Typing tool
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Typing tool
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Complete norovirus genomes
| AB933758 | GII.4 New Orleans | |
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| GII.P4 New Orleans |
ORF1: 1..5100
ORF2: 5081..6703
ORF3: 6703..7509
LOCUS AB933758 7509 bp RNA linear VRL 02-SEP-2015
DEFINITION Norovirus Hu/GII.4/Chiba6/2011/JP genomic RNA, complete genome.
ACCESSION AB933758
VERSION AB933758.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/Chiba6/2011/JP
ORGANISM Norovirus Hu/GII.4/Chiba6/2011/JP
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Sato,H., Yokoyama,M. and Motomura,K.
TITLE Identification of strong evolutionary constraints on viral capsid
protein during divergent evolution of a norovirus pandemic lineage
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7509)
AUTHORS Sato,H., Nakamura,H. and Motomura,K.
TITLE Direct Submission
JOURNAL Submitted (09-MAY-2014) Contact:Kazushi Motomura National Institute
of Infectious Diseases, Pathogen Genomics Center; Gakuen 4-7-1,
Musashi-Murayama, Tokyo 208-0011, Japan
FEATURES Location/Qualifiers
source 1..7509
/organism="Norovirus Hu/GII.4/Chiba6/2011/JP"
/mol_type="genomic RNA"
/strain="Hu/GII.4/Chiba6/2011/JP"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1498752"
/geo_loc_name="Japan:Chiba"
/collection_date="2011"
CDS 1..5100
/note="contains N-terminal, NTPase, 3A, VPg, 3Cpro and
3Dpol"
/codon_start=1
/product="polyprotein"
/protein_id="BAS30334.1"
/translation="MKMASNDASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARP
KQPPPREIPQRPPRPPTPELVKNIPPPPPNGEDEIVVSYSVKDGVSGLPDLSTVRQPE
ESNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LARVELTPLSLYWRPVYTPQYLISPDSLKKLHGETFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFYRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK
IRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYVLQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAIVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV
AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGKQLKDVRTM
PELKQALKNVSIKKCQIVYSGCTYILESDGKGCVKVDRIQSASVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVENTEETTSKDGC
PKSKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERTSLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
PGSAPTLSTKTKFWRSSAAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTEP
RGKPPKPSVLEAAKKTIINALEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKSMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFAISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLR
EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHGDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKVSKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5081..6703
/codon_start=1
/product="VP1"
/protein_id="BAS30335.1"
/translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGSHNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTDGSTRGHKATVYTGSAEFSPKLGRVQFATDTNNDFDANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6703..7509
/codon_start=1
/product="VP2"
/protein_id="BAS30336.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGATN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQSSGALQGRANLRAAAPARGSPSTPS
NSSITTSVYSNQTTSTRLGSTAGSGTSVSSLPSAARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 atgaagatgg cgtctaacga cgcttccgct gccgctgttg ctaacagcaa caacgacacc
61 gcaaaatctt caagtgacgg agtgctttct agcatggctg tcactttcaa acgagccctc
121 ggggcacggc ctaaacagcc tcccccgagg gaaataccac aaagaccccc acggccacct
181 actccagaac tggttaaaaa tattccccct cccccgccca acggagagga tgaaatagta
241 gtctcttata gtgtcaaaga tggtgtttcc ggtttgcctg acctttccac cgtcaggcaa
301 ccggaagaat ctaacacggc cttcagtgtc cctccactca atcagaggga gaatagagat
361 gctaaggaac cacttactgg aacaattctg gaaatgtggg atggagaaat ctaccattat
421 ggcctgtatg tggagcgagg tcttgtacta ggtgtgcaca aaccaccagc tgccatcagc
481 ctcgctaggg ttgagctaac accactctcc ttgtactgga gacctgtgta cactcctcag
541 tacctcatct ctccagactc tcttaagaaa ttacacggag aaacgttccc ctacacagcc
601 tttgacaaca actgttatgc cttttgttgc tgggtcctgg acctaaatga ctcgtggctg
661 agcaggagaa tgatccagag gacaactggt ttctacaggc cctaccaaga ctggaatagg
721 aaaccccttc ccaccatgga tgattccaaa ttaaagaagg tagctaatat attcctgtgt
781 gccctgtcct cgctgttcac cagacccata aaggatataa tagggaagat aaggcctctc
841 aacatcctca acatcttagc ctcatgtgat tggacttttg caggcatagt ggagtccctg
901 atactcttgg cagaactctt tggagttttc tggacacccc cagatgtgtc tgcgatgatt
961 gcccccttac tcggtgacta cgtgctacaa ggacctgagg accttgcagt ggagctcgtc
1021 cccgtggtga tggggggaat tggtttggtg ctaggattca ccaaagagaa gattgggaaa
1081 atgttgtcat ctgctgcgtc caccctgaga gcttgtaaag accttggtgc atatgggcta
1141 gagatcctaa agttggtcat gaagtggttc ttcccgaaga aggaggaagc aaatgagctg
1201 gctatagtga ggtctatcga ggatgcagtc ctggatctcg aggcaattga aaacaaccat
1261 atgaccgcct tgctcaaaga caaagacagt ctggcaacct acatgagaac acttgacctt
1321 gaggaggaga aagccaggaa actctcaacc aagtctgcct cacctgacat cgtgggtaca
1381 atcaacgccc tcctggcgag aatcgctgcc gcacgttctc tagtgcaccg agcgaaggag
1441 gagctttcca gcagaccaag gcctgtggtg ttgatgatat caggcagacc agggataggg
1501 aagacccacc tcgctaggga agtggctaag aggatcgcag cctccctcac aggagaccag
1561 cgtgtgggcc tcatcccacg caatggcgtc gaccattggg atgcgtacaa gggggagagg
1621 gtcgtcctgt gggacgatta tggaatgagc aaccctattc acgatgccct caggctgcaa
1681 gaactcgctg acacttgccc cctcactcta aactgtgaca ggattgagaa taaaggaaag
1741 gtctttgaca gcgatgtcat cattatcacc actaatctgg ccaacccagc accactggac
1801 tatgtcaact ttgaagcatg ctcgaggcgc atcgacttcc tcgtgtatgc agaggcccct
1861 gaagtcgaaa aggcgaagcg tgacttccca ggccagcctg acatgtggaa gaacgccttc
1921 agttctgact tctcacacat aaaactagca ctggccccac agggtggttt cgacaagaac
1981 gggaacaccc cacacggaaa gggcgtcatg aagactctca ccactggctc ccttattgcc
2041 cgggcatcag ggctgctcca tgagaggtta gatgaatttg aactacaagg cccagctctc
2101 accaccttca acttcgatcg caataaagtg cttgccttta gacaacttgc tgctgaaaat
2161 aaatatggat tgatggacac aatgaaggtt gggaaacaac tcaaggatgt caggaccatg
2221 ccagaactca aacaagcact caagaatgtc tcaatcaaga agtgccaaat agtgtatagt
2281 ggttgcacct atatacttga gtctgatggc aagggctgtg tgaaagttga tagaatccaa
2341 agcgcctccg tgcagaccaa caatgagctg gctggtgccc tgcaccattt gaggtgcgcc
2401 aggatcagat actatgtcaa gtgtgtccag gaggccctgt attccatcat tcaaattgct
2461 ggggctgcat ttgtcaccac gcgcatcgtc aagcgcatga acatacaaga cctatggtcc
2521 aagccacaag tggaaaacac agaggagacc accagcaagg acgggtgccc aaagtccaag
2581 gatgatgagg agtttgtcat ttcatccgac gacatcaaaa ctgagggcaa gaaagggaag
2641 aacaagactg gccgcggcaa gaagcacaca gccttttcaa gcaaaggcct cagtgatgaa
2701 gagtacgatg agtacaagag gattagagaa gaaaggaatg gcaagtactc catagaagag
2761 taccttcagg acagggacaa atactatgag gaggtggcca ttgccagggc gactgaggaa
2821 gacttctgtg aagaggagga ggccaagatt cggcaaagga tctttaggcc aacaaggaaa
2881 caacgcaagg aggaaagaac ttctctcggc ctggttacag gctctgaaat taggaaaaga
2941 aacccagatg acttcaaacc taaagggaaa ttgtgggctg acgatgacag aagtgtggac
3001 tacaatgaga aactcagctt tgaggctcca ccaagcatct ggtcgagaat agtcaacttc
3061 ggttcaggct ggggattctg ggtctccccc agtctgttta taacatcaac ccatgtcata
3121 ccccaaggcg caaaggagtt ctttggagtc cccatcaaac aaatacaggt acacaagtca
3181 ggcgagttct gtcgcttgag attcccaaaa ccaatcagga ctgatgtgac gggcatgatc
3241 ttagaagaag gcgcacctga gggcaccgtg gtcacactac tcatcaaaag gtccactggg
3301 gaactcatgc ccctagcagc taggatgggg acccatgcaa ccatgaagat ccaagggcgc
3361 actgttggag gccagatggg catgcttctg acagggtcca acgccaagag catggacctg
3421 ggtactacac caggtgattg tggctgcccc tacatctaca agagaggtaa cgactatgtg
3481 gtcattggag tccacacggc tgccgcacgt ggggggaaca ctgtcatatg tgccacccag
3541 gggagtgaag gagaggctac acttgaagga ggtgacaaca aggggacgta ctgtggtgca
3601 ccaatcctag gcccagggag tgccccaaca cttagcacca agaccaaatt ctggaggtcg
3661 tccgcagcac cgctcccacc tggcacttat gaaccagcct atcttggtgg caaggaccct
3721 agagtcaagg gtggcccttc attgcagcaa gtcatgaggg aacagttgaa gccattcaca
3781 gagcccaggg gcaaaccacc gaagccaagt gtattagaag ctgccaagaa gaccatcatt
3841 aatgcccttg agcaaacaat tgacccacct gagaaatggt cattcgcaca agcttgcgcg
3901 tcccttgaca agaccacttc cagtggtcat ccgcaccaca tgcggaaaaa cgactgctgg
3961 aacggggagt ccttcacagg caagctggca gaccaggctt ccaaggccaa cctgatgttt
4021 gaagaaggga agagtatgac cccagtctac acagctgcgc tcaaggatga gttagttaaa
4081 actgacaaaa tttatggtaa gatcaagaag agacttctct ggggctcgga cctggcgacc
4141 atgatccgat gtgctcgagc attcggaggc ctaatggatg agctcaaagc acactgtgtc
4201 acacttccca ttagagttgg tatgaatatg aatgaggatg gccccatcat cttcgagagg
4261 cattccaggt acacatatca ctatgatgct gactactctc gatgggattc aacacaacag
4321 agagccgtgt tggcagcagc tctagaaatc atggttaaat tctccccaga accacatttg
4381 gctcaggtag tcgcggaaga ccttctttct cctagcgtgg tggacgtggg cgacttcgca
4441 atatcaatca acgagggtct tccctctggg gtgccctgca cctcccaatg gaattccatc
4501 gcccactggc ttctcactct ctgtgcgcta tctgaagtca caaacttgtc ccctgatacc
4561 atacaggcca actccctctt ctctttttat ggtgatgatg aaatcgttag cacagatata
4621 aaattggacc cagagaaatt gacagcaaag ctcagggaat atgggttaaa accaacccgc
4681 cctgacaaaa ctgaaggacc ccttgtcatc tctgaagact tgaatggcct aactttcctg
4741 cggagaactg tgacccgtga cccagctggt tggtttggaa aactggagca gagttcaata
4801 ctcaggcaaa tgtactggac taggggcccc aaccatggag acccatctga gacaatgatt
4861 ccacactccc aaagacccat acaattgatg tccctactgg gggaggccgc tctccacggc
4921 ccagcgtttt acagcaaggt cagcaaattg gtcattgcag agctaaaaga aggaggcatg
4981 gatttttacg tgcccaggca agagccaatg ttcagatgga tgagattctc agatctgagc
5041 acgtgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgagtga
5101 cgccaaccca tctgatgggt ccacagccaa cctcgtccca gaggtcaata atgaggttat
5161 ggctttggag cccgttgttg gtgccgccat tgcggcacct gtagcgggcc aacaaaatgt
5221 aattgacccc tggattagaa ataactttgt acaagcccct ggtggagagt ttacagtatc
5281 ccctagaaac gctccaggtg aaatactatg gagcgcgccc ttaggccctg atttgaatcc
5341 ctacctttcc catttggcca gaatgtacaa tggttatgca ggtggttttg aagtgcaggt
5401 aatcctcgcg gggaacgcgt tcaccgccgg gaaaatcata tttgcagcag tcccaccaaa
5461 tttcccaact gaaggtttga gccccagcca agtcaccatg ttcccccaca taatagtaga
5521 tgttaggcaa ttggaacctg tgttgatccc cttacccgac gttaggaata atttctacca
5581 ttataatcaa tcaaatgacc ccaccatcaa attgatagca atgttgtata caccacttag
5641 ggctaataat gctggggacg atgtcttcac agtttcttgt cgagttctca cgagaccatc
5701 ccccgatttt gatttcatat ttctagtgcc acccacagtt gaatcaagaa ctaaaccatt
5761 ctctgtccca attctaactg ttgaggagat gaccaattca aggttcccca ttcctttgga
5821 aaagttgttc acgggcccca gtagtgcctt tgttgttcaa ccacaaaacg gcaggtgcac
5881 gactgatggc gtcctcctag gtactaccca actgtctcct gtcaacatct gcaccttcag
5941 aggggatgtc acccacattg caggcagtca taactacaca atgaatctgg cttcccaaaa
6001 ttggaacagt tatgacccaa cagaagaaat cccagcccct ctaggaactc cagatttcgt
6061 ggggaagatt caaggtgtac tcacccaaac cacaaggacg gatggctcca cccgcggcca
6121 caaagccaca gtgtacactg ggagcgccga attttcccca aaactgggta gagttcaatt
6181 tgccactgac acaaacaatg attttgatgc taaccaaaac acaaagttta ccccagtcgg
6241 tgttatccag gatggtggta ctacccaccg aaatgaaccc caacaatggg tgcttccaag
6301 ttactcaggc agaaatactc ataatgtgca cctggccccc gctgtagctc ccacttttcc
6361 gggtgagcag ctcctcttct tcagatctac catgcccgga tgcagcgggt accccaacat
6421 ggatttggac tgtctgctcc cccaggaatg ggtgcagtat ttctaccagg aggcagcccc
6481 agcacaatct gatgtggctc tgctgagatt tgtgaaccca gacacaggta gggttttgtt
6541 tgagtgtaag cttcataagt cgggctatgt tacagtggct cacactggcc aacatgattt
6601 ggttatcccc cccaatggtt attttagatt tgattcctgg gtcaatcagt tctacacact
6661 tgcccccatg ggaaacggga cggggcgtag acgtgcatta taatggctgg agctttcttt
6721 gctggattgg catctgacgt ccttggctct ggacttggtt ccctaatcaa tgctggggct
6781 ggggccatca accaaaaagt tgaatttgaa aataacagaa aattgcaaca agcttccttc
6841 caatttagta gcaatctaca acaggcttcc tttcaacatg ataaagagat gctccaagca
6901 caaattgagg ccaccaaaaa gttgcaacag gagatgatga gagtcaaaca agcaatgctc
6961 ctagagggtg gattctctga gacagatgca gcccgtgggg caaccaacgc ccccatgaca
7021 aaagctttgg actggagcgg gacaaggtat tgggctcccg atgctaggac tacaacatat
7081 aatgcaggcc gcttttccac cccacaatcc tcgggggcat tacaaggaag agctaatctt
7141 agggctgctg cccccgcccg gggttcccct agtacacctt ctaactcttc tattactact
7201 tctgtgtatt caaatcaaac cacttcaacg agacttggtt ctacagctgg ttctggtacc
7261 agtgtctcga gcctcccgtc agctgcaagg actaggagct gggttgagga tcaaaatagg
7321 aatttgtcac ctttcatgag gggggcccac aacatctcgt ttgtcacccc accatctagc
7381 agatcctcta gccaaggcac agtctcaacc gtgcccaaag aagttttgga ctcctggact
7441 ggcgctttca acacgcgcag gcagcccctc ttcgctcaca tccgtaagcg aggggagtca
7501 cgggtgtaa
//