gaagaggtgg ccattgccag ggcgactgag
2821 gaagacttct gtgaagagga ggaggccaag atccggcaaa ggatctttag gccaacaagg
2881 aaacaacgca aggaggaaag agcctctctc ggtctgatca caggttctga aattaggaaa
2941 agaaacccag atgacttcaa acccaaaggg aaattgtggg ctgacgatga caggagtgtg
3001 gactacaatg agaaactcag ttttgaggcc ccaccaagca tctggtcgag aatagtcaac
3061 tttggttcag gctggggatt ctgggtctcc cccagtctgt tcataacatc aacccatgtc
3121 ataccccagg gcgcaaagga gttctttgga gtccccatca aacaaataca agtacacaag
3181 tcaggcgagt tctgtcgctt gagattccca aaaccaatca ggactgatgt gacgggcatg
3241 atcttagaag aaggcgcacc tgagggcacc gtggtcacac tactcatcaa aaggcccact
3301 ggggaactca tgcccctagc agctaggatg gggacccatg cgaccatgaa gatccaaggg
3361 cgcactgttg gaggccagat gggcatgctt ctgacaggat ccaacgccaa gagcatggac
3421 ctgggtacta caccaggtga ttgtggctgc ccctacatct acaagagagg taatgactat
3481 gtggtcattg gagtccacac ggctgccgca cgtgggggaa acactgtcat atgtgccacc
3541 caggggagtg aaggagaggc tacacttgaa ggtggtgaca acaaggggac atactgtggt
3601 gcaccaatcc taggcccagg gagtgcccca acacttagca ccaagaccaa attctggaga
3661 tcgtccacag catcactccc acctggcacc tatgaaccag cctatcttgg tggtaaggat
3721 cctagagtca agggtggccc ttcactgcag caagtcatga gggaacagtt gaagccattt
3781 acagagccca ggggcaagcc accaaagcca agtgtattag aagctgctaa ggagaccatc
3841 atcaatgtcc ttgagcaaac aattgatcca cctgagaaat ggtcgttcgc acaagcttgc
3901 gcgtcccttg acaagaccac ttccagtggt cacccgcacc acatgcggaa aaacgactgc
3961 tggaacgggg agtccttcac aggcaagctg gcagaccagg cttccaaggc caacctgatg
4021 tttgaagaag ggaagaacat gaccccagtc tacacagctg cgctcaagga tgagttggtt
4081 aaaactgaca aaatttatgg taagatcaag aaaaggcttc tctggggctc ggacttggcg
4141 accatgatcc ggtgtgctcg agcattcgga ggcctaatgg atgaactcaa agcacactgt
4201 gtcacacttc ccattagagt tggcatgaat atgaatgagg atggccccat catcttcgag
4261 aggcattcca ggtacacata tcactatgat gctgattact ctcgatggga ttcaacacaa
4321 cagagagccg tgttggcagc agctctagaa atcatggtta aattttcccc agaaccacat
4381 ttggctcagg tagtcgcgga agaccttctt tctcctagcg tggtggacgt gggcgacttc
4441 acaatatcaa tcaatgaggg tcttccctct ggggtgccct gcacctccca atggaactcc
4501 atcgcccact ggcttctcac tctctgtgcg ctctctgaaa tcacaaacct gtcccctgat
4561 accatacagg ctaactccct cttctctttt tatggtgatg atgaaattgt tagcacagat
4621 ataaaattgg acccagagaa attgacagca aagctcagag aatatgggtt gaaaccaacc
4681 cgccctgaca aaactgaagg accccttgtc atctctggag acctgaatgg cctaactttc
4741 ctgcggagaa ctgtgacccg cgacccagct ggttggtttg gaaaactgga gcagagttca
4801 atactcaggc aaatgtactg gactaggggt cccaaccatg gagacccttc tgaaacaatg
4861 attccacact cccaaagacc catacaattg atgtccctac tgggggaggc cgctctccac
4921 ggcccagcat tttacagcaa aatcagcaaa ttggtcattg cagagctaaa agaaggtggc
4981 atggattttt acgtgcccag acaagagcca atgttcagat ggatgagatt ctcagatctg
5041 agcacgtggg agggcgatcg caatctggct cccagttttg tgaatgaaga tggcgtcgag
5101 tgacgccaac ccatctgatg ggtccacagc caacctcgtc ccagaggtca acaatgaggt
5161 tatggctttg gagcccgtag ttggtgccgc cattgcggca cctgtagcgg gccaacaaaa
5221 tgtaattgac ccctggatta gaatcaattt tgtacaagcc cctggtggag agtttacagt
5281 atcccctaga aacgctccag gtgaaatctt atggagcgcg cccttaggcc ctgatttgaa
5341 tccctacctt tctcatttgg ccagaatgta caatggttat gcaggtggtt ttgaagtgca
5401 ggtaatcctc gcggggaacg cgttcaccgc cgggaaaatc atatttgcag cagtcccacc
5461 aaatttccca actgaaggtt tgagccccag ccaggtcact atgttccccc atataatagt
5521 agatgttagg caattggaac ctgtgttgat ccccttaccc gatgttagga ataatttcta
5581 ccattataat caatcaaatg accccaccat caaattgata gcaatgttgt acacaccact
5641 tagggctaat aatgccgggg atgatgtctt cacagtttct tgtcgagttc ttacgagacc
5701 atcccccgat tttgatttca tatttttggt gccacccaca gttgaatcaa gaactaaacc
5761 attctctgtc ccagttttaa ctgttgagga gatgaccaat tcaaggttcc ccattccttt
5821 ggaaaagttg ttcacgggcc ccagtagtgc ctttgttgtt caaccacaaa acggcaggtg
5881 cacgactgat ggcgtgctcc taggtactac ccaactgtct cctgtcaaca tctgcacctt
5941 cagaggggat gtcacccata ttccaggcag tcgtaactac acaatgaatt tggcctccca
6001 aaattggaac agttacgatc caacagaaga aatcccagcc cctctaggaa ctccagattt
6061 cgtggggaag attcaaggtg tgctcaccca aaccacaagg acaaatggct cgacccgcgg
6121 ccacaaagct acagtgtaca ctggaagcgc cgacttttct ccaaaactgg gtagagttca
6181 atttgccact gacacagaca atgattttga aactaaccaa aacacaaagt tcaccccagt
6241 cggtgttatc caggatggta gtactacccc ccgaaatgaa ccccaacaat gggtgctacc
6301 aagttactca ggcagaaaca ttcataatgt gcacctggcc cccgctgtag cccccacttt
6361 cccgggcgag cagctcctct tcttcagatc tactatgccc ggatgcagcg ggtaccccaa
6421 catggatttg gactgtctgc tcccccagga atgggtgcag tacttctacc aggaggcagc
6481 cccagcacaa tctgatgtgg ctctgttaag atttgtgaat ccagacacag gtagggtttt
6541 gtttgagtgt aagcttcata aatcaggcta tgttacagtg gctcacactg gccaacatga
6601 tttggttatc ccccccaatg gttattttag atttgattcc tgggtcaacc agttctacac
6661 acttgccccc atgggaaatg ggacggggcg tagacgtgca ttataatggc tggagctttc
6721 tttgctggat tggcatctga cgtccttggc tctggacttg gttccctaat caatgctggg
6781 gctggggcca tcaaccaaaa agttgaattt gaaaataaca gaaaattgca acaagcttcc
6841 ttccaattta gtagcaatct acaacaggct tcctttcaac atgacaaaga gatgctccaa
6901 gcacaaattg aggccaccaa aaagttgcaa caggaaatga tgagagttaa acaagcaatg
6961 ctcctagagg gtggattctc tgagacagat gcagcccgtg gggcaatcaa cgcccccatg
7021 acaaaaactt tggactggag cgggacaagg tactgggctc ccgatgccag gactacaaca
7081 tataatgcag gccgcttttc cacccctcaa ccctcggggg cattaccagg aagagctaat
7141 cttagggcta ctgtccccgc ccggggttcc tccagcatgt cttctaactc ttctactgct
7201 acttctgtgt attcaaatca aaccacctca acgagacttg gttctacagc tggttctggt
7261 accagtgtct cgagcctccc gtcaactgca aggactagga gctgggttga ggatcaaaat
7321 aggaatttgt cacctttcat gaggggggcc cacaacatct cgtttgtcac cccaccatct
7381 agcagatcct ctagccaagg cacagtctca accgtgccca aagaagtttt ggactcctgg
7441 actggcgctt tcaacacgcg taggcagcct ctcttcgctc acattcgcaa gcgaggggag
7501 tcacgggtgt aa
//