Typing tool
|
Complete norovirus genomes
AB933759 | GII.4 New Orleans | ||
---|---|---|---|
GII.P4 Hunter |
ORF1: 1..5100 ORF2: 5081..6703 ORF3: 6703..7509LOCUS AB933759 7509 bp RNA linear VRL 02-SEP-2015 DEFINITION Norovirus Hu/GII.4/Nagano26/2011/JP genomic RNA, complete genome. ACCESSION AB933759 VERSION AB933759.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/Nagano26/2011/JP ORGANISM Norovirus Hu/GII.4/Nagano26/2011/JP Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Sato,H., Yokoyama,M. and Motomura,K. TITLE Identification of strong evolutionary constraints on viral capsid protein during divergent evolution of a norovirus pandemic lineage JOURNAL Unpublished REFERENCE 2 (bases 1 to 7509) AUTHORS Sato,H., Nakamura,H. and Motomura,K. TITLE Direct Submission JOURNAL Submitted (09-MAY-2014) Contact:Kazushi Motomura National Institute of Infectious Diseases, Pathogen Genomics Center; Gakuen 4-7-1, Musashi-Murayama, Tokyo 208-0011, Japan FEATURES Location/Qualifiers source 1..7509 /organism="Norovirus Hu/GII.4/Nagano26/2011/JP" /mol_type="genomic RNA" /strain="Hu/GII.4/Nagano26/2011/JP" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1498753" /country="Japan:Nagano" /collection_date="2011" CDS 1..5100 /note="contains N-terminal, NTPase, 3A, VPg, 3Cpro and 3Dpol" /codon_start=1 /product="polyprotein" /protein_id="BAS30337.1" /translation="MKMASNDASAAAVADSNNDTVKSSSDGVLSSMAVTFKRALGARP KQPPPREIPQRPPRPPTPELIKNIPPPPPNGEDDIVVSYSVKDGVSGLPDLSTVRQPE ESNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS FARVELTPLSLYWRPVYTPQYLISPDALKRLHGETFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV AKRIAASLTGDQRVGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSSDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEFELQGPTLTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVRTM PELKQALKNISIKKCQIVYSGSTYTLESDGKGNVKVDRVQSASVQTNNELAGALHHLR CARIRYYVRCVQEALYSIIQIAGAAFVTTRIVKRMNIQSLWSKPQVENTEETTSKDGC QNPKDDEVFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHTRKNDCW NGESFTGKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDL ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWD STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLR EYGLKPTRPDKTEGPLAISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGS NHEDPFETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAEPKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5081..6703 /codon_start=1 /product="VP1" /protein_id="BAS30338.1" /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHITGSRNYTMNLATQNWNSYDPTEEIPAPLGTPDFVGKIQGVL TQTTRADGSTRGHKATVYTGSADFAPKLGRVQFATDTDNDFDANQNTKFTPVGVIQDG DTAHRNEPQQWVLPSYSGRNSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6703..7509 /codon_start=1 /product="VP2" /protein_id="BAS30339.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGHFSIPQPSGALPGRANLRAAVPARGSSNTPS NSSTATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARARSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA" ORIGIN 1 atgaagatgg cgtctaacga cgcttccgct gccgctgttg ctgatagcaa caacgacacc 61 gtaaaatctt caagtgacgg agtgctttct agcatggctg tcactttcaa acgagccctc 121 ggggcgcggc ctaaacagcc tcccccgagg gaaataccac aaagaccccc acgaccaccc 181 actccagaac tgatcaaaaa tatcccccct cccccaccca acggagagga tgacatagtg 241 gtttcttata gtgtcaaaga tggcgtctct ggtttgcctg atctttccac cgtcaggcaa 301 ccggaagaat ctaatacggc cttcagtgtc cctccactca atcagaggga gaatagagat 361 gctaaggaac cactgactgg aacaattttg gaaatgtggg atggagaaat ctatcattat 421 ggcctgtatg tagagcgagg tcttgtgcta ggtgtgcaca aaccaccagc tgccatcagc 481 ttcgctaggg tcgaactaac accactttcc ttgtactgga gacctgtgta tactccccag 541 tacctcatct ctccagacgc tctcaagaga ctacacggag agacgttccc ctacacagct 601 tttgacaaca actgctacgc cttttgttgt tgggtcctgg acctaaacga ctcgtggctg 661 agtaggagaa tgatccagag aacaactggc ttcttcagac cctaccaaga ttggaatagg 721 aaacccctcc ccactatgga tgactccaag ttaaagaagg tagctaacat attcctgtgt 781 gcactgtctt cgctattcac caggcctata aaagatataa tagggaagct aaggcctctt 841 aacatcctta acatcttggc ctcatgtgat tggacttttg caggcatagt ggagtccttg 901 atactcttgg cagaactctt tggagttttc tggacacccc cagatgtgtc tgcgatgatt 961 gcccccttac tcggtgacta cgagctacag ggacctgagg accttgcagt ggagctcgtc 1021 cctgtagtga tggggggaat tggtttggtg ctaggattca ccaaagagaa gattggaaaa 1081 atgttgtcat ctgctgcatc caccttgaga gcttgtaaag atcttggtgc atatgggcta 1141 gagatcctaa agttggttat gaagtggttc ttcccgaaga aagaggaagc aaatgaactg 1201 gctatagtga gatccatcga ggatgcagtc ctggatctcg aagcaattga aaacaaccat 1261 atgaccacct tgctcaaaga caaagacagt ctggcaacct acatgagaac ccttgacctt 1321 gaggaggaga aagccaggaa actctcgacc aagtctgctt cacctgacat cgtgggcaca 1381 atcaacgccc ttctggcgag aatcgctgct gcacgctctc tggtgcatcg agcgaaggag 1441 gaactttcta gcagaccaag acctgtagtg ttgatgatat caggcagacc aggaataggg 1501 aagacccacc ttgccaggga agtggctaag agaatcgcag cctcccttac aggagaccag 1561 cgtgtaggcc tcgtcccacg caatggcgtc gaccattggg atgcgtacaa gggggagagg 1621 gtcgttctat gggacgacta tggaatgagc aatcctatcc acgatgccct cagattgcaa 1681 gaactcgctg acacttgtcc cctcacccta aactgtgaca ggattgagaa caaaggaaag 1741 gtctttgaca gcgatgtcat cattatcacc actaatttgg ctaacccagc accactggac 1801 tatgtcaact tcgaagcatg ctcgaggcgc atcgacttcc tcgtgtatgc agaagcccct 1861 gaggtcgaaa aggcgaagcg tgacttccca ggccaacccg acatgtggaa gaacgccttc 1921 agttctgatt tctcacacat aaaactaaca ttggctccac agggtggttt cgacaagaac 1981 gggaacaccc cacacgggaa gggcgtcatg aagactctca ccaccggctc ccttattgcc 2041 cgggcatcag ggctactcca tgaaagacta gatgaatttg aactacaggg cccaactctc 2101 accactttca actttgatcg caataaagtg cttgccttta gacaacttgc tgctgaaaat 2161 aaatatgggt tgatggacac aatgaaagtt gggaggcagc tcaaggatgt cagaacaatg 2221 ccagagctca agcaagcact caagaatatt tcaatcaaga agtgccaaat agtgtatagt 2281 ggtagcacct acacacttga gtctgatggc aagggtaatg tgaaggttga cagagttcaa 2341 agcgcctccg tgcagaccaa caatgagctg gctggcgccc tacaccatct aaggtgcgcc 2401 agaataagat actatgtcag gtgtgtccag gaggccctgt attccatcat ccagattgct 2461 ggggctgcat ttgtcaccac gcgcatcgtc aagcgcatga acatacaaag cctatggtct 2521 aagccacaag tggaaaatac agaggagact accagcaagg acgggtgcca aaaccccaaa 2581 gatgatgagg tgttcgtcat ttcatctgac gacatcaaaa ctgagggcaa gaaagggaaa 2641 aacaagactg gccgcggtaa gaagcacaca gccttctcaa gcaaaggtct cagtgatgaa 2701 gagtacgacg agtacaagag gattagagaa gaaaggaatg gtaagtactc catagaagag 2761 taccttcagg acagggacaa atactatgag gaggtggcca ttgccagggc gactgaggaa 2821 gacttctgtg aagaggagga ggccaagatc cggcaaagga tcttcaggcc aacaaggaaa 2881 caacgcaagg aggaaagagc ttctctcggt ttagtcacag gttctgaaat taggaaaaga 2941 aatccagatg atttcaaacc caaggggaaa ctgtgggctg acgatgacag aagtgtggac 3001 tacaatgaga aactcagttt tgaagcccca ccaagcatct ggtcgaggat agtcaacttt 3061 ggttcaggtt ggggattctg ggtctccccc agtttgttca taacatcaac ccatgtcata 3121 ccccaaggag caaaggagtt ctttggagtc cccatcaaac aaattcaggt acataagtca 3181 ggcgaattct gtcgcttgag attcccaaaa ccaatcagga ctgatgtgac gggcatgatc 3241 ttagaagaag gtgcacccga gggaaccgtg gttacactac tcatcaaaag atccactggg 3301 gagctcatgc ccctggcagc taggatgggg acccatgcaa ccatgaaaat ccaagggcgc 3361 actgttggag gtcaaatggg catgcttctg acaggatcca acgccaaaag catggatctg 3421 ggtaccacac caggtgattg tggctgtccc tacatctaca agagaggaaa tgactatgtg 3481 gtcattggag tccacacggc tgccgctcgt gggggcaaca ctgtcatatg tgccacccag 3541 gggagtgagg gagaggctac acttgaaggt ggtgacaata aagggacata ctgtggtgca 3601 ccaatcctag gcccagggag tgccccaaaa cttagcacca agaccaaatt ctggagatcg 3661 tccacagcac cactcccacc tggcacctat gaaccagctt atcttggtgg taaggatccc 3721 agagtcaagg gtgggccttc actacagcag gtcatgaggg atcagctgaa gccattcaca 3781 gagcccaggg gcaagccacc aaagccaagt gtgttggaag ctgctaagaa aaccatcatc 3841 aatgtccttg agcaaacaat tgatccacct gagaaatggt cgttcgcaca agcttgcgcg 3901 tcccttgata agaccacctc cagtggccat ccgcatcaca cgcggaaaaa cgactgctgg 3961 aacggggagt ccttcacagg caagctggca gaccaggctt ccaaggccaa cctgatgttt 4021 gaagaaggga agaacatgac gccagtctac acagctgcgc ttaaggatga attagttaaa 4081 actgacaaaa tttatggcaa gatcaagaag aggcttctct ggggctcgga tttggcgacc 4141 atgatccggt gtgctcgagc attcggaggc ctaatggatg aactcaaagc gcactgtgtc 4201 acacttccca ttagagttgg tatgaatatg aatgaggatg gccccatcat cttcgagagg 4261 cactccaggt acacgtacca ctatgatgct gattactctc gatgggattc aacacaacag 4321 agagccgtgt tggcagcagc tctagaaatc atggttaagt tctccccaga accacatttg 4381 gcccaggtag tcgcagaaga ccttctttct cctagcgtgg tggacgtggg tgatttcaca 4441 atatcaatta acgagggcct tccttctggg gtgccctgca cctcccaatg gaactccatc 4501 gcccactggc ttctcaccct ctgtgcgctc tctgaagtta caaacttgtc tcctgacacc 4561 atacaagcta actccctctt ctctttttat ggtgatgatg aaattgttag cacagacata 4621 aaattggacc cagaaaagtt gacagcaaag ctcagggaat atgggttaaa accaacccgc 4681 cccgacaaga ctgaaggacc ccttgccatc tctgaagact tgaatggcct gactttcttg 4741 cggagaactg tgacccgcga cccagctggt tggtttggaa aactggagca gagttcaata 4801 ctcaggcaaa tgtactggac taggggttcc aaccatgaag acccatttga aacaatgatt 4861 ccacactccc aaagacccat acaattgatg tccctactgg gggaggccgc actccacggc 4921 ccagcattct acagcaaaat cagcaagtta gtcattgcag aacctaaaga aggtggcatg 4981 gatttttacg tgcccagaca agagccaatg ttcagatgga tgagattctc agatctgagc 5041 acgtgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgagtga 5101 cgccaaccca tctgatgggt ctacagccaa cctcgtccca gaggtcaaca atgaggttat 5161 ggctttggag cccgttgttg gtgccgccat tgcggcacct gtagcgggcc aacaaaatgt 5221 aattgacccc tggattagaa ataattttgt acaagcccct ggtggagagt tcacagtatc 5281 ccctaggaac gctccaggtg aaatactatg gagcgcgccc ctaggccctg atttgaatcc 5341 ttacctttcc catttggcca gaatgtacaa tggttatgca ggtggttttg aagtgcaggt 5401 aatcctcgcg gggaacgcgt tcaccgccgg aaaaatcata tttgcagcag tcccaccaaa 5461 tttcccaact gaaggcttga gccccagcca ggttactatg ttcccccaca taatagtaga 5521 tgttaggcaa ctggaacctg tgttgatccc cttacccgat gttaggaata atttctatca 5581 ctacaatcaa tcaaatgacc ccaccatcaa attgatagca atgttgtaca caccacttag 5641 ggctaataat gctggggacg atgtcttcac agtttcttgt cgggtactca cgagaccatc 5701 ccccgatttt gatttcatat ttttagtgcc acccacagtt gaatcaagaa ctaaaccatt 5761 ctctgtccca attttaactg ttgaggagat gaccaattca agattcccca ttcctttgga 5821 aaagctgttc acgggtccca gcagtgcctt tgttgttcaa ccacaaaacg gcaggtgcac 5881 gactgatggc gtgctcctag gtaccaccca actgtctcct gtcaacatct gcaccttcag 5941 aggggatgtc acccatatta caggtagtcg taactacaca atgaatttgg ctactcaaaa 6001 ttggaacagt tatgacccaa cagaagaaat cccagcccct ctaggaactc cagatttcgt 6061 gggaaagatc caaggtgtgc tcacccaaac cacgagggca gatggctcga cccgtggaca 6121 caaagctaca gtgtacactg ggagcgccga ctttgctcca aaactgggta gagttcaatt 6181 tgccactgac acagacaatg attttgatgc taaccaaaac acaaagttca ccccagtcgg 6241 tgtcatccag gatggtgata ctgcccaccg aaatgaaccc caacaatggg tgctcccaag 6301 ttactcaggt agaaatagtc acaatgtgca cctggccccc gctgtagccc ccacttttcc 6361 gggtgagcaa cttctcttct tcagatccac tatgcccgga tgcagcgggt accccaacat 6421 ggatttggac tgtctgctcc cccaggaatg ggtgcagtat ttctatcaag aggcagcccc 6481 agcacaatct gatgtggctc tgctaagatt tgtgaatcca gacacaggta gggttttgtt 6541 tgagtgtaag cttcataaat caggctatgt tacagtggct cacaccggcc aacatgatct 6601 ggttatcccc cccaatggtt attttagatt tgattcctgg gtcaaccagt tctacacact 6661 tgcccccatg ggaaatggaa cggggcgtag acgtgcatta taatggctgg agctttcttt 6721 gctggattgg catctgatgt ccttggatcc gggcttggtt ctctgatcaa tgccggggct 6781 ggggccatca accaaaaagt tgaatttgaa aataacagaa aattgcaaca agcttccttc 6841 caattcagta gcaatctaca acaggcttcc tttcaacatg ataaagagat gctccaagca 6901 caaattgagg ccaccaaaaa gttgcaacag gaaatgatga gagttaaaca ggcaatgctc 6961 ctagagggtg gattctctga gacagatgca gcccgtgggg caatcaacgc ccccatgaca 7021 aaggctttgg actggagtgg gacaaggtac tgggctcccg atgctaggac tacaacatac 7081 aatgcaggcc acttttccat ccctcaaccc tcgggggcac tgccagggag agctaatctt 7141 agggctgctg tccccgctcg gggctcctcc aacacacctt ctaactcttc tactgctacc 7201 tctgtgtact caaatcaaac cacttcaacg agacttggtt ctacagctgg ttctggtacc 7261 agtgtctcga gcctcccgtc aactgcaagg gctaggagct gggttgagga tcaaaatagg 7321 aatttgtcac ctttcatgag gggggcccac aacatatcgt ttgtcacccc accatctagc 7381 agatcctcta gccaaggcac agtctcaacc gtgcccaaag aagttttgga ctcctggact 7441 ggcgctttca atacgcgcag gcagcctctc ttcgctcaca ttcgtaagcg aggggagtca 7501 cgggcgtaa //