Typing tool
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Complete norovirus genomes
AB933758 | GII.4 New Orleans | ||
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GII.P4 New Orleans |
ORF1: 1..5100 ORF2: 5081..6703 ORF3: 6703..7509LOCUS AB933758 7509 bp RNA linear VRL 02-SEP-2015 DEFINITION Norovirus Hu/GII.4/Chiba6/2011/JP genomic RNA, complete genome. ACCESSION AB933758 VERSION AB933758.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/Chiba6/2011/JP ORGANISM Norovirus Hu/GII.4/Chiba6/2011/JP Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Sato,H., Yokoyama,M. and Motomura,K. TITLE Identification of strong evolutionary constraints on viral capsid protein during divergent evolution of a norovirus pandemic lineage JOURNAL Unpublished REFERENCE 2 (bases 1 to 7509) AUTHORS Sato,H., Nakamura,H. and Motomura,K. TITLE Direct Submission JOURNAL Submitted (09-MAY-2014) Contact:Kazushi Motomura National Institute of Infectious Diseases, Pathogen Genomics Center; Gakuen 4-7-1, Musashi-Murayama, Tokyo 208-0011, Japan FEATURES Location/Qualifiers source 1..7509 /organism="Norovirus Hu/GII.4/Chiba6/2011/JP" /mol_type="genomic RNA" /strain="Hu/GII.4/Chiba6/2011/JP" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1498752" /country="Japan:Chiba" /collection_date="2011" CDS 1..5100 /note="contains N-terminal, NTPase, 3A, VPg, 3Cpro and 3Dpol" /codon_start=1 /product="polyprotein" /protein_id="BAS30334.1" /translation="MKMASNDASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARP KQPPPREIPQRPPRPPTPELVKNIPPPPPNGEDEIVVSYSVKDGVSGLPDLSTVRQPE ESNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS LARVELTPLSLYWRPVYTPQYLISPDSLKKLHGETFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFYRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK IRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYVLQGPED LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAIVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGKQLKDVRTM PELKQALKNVSIKKCQIVYSGCTYILESDGKGCVKVDRIQSASVQTNNELAGALHHLR CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVENTEETTSKDGC PKSKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERTSLGLV TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG PGSAPTLSTKTKFWRSSAAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTEP RGKPPKPSVLEAAKKTIINALEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW NGESFTGKLADQASKANLMFEEGKSMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDL ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWD STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFAISINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLR EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP NHGDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKVSKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5081..6703 /codon_start=1 /product="VP1" /protein_id="BAS30335.1" /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIAGSHNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL TQTTRTDGSTRGHKATVYTGSAEFSPKLGRVQFATDTNNDFDANQNTKFTPVGVIQDG GTTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6703..7509 /codon_start=1 /product="VP2" /protein_id="BAS30336.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGATN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQSSGALQGRANLRAAAPARGSPSTPS NSSITTSVYSNQTTSTRLGSTAGSGTSVSSLPSAARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 atgaagatgg cgtctaacga cgcttccgct gccgctgttg ctaacagcaa caacgacacc 61 gcaaaatctt caagtgacgg agtgctttct agcatggctg tcactttcaa acgagccctc 121 ggggcacggc ctaaacagcc tcccccgagg gaaataccac aaagaccccc acggccacct 181 actccagaac tggttaaaaa tattccccct cccccgccca acggagagga tgaaatagta 241 gtctcttata gtgtcaaaga tggtgtttcc ggtttgcctg acctttccac cgtcaggcaa 301 ccggaagaat ctaacacggc cttcagtgtc cctccactca atcagaggga gaatagagat 361 gctaaggaac cacttactgg aacaattctg gaaatgtggg atggagaaat ctaccattat 421 ggcctgtatg tggagcgagg tcttgtacta ggtgtgcaca aaccaccagc tgccatcagc 481 ctcgctaggg ttgagctaac accactctcc ttgtactgga gacctgtgta cactcctcag 541 tacctcatct ctccagactc tcttaagaaa ttacacggag aaacgttccc ctacacagcc 601 tttgacaaca actgttatgc cttttgttgc tgggtcctgg acctaaatga ctcgtggctg 661 agcaggagaa tgatccagag gacaactggt ttctacaggc cctaccaaga ctggaatagg 721 aaaccccttc ccaccatgga tgattccaaa ttaaagaagg tagctaatat attcctgtgt 781 gccctgtcct cgctgttcac cagacccata aaggatataa tagggaagat aaggcctctc 841 aacatcctca acatcttagc ctcatgtgat tggacttttg caggcatagt ggagtccctg 901 atactcttgg cagaactctt tggagttttc tggacacccc cagatgtgtc tgcgatgatt 961 gcccccttac tcggtgacta cgtgctacaa ggacctgagg accttgcagt ggagctcgtc 1021 cccgtggtga tggggggaat tggtttggtg ctaggattca ccaaagagaa gattgggaaa 1081 atgttgtcat ctgctgcgtc caccctgaga gcttgtaaag accttggtgc atatgggcta 1141 gagatcctaa agttggtcat gaagtggttc ttcccgaaga aggaggaagc aaatgagctg 1201 gctatagtga ggtctatcga ggatgcagtc ctggatctcg aggcaattga aaacaaccat 1261 atgaccgcct tgctcaaaga caaagacagt ctggcaacct acatgagaac acttgacctt 1321 gaggaggaga aagccaggaa actctcaacc aagtctgcct cacctgacat cgtgggtaca 1381 atcaacgccc tcctggcgag aatcgctgcc gcacgttctc tagtgcaccg agcgaaggag 1441 gagctttcca gcagaccaag gcctgtggtg ttgatgatat caggcagacc agggataggg 1501 aagacccacc tcgctaggga agtggctaag aggatcgcag cctccctcac aggagaccag 1561 cgtgtgggcc tcatcccacg caatggcgtc gaccattggg atgcgtacaa gggggagagg 1621 gtcgtcctgt gggacgatta tggaatgagc aaccctattc acgatgccct caggctgcaa 1681 gaactcgctg acacttgccc cctcactcta aactgtgaca ggattgagaa taaaggaaag 1741 gtctttgaca gcgatgtcat cattatcacc actaatctgg ccaacccagc accactggac 1801 tatgtcaact ttgaagcatg ctcgaggcgc atcgacttcc tcgtgtatgc agaggcccct 1861 gaagtcgaaa aggcgaagcg tgacttccca ggccagcctg acatgtggaa gaacgccttc 1921 agttctgact tctcacacat aaaactagca ctggccccac agggtggttt cgacaagaac 1981 gggaacaccc cacacggaaa gggcgtcatg aagactctca ccactggctc ccttattgcc 2041 cgggcatcag ggctgctcca tgagaggtta gatgaatttg aactacaagg cccagctctc 2101 accaccttca acttcgatcg caataaagtg cttgccttta gacaacttgc tgctgaaaat 2161 aaatatggat tgatggacac aatgaaggtt gggaaacaac tcaaggatgt caggaccatg 2221 ccagaactca aacaagcact caagaatgtc tcaatcaaga agtgccaaat agtgtatagt 2281 ggttgcacct atatacttga gtctgatggc aagggctgtg tgaaagttga tagaatccaa 2341 agcgcctccg tgcagaccaa caatgagctg gctggtgccc tgcaccattt gaggtgcgcc 2401 aggatcagat actatgtcaa gtgtgtccag gaggccctgt attccatcat tcaaattgct 2461 ggggctgcat ttgtcaccac gcgcatcgtc aagcgcatga acatacaaga cctatggtcc 2521 aagccacaag tggaaaacac agaggagacc accagcaagg acgggtgccc aaagtccaag 2581 gatgatgagg agtttgtcat ttcatccgac gacatcaaaa ctgagggcaa gaaagggaag 2641 aacaagactg gccgcggcaa gaagcacaca gccttttcaa gcaaaggcct cagtgatgaa 2701 gagtacgatg agtacaagag gattagagaa gaaaggaatg gcaagtactc catagaagag 2761 taccttcagg acagggacaa atactatgag gaggtggcca ttgccagggc gactgaggaa 2821 gacttctgtg aagaggagga ggccaagatt cggcaaagga tctttaggcc aacaaggaaa 2881 caacgcaagg aggaaagaac ttctctcggc ctggttacag gctctgaaat taggaaaaga 2941 aacccagatg acttcaaacc taaagggaaa ttgtgggctg acgatgacag aagtgtggac 3001 tacaatgaga aactcagctt tgaggctcca ccaagcatct ggtcgagaat agtcaacttc 3061 ggttcaggct ggggattctg ggtctccccc agtctgttta taacatcaac ccatgtcata 3121 ccccaaggcg caaaggagtt ctttggagtc cccatcaaac aaatacaggt acacaagtca 3181 ggcgagttct gtcgcttgag attcccaaaa ccaatcagga ctgatgtgac gggcatgatc 3241 ttagaagaag gcgcacctga gggcaccgtg gtcacactac tcatcaaaag gtccactggg 3301 gaactcatgc ccctagcagc taggatgggg acccatgcaa ccatgaagat ccaagggcgc 3361 actgttggag gccagatggg catgcttctg acagggtcca acgccaagag catggacctg 3421 ggtactacac caggtgattg tggctgcccc tacatctaca agagaggtaa cgactatgtg 3481 gtcattggag tccacacggc tgccgcacgt ggggggaaca ctgtcatatg tgccacccag 3541 gggagtgaag gagaggctac acttgaagga ggtgacaaca aggggacgta ctgtggtgca 3601 ccaatcctag gcccagggag tgccccaaca cttagcacca agaccaaatt ctggaggtcg 3661 tccgcagcac cgctcccacc tggcacttat gaaccagcct atcttggtgg caaggaccct 3721 agagtcaagg gtggcccttc attgcagcaa gtcatgaggg aacagttgaa gccattcaca 3781 gagcccaggg gcaaaccacc gaagccaagt gtattagaag ctgccaagaa gaccatcatt 3841 aatgcccttg agcaaacaat tgacccacct gagaaatggt cattcgcaca agcttgcgcg 3901 tcccttgaca agaccacttc cagtggtcat ccgcaccaca tgcggaaaaa cgactgctgg 3961 aacggggagt ccttcacagg caagctggca gaccaggctt ccaaggccaa cctgatgttt 4021 gaagaaggga agagtatgac cccagtctac acagctgcgc tcaaggatga gttagttaaa 4081 actgacaaaa tttatggtaa gatcaagaag agacttctct ggggctcgga cctggcgacc 4141 atgatccgat gtgctcgagc attcggaggc ctaatggatg agctcaaagc acactgtgtc 4201 acacttccca ttagagttgg tatgaatatg aatgaggatg gccccatcat cttcgagagg 4261 cattccaggt acacatatca ctatgatgct gactactctc gatgggattc aacacaacag 4321 agagccgtgt tggcagcagc tctagaaatc atggttaaat tctccccaga accacatttg 4381 gctcaggtag tcgcggaaga ccttctttct cctagcgtgg tggacgtggg cgacttcgca 4441 atatcaatca acgagggtct tccctctggg gtgccctgca cctcccaatg gaattccatc 4501 gcccactggc ttctcactct ctgtgcgcta tctgaagtca caaacttgtc ccctgatacc 4561 atacaggcca actccctctt ctctttttat ggtgatgatg aaatcgttag cacagatata 4621 aaattggacc cagagaaatt gacagcaaag ctcagggaat atgggttaaa accaacccgc 4681 cctgacaaaa ctgaaggacc ccttgtcatc tctgaagact tgaatggcct aactttcctg 4741 cggagaactg tgacccgtga cccagctggt tggtttggaa aactggagca gagttcaata 4801 ctcaggcaaa tgtactggac taggggcccc aaccatggag acccatctga gacaatgatt 4861 ccacactccc aaagacccat acaattgatg tccctactgg gggaggccgc tctccacggc 4921 ccagcgtttt acagcaaggt cagcaaattg gtcattgcag agctaaaaga aggaggcatg 4981 gatttttacg tgcccaggca agagccaatg ttcagatgga tgagattctc agatctgagc 5041 acgtgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgagtga 5101 cgccaaccca tctgatgggt ccacagccaa cctcgtccca gaggtcaata atgaggttat 5161 ggctttggag cccgttgttg gtgccgccat tgcggcacct gtagcgggcc aacaaaatgt 5221 aattgacccc tggattagaa ataactttgt acaagcccct ggtggagagt ttacagtatc 5281 ccctagaaac gctccaggtg aaatactatg gagcgcgccc ttaggccctg atttgaatcc 5341 ctacctttcc catttggcca gaatgtacaa tggttatgca ggtggttttg aagtgcaggt 5401 aatcctcgcg gggaacgcgt tcaccgccgg gaaaatcata tttgcagcag tcccaccaaa 5461 tttcccaact gaaggtttga gccccagcca agtcaccatg ttcccccaca taatagtaga 5521 tgttaggcaa ttggaacctg tgttgatccc cttacccgac gttaggaata atttctacca 5581 ttataatcaa tcaaatgacc ccaccatcaa attgatagca atgttgtata caccacttag 5641 ggctaataat gctggggacg atgtcttcac agtttcttgt cgagttctca cgagaccatc 5701 ccccgatttt gatttcatat ttctagtgcc acccacagtt gaatcaagaa ctaaaccatt 5761 ctctgtccca attctaactg ttgaggagat gaccaattca aggttcccca ttcctttgga 5821 aaagttgttc acgggcccca gtagtgcctt tgttgttcaa ccacaaaacg gcaggtgcac 5881 gactgatggc gtcctcctag gtactaccca actgtctcct gtcaacatct gcaccttcag 5941 aggggatgtc acccacattg caggcagtca taactacaca atgaatctgg cttcccaaaa 6001 ttggaacagt tatgacccaa cagaagaaat cccagcccct ctaggaactc cagatttcgt 6061 ggggaagatt caaggtgtac tcacccaaac cacaaggacg gatggctcca cccgcggcca 6121 caaagccaca gtgtacactg ggagcgccga attttcccca aaactgggta gagttcaatt 6181 tgccactgac acaaacaatg attttgatgc taaccaaaac acaaagttta ccccagtcgg 6241 tgttatccag gatggtggta ctacccaccg aaatgaaccc caacaatggg tgcttccaag 6301 ttactcaggc agaaatactc ataatgtgca cctggccccc gctgtagctc ccacttttcc 6361 gggtgagcag ctcctcttct tcagatctac catgcccgga tgcagcgggt accccaacat 6421 ggatttggac tgtctgctcc cccaggaatg ggtgcagtat ttctaccagg aggcagcccc 6481 agcacaatct gatgtggctc tgctgagatt tgtgaaccca gacacaggta gggttttgtt 6541 tgagtgtaag cttcataagt cgggctatgt tacagtggct cacactggcc aacatgattt 6601 ggttatcccc cccaatggtt attttagatt tgattcctgg gtcaatcagt tctacacact 6661 tgcccccatg ggaaacggga cggggcgtag acgtgcatta taatggctgg agctttcttt 6721 gctggattgg catctgacgt ccttggctct ggacttggtt ccctaatcaa tgctggggct 6781 ggggccatca accaaaaagt tgaatttgaa aataacagaa aattgcaaca agcttccttc 6841 caatttagta gcaatctaca acaggcttcc tttcaacatg ataaagagat gctccaagca 6901 caaattgagg ccaccaaaaa gttgcaacag gagatgatga gagtcaaaca agcaatgctc 6961 ctagagggtg gattctctga gacagatgca gcccgtgggg caaccaacgc ccccatgaca 7021 aaagctttgg actggagcgg gacaaggtat tgggctcccg atgctaggac tacaacatat 7081 aatgcaggcc gcttttccac cccacaatcc tcgggggcat tacaaggaag agctaatctt 7141 agggctgctg cccccgcccg gggttcccct agtacacctt ctaactcttc tattactact 7201 tctgtgtatt caaatcaaac cacttcaacg agacttggtt ctacagctgg ttctggtacc 7261 agtgtctcga gcctcccgtc agctgcaagg actaggagct gggttgagga tcaaaatagg 7321 aatttgtcac ctttcatgag gggggcccac aacatctcgt ttgtcacccc accatctagc 7381 agatcctcta gccaaggcac agtctcaacc gtgcccaaag aagttttgga ctcctggact 7441 ggcgctttca acacgcgcag gcagcccctc ttcgctcaca tccgtaagcg aggggagtca 7501 cgggtgtaa //