Typing tool
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Complete norovirus genomes
AB933753 | GII.4 New Orleans | ||
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GII.P4 New Orleans |
ORF1: 1..5100 ORF2: 5081..6703 ORF3: 6703..7509LOCUS AB933753 7509 bp RNA linear VRL 02-SEP-2015 DEFINITION Norovirus Hu/GII.4/Ehime4/2009/JP genomic RNA, complete genome. ACCESSION AB933753 VERSION AB933753.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/Ehime4/2009/JP ORGANISM Norovirus Hu/GII.4/Ehime4/2009/JP Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Sato,H., Yokoyama,M. and Motomura,K. TITLE Identification of strong evolutionary constraints on viral capsid protein during divergent evolution of a norovirus pandemic lineage JOURNAL Unpublished REFERENCE 2 (bases 1 to 7509) AUTHORS Sato,H., Nakamura,H. and Motomura,K. TITLE Direct Submission JOURNAL Submitted (09-MAY-2014) Contact:Kazushi Motomura National Institute of Infectious Diseases, Pathogen Genomics Center; Gakuen 4-7-1, Musashi-Murayama, Tokyo 208-0011, Japan FEATURES Location/Qualifiers source 1..7509 /organism="Norovirus Hu/GII.4/Ehime4/2009/JP" /mol_type="genomic RNA" /strain="Hu/GII.4/Ehime4/2009/JP" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1498747" /country="Japan:Ehime" /collection_date="2009" CDS 1..5100 /note="contains N-terminal, NTPase, 3A, VPg, 3Cpro and 3Dpol" /codon_start=1 /product="polyprotein" /protein_id="BAS30319.1" /translation="MKMASNDASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARP KQPPPREIPQRPPRPPTPELVKNIPPPPPNGEDEIVVSYSVKDGVSGLPDLSTVRQPE ESNTAFSVPPLNQRENRDAKEPLTGAILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS LARVELTPLSLYWRPVYTPQYLISPDSLKRLHGETFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKIANIFLCALSSLFTRPIKDIIGK IRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLIMKWFFP KKEEANELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGKQLKDVRTM PELKQALKNVSIKKCQIVYSGCTYILESDGKGNVKVDRIQSASVQTNNELAGALHHLR CARIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQDLWSKPQVENTEETTSKDGC PKPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEAILEGGDNKGTYCGAPILG PGSAPTLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTEP RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW NGESFTGKLADQASKANLMFEEGKSMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDL ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWD STQQRAVLAAALEIMVKLSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTTKLR EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP NHGDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5081..6703 /codon_start=1 /product="VP1" /protein_id="BAS30320.1" /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSTFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIAGSRNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL TQTTRTDGSTRGHKATVYTGSADFSPKLGRVQFATDTDNDFDANQNTKFTPVGVIQDG GTAHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6703..7509 /codon_start=1 /product="VP2" /protein_id="BAS30321.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN APMTKVLDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRAAVPAQGSSSTSS NSSIATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 atgaagatgg cgtctaacga cgcttccgct gccgctgttg ctaacagcaa caacgacacc 61 gcaaaatctt caagtgacgg agtgctttct agcatggctg tcacttttaa acgagccctc 121 ggggcgcggc ctaaacagcc tcccccgagg gaaataccac aaagaccccc acgaccacct 181 actccagaac tggttaaaaa tattccccct cccccgccca acggagagga tgaaatagtg 241 gtttcttata gtgtcaaaga tggtgtttcc ggtttgcctg atctttccac cgtcaggcaa 301 ccggaagaat ctaacacggc cttcagtgtc cctccactca atcagaggga gaatagagat 361 gctaaggagc cactcactgg agcaattctg gaaatgtggg atggggaaat ctaccattat 421 ggcctgtatg tggagcgagg tcttgtacta ggtgtgcaca aaccaccagc cgccatcagc 481 ctcgctaggg ttgagctaac accactctcc ttgtactgga gacctgtgta cactcctcag 541 tacctcatct ctccagactc tctcaagaga ttacacggag aaacgttccc ctacacagcc 601 tttgacaaca actgttatgc cttctgttgc tgggtcctgg atctaaatga ctcgtggctg 661 agcaggagaa tgatccagag aacaactggt ttcttcaggc cctaccaaga ctggaatagg 721 aaacccctcc ccactatgga tgactccaaa ttaaagaaga tagctaacat attcctgtgt 781 gctctgtcct cgctgttcac cagacccata aaagatataa tagggaagat aaggcctctt 841 aacatcctca acatcttagc ctcatgtgac tggacttttg caggcatagt ggagtccctg 901 atactcttgg cagaactctt tggagttttc tggacacccc cagatgtgtc tgcgatgatt 961 gcccccttac tcggtgacta cgagctacaa ggacctgagg accttgcagt ggagctcgtc 1021 cccgtggtga tggggggaat tggtttggta ctaggattca ccaaagagaa gattggaaaa 1081 atgttgtcat ctgctgcgtc caccttgaga gcttgtaaag accttggtgc atatgggcta 1141 gagatcctaa agttgatcat gaagtggttc ttcccgaaga aggaggaagc aaatgagctg 1201 gctatagtga ggtctatcga ggatgcagtc ctggatctcg aggcaattga aaacaaccat 1261 atgaccacct tgctcaaaga caaagacagt ctggcaacct acatgagaac acttgacctt 1321 gaggaggaga aggccaggaa actctcaacc aagtctgcct cacctgacat cgtgggcaca 1381 atcaacgccc tcctggcgag aatcgctgcc gcacgttctc tggtgcaccg agcgaaggag 1441 gagctttcca gcagaccaag acctgtggtg ttgatgatat caggcagacc aggaataggg 1501 aagacccacc tcgctaggga agtggctaag agaatcgcag cctcccttac aggagaccag 1561 cgtgtgggcc tcatcccacg caatggcgtc gaccattggg atgcgtacaa gggggagagg 1621 gtcgtcctat gggacgatta tggaatgagc aaccctattc acgatgccct caggctgcaa 1681 gaacttgctg acacttgccc cctcactcta aactgtgaca ggattgagaa taaaggaaag 1741 gtctttgaca gcgatgtcat catcatcacc actaatctgg ccaacccagc accactggac 1801 tatgtcaact ttgaagcatg ctcgaggcgc atcgacttcc tcgtgtatgc agaagcccct 1861 gaagtcgaaa aggcgaagcg tgacttccca ggccagcctg acatgtggaa gaacgccttc 1921 agttctgatt tctcacacat aaaactagca ctggccccac agggtggttt cgacaagaac 1981 gggaacaccc cgcacggaaa gggcgtcatg aagactctca ctactggctc ccttattgcc 2041 cgggcatcag ggctactcca tgagaggtta gatgaatttg aattacaggg cccagctctc 2101 accaccttca atttcgaccg caataaagtg cttgccttta gacaacttgc tgctgagaat 2161 aaatatggat tgatggacac aatgagagtt gggaaacagc tcaaggatgt cagaaccatg 2221 ccagaactca aacaagcact caagaatgtc tcaatcaaga agtgccaaat agtgtatagt 2281 ggttgcacct acatacttga gtctgacggc aagggtaatg tgaaggttga cagaatccaa 2341 agcgcctccg tgcagaccaa caatgagctg gctggtgccc tgcaccattt gaggtgcgcc 2401 agaatcagat actatgtcaa gtgtgtccag gaggccctgt attccatcat tcaaattgct 2461 ggggctgcat ttgtcaccac gcgcatcgcc aagcgcatga acatacaaga cctatggtcc 2521 aagccacaag tggaaaacac agaggagacc accagcaagg acgggtgccc aaaacccaag 2581 gatgatgagg agtttgtcat ttcatccgac gacatcaaaa ctgagggcaa gaaagggaag 2641 aacaagactg gccgcggcaa gaagcacaca gccttttcaa gcaaaggcct cagtgatgaa 2701 gagtacgatg agtacaagag gattagagaa gaaaggaatg gcaagtactc catagaagag 2761 tacctccagg acagggacaa atactatgag gaggtggcca ttgccagggc gactgaggaa 2821 gacttctgtg aagaggagga ggccaagatc cggcaaagga tctttaggcc aacaaggaaa 2881 caacgcaagg aggaaagagc ttctctcggt ctggtcacag gctctgaaat taggaaaaga 2941 aacccagacg acttcaaacc caagggtaaa ttgtgggctg acgatgacag aagtgtggac 3001 tacaatgaga aactcagttt tgaggcccca ccaagcatct ggtcgagaat agtcaatttt 3061 ggttcaggct ggggattctg ggtctccccc agtctgttca taacatcaac ccatgtcata 3121 ccccagggtg caaaggagtt ctttggagtc cccatcaaac aaatacaggt tcacaagtca 3181 ggcgagttct gtcgcttgag attcccaaaa ccaatcagga ctgatgtgac gggcatgatc 3241 ttagaagaag gcgcacctga gggcactgtg gtcacactac tcatcaaaag gtccaccggg 3301 gaactcatgc ccctagcagc taggatgggg acccatgcaa ccatgaagat ccaagggcgt 3361 actgttggag gccagatggg catgcttctg acaggatcca atgccaagag catggacctg 3421 ggtactacac caggtgattg tggctgtccc tatatctaca agagaggcaa tgactatgtg 3481 gtcattggag tccacacggc tgccgcacgt gggggaaaca ctgtcatatg tgccacccag 3541 gggagtgaag gggaggctat acttgaaggt ggtgacaaca aggggacata ctgtggtgca 3601 ccaatcctgg gcccagggag tgccccaacc cttagcacca agaccaaatt ctggagatcg 3661 tctacggcac cgctcccacc tggcacctat gaaccagcct atcttggtgg taaagaccct 3721 agagtcaagg gtggcccttc actgcagcaa gtcatgaggg aacagttgaa gccattcaca 3781 gagccaaggg gcaaaccacc aaagccaagt gtattagagg ctgccaagaa gaccatcatc 3841 aatgtccttg agcaaacaat tgatccacct gagaaatggt cattcgcgca agcttgcgcg 3901 tccctcgaca agaccacttc cagtggtcat ccgcaccaca tgcggaaaaa cgactgctgg 3961 aacggggagt ccttcacagg caagctggca gaccaggctt ccaaggccaa cctgatgttt 4021 gaagaaggga agagcatgac cccagtctac acagctgcgc tcaaggacga gttagttaaa 4081 actgacaaaa tttatggtaa gatcaagaag aggcttctct ggggctcaga cttggcaacc 4141 atgatccggt gtgctcgagc gttcggaggc ttaatggatg aactcaaagc acactgtgtc 4201 acacttccca ttagggttgg tatgaatatg aatgaggatg gccccatcat cttcgagagg 4261 cattccaggt acacatatca ctatgatgct gattactctc gatgggattc aacacaacag 4321 agagccgtgt tggcagcagc tctagaaatc atggttaagc tctccccaga accacatttg 4381 gctcaggtag tcgcggaaga ccttctttct cctagcgtgg tggacgtggg cgacttcaca 4441 atatcaatca acgagggtct tccctctggg gtgccctgca cctcccaatg gaattccatc 4501 gcccactggc ttctcactct ctgtgcgctc tctgaagtca caaacttgtc ccctgatacc 4561 atacaggcta actccctctt ctctttttat ggtgatgatg aaattgttag cacagacata 4621 aaattggacc cagaaaaatt gactacaaag ctcagggaat atgggttaaa accaacccgc 4681 cctgacaaaa ctgaaggacc ccttgtcatc tctgaagact tgaatggtct aaccttcctg 4741 cggagaactg tgacccgcga cccagctggt tggtttggaa aactggagca gagctcaata 4801 ctcaggcaaa tgtactggac taggggcccc aaccatggag acccatctga aacaatgata 4861 ccacactccc aaagacccat acaattgatg tccctgctgg gggaggccgc tctccacggc 4921 ccagcatttt acagcaaaat cagcaaattg gtcattgcag agctaaaaga aggtggcatg 4981 gatttttacg tgcccagaca agagccaatg ttcagatgga tgagattctc agatctgagc 5041 acgtgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgagtga 5101 cgccaaccca tctgatgggt ccacagccaa cctcgtccca gaggtcaaca atgaggttat 5161 ggctttggag cccgttgttg gtgccgctat tgcggcacct gtagcgggcc aacaaaatgt 5221 aattgacccc tggattagaa acaattttgt acaagcccct ggtggagagt ttacagtatc 5281 ccctagaaac gctccaggtg aaatactatg gagcgcgccc ttaggccctg atttgaatcc 5341 ctacctttcc catttggcca gaatgtacaa tggttatgca ggtggttttg aagtgcaggt 5401 aatcctcgcg gggaacgcgt tcaccgccgg gaaaatcata tttgcagcag tcccaccaaa 5461 tttcccaact gaaggtttga gccccagcca ggtcactatg ttcccccaca taatagtaga 5521 tgttaggcaa ttagaacctg tgttgatccc cttacccgat gttaggaata atttctatca 5581 ttataatcaa tcaaatgacc ccaccatcaa attgatagca atgttgtata caccacttag 5641 ggctaataat gctggggacg atgtcttcac agtttcttgt cgagttctta cgagaccatc 5701 ccccgatttt gatttcatat ttttagtgcc acccacagtt gaatcaagaa ctaaaccatt 5761 ctctgtccca attttaactg ttgaggagat gaccaattca aggttcccca ttcctttgga 5821 aaagttgttc acgggcccca gtagtacctt tgttgttcaa ccacaaaacg gcaggtgcac 5881 gactgatggc gtgctcctag gtactaccca actgtctcct gtcaacatct gcacctttag 5941 aggggatgtc acccacattg caggcagtcg taactacaca atgaatctgg cttcccaaaa 6001 ttggaacagt tatgacccaa cagaagaaat cccagcccct ctaggaactc cagatttcgt 6061 ggggaagatt caaggtgtgc tcacccaaac cacaaggaca gatggctcga cccgcggcca 6121 caaagctaca gtgtacactg ggagcgccga cttttctcca aaactgggta gggttcaatt 6181 tgccactgac acagacaatg atttcgatgc taaccaaaac acaaagttca ccccagtcgg 6241 tgttatccag gatggtggta ctgcccaccg aaatgaaccc caacaatggg tgctcccaag 6301 ttactcaggc agaaatactc ataatgtgca cctggccccc gctgtagccc ccacttttcc 6361 gggtgagcaa ctcctcttct tcagatctac catgcccgga tgcagcgggt accccaacat 6421 ggatttggac tgtctgcttc cccaggaatg ggtgcagtat ttctatcagg aagcagcccc 6481 agcacaatct gatgtggctc tgctaagatt tgtgaatcca gacacaggta gggttttgtt 6541 tgagtgtaag cttcataaat caggctatgt tacagtggcc cacactggcc aacatgattt 6601 ggttatcccc cccaatggtt attttagatt tgattcctgg gtcaaccagt tctacacact 6661 tgcccccatg ggaaatggga cggggcgtag acgtgcattg taatggctgg agctttcttt 6721 gctggattgg catctgacgt ccttggctct ggacttggtt ccctaatcaa tgctggggct 6781 ggggccatca accaaaaagt tgaatttgaa aataacagaa aattgcaaca agcttccttc 6841 caatttagta gcaacctaca acaggcttcc tttcaacatg ataaagagat gctccaagca 6901 cagattgagg ccaccaaaaa gttgcaacag gaaatgatga gagttaaaca agcaatgctc 6961 ctagagggtg gattctctga gacagatgca gcccgtgggg caatcaacgc ccccatgaca 7021 aaagttttag actggagcgg gacaaggtac tgggctcccg atgctaggac tacaacatat 7081 aatgcaggcc gcttttccac ccctcaaccc tcgggggcac taccaggaag agctaatctt 7141 agggctgctg ttcccgccca gggttcctcc agtacatctt ctaactcttc tattgctact 7201 tctgtgtatt caaatcaaac cacttcaacg agacttggtt ctacagctgg ttctggtacc 7261 agtgtctcga gcctcccgtc aactgcaagg actaggagct gggttgagga tcaaaacagg 7321 aatttgtcac ctttcatgag gggggcccac aacatctcgt ttgtcacccc accatctagt 7381 agatcctcta gccaaggcac agtctcaacc gtgcccaaag aagttttgga ctcctggact 7441 ggcgctttca atacgcgcag gcagcctctc ttcgctcaca tccgtaagcg aggggagtca 7501 cgggtgtaa //