Typing tool
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Typing tool
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Complete norovirus genomes
| AB933746 | GII.4 New Orleans | |
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| GII.P4 New Orleans |
ORF1: 1..5100
ORF2: 5081..6703
ORF3: 6703..7509
LOCUS AB933746 7509 bp RNA linear VRL 02-SEP-2015
DEFINITION Norovirus Hu/GII.4/Osaka1/2009/JP genomic RNA, complete genome.
ACCESSION AB933746
VERSION AB933746.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/Osaka1/2009/JP
ORGANISM Norovirus Hu/GII.4/Osaka1/2009/JP
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Sato,H., Yokoyama,M. and Motomura,K.
TITLE Identification of strong evolutionary constraints on viral capsid
protein during divergent evolution of a norovirus pandemic lineage
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7509)
AUTHORS Sato,H., Nakamura,H. and Motomura,K.
TITLE Direct Submission
JOURNAL Submitted (09-MAY-2014) Contact:Kazushi Motomura National Institute
of Infectious Diseases, Pathogen Genomics Center; Gakuen 4-7-1,
Musashi-Murayama, Tokyo 208-0011, Japan
FEATURES Location/Qualifiers
source 1..7509
/organism="Norovirus Hu/GII.4/Osaka1/2009/JP"
/mol_type="genomic RNA"
/strain="Hu/GII.4/Osaka1/2009/JP"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1498740"
/geo_loc_name="Japan:Osaka"
/collection_date="2009"
CDS 1..5100
/note="contains N-terminal, NTPase, 3A, VPg, 3Cpro and
3Dpol"
/codon_start=1
/product="polyprotein"
/protein_id="BAS30298.1"
/translation="MKMASNDASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARP
KQPPPREIPQRPPRSPTPELVKNIPPPPPNGEDEIVVSYSVKDGVSGLPDLSTVRQPE
ESNTAFSVPPLNQRESRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LARVELTPLSLYWRPVYTPQYLISPDSLKKLHGETFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK
IRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYVLQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV
AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGKQLKDVRTM
PELKQALKNVSIKKCQIVYSGCTYILESDGKGSVKVDRIQSASVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVENTEETTSKDGC
PKSKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERISLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
PGSAPTLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTEP
RGKPPKPSVLEAAKKTIINTLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKSMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFAISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLR
EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHGDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5081..6703
/codon_start=1
/product="VP1"
/protein_id="BAS30299.1"
/translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIVFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGSHNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTDGSTRGHKATVYTGSAEFSPKLGRVQFATDTNNDFDANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6703..7509
/codon_start=1
/product="VP2"
/protein_id="BAS30300.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPNASTTTYNAGRFSTPQSSGALPGRANLRVAVPARGSSSTSS
NSSIATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 atgaagatgg cgtctaacga cgcttccgct gccgctgttg ctaacagcaa caacgacacc
61 gcaaaatctt caagtgacgg agtgctttct agcatggctg tcacttttaa acgagccctc
121 ggggcacggc ctaaacagcc tcccccgagg gaaataccac aaagaccccc acgatcacct
181 actccagaac tggttaaaaa tattccccct cccccgccca acggagagga tgaaatagtg
241 gtctcttata gtgtcaaaga tggtgtttcc ggtttgcctg acctttccac cgtcaggcaa
301 ccggaagaat ctaacacggc tttcagtgtc cctccactca atcagaggga gagtagagat
361 gctaaggagc cacttactgg aacaattctg gaaatgtggg atggagaaat ctaccattat
421 ggcctgtatg tggagcgagg tcttgtacta ggtgtgcaca aaccaccagc tgccatcagc
481 ctcgctaggg ttgagctaac accactctcc ttgtactgga gacctgtgta cactcctcag
541 tacctcatct ctccggattc tctcaagaaa ttacacggag aaacgttccc ctacacagcc
601 tttgacaaca actgttatgc cttttgttgc tgggtcctgg acctaaatga ctcgtggctg
661 agcaggagaa tgatccagag gacaactggc ttcttcaggc cctaccaaga ttggaatagg
721 aaaccccttc ccactatgga tgattcaaaa ttaaagaagg tagctaatat attcctgtgt
781 gctctgtcct cgctgttcac cagacccata aaggatataa tagggaagat aaggcctctc
841 aacatcctca acatcttagc ctcatgtgat tggacttttg caggcatagt ggagtccctg
901 atactcttgg cagaactctt tggagttttc tggacacccc cagatgtgtc tgcgatgatt
961 gcccccttac tcggtgacta cgtgctacaa ggacctgagg accttgcagt ggagctcgtc
1021 cccgtggtga tggggggaat tggtttggtg ctaggattca ccaaagagaa gattgggaaa
1081 atgttgtcat ctgctgcgtc caccctgagg gcttgtaaag accttggtgc atatgggcta
1141 gagatcctaa agttggtcat gaaatggttc ttcccgaaga aggaggaagc aaatgagctg
1201 gctatagtga ggtctatcga ggatgcagtc ctggatctcg aggcaattga aaacaaccat
1261 atgaccacct tgctcaaaga caaagacagt ctggcaacct atatgagaac acttgacctt
1321 gaggaggaga aagccaggaa actctcaacc aagtctgcct cacctgacat cgtgggcaca
1381 atcaacgccc tcctggcgag aatcgctgct gcacgttctc tggtgcaccg agcgaaggag
1441 gaactttcca gcagaccaag acctgtggtg ttgatgatat caggcagacc aggaataggg
1501 aagacccacc tcgctaggga agtggctaag aggatcgcag cctcccttac aggagaccag
1561 cgtgtgggcc tcatcccacg caatggcgtc gaccattggg atgcgtacaa gggggagagg
1621 gtcgtcctat gggacgatta tggaatgagc aaccctattc acgatgccct caggctgcaa
1681 gaactcgctg acacttgccc cctcactcta aactgtgaca ggattgagaa taaaggaaag
1741 gtctttgaca gcgatgtcat cattatcacc actaatctgg ctaacccagc tccactggac
1801 tatgtcaact ttgaagcatg ctcgaggcgc atcgacttcc tcgtgtatgc agaagcccct
1861 gaagttgaaa aggcgaagcg tgacttccca ggccagcctg acatgtggaa gaacgccttc
1921 agttctgatt tctcacacat aaaactagca ctggccccac agggtggttt cgacaagaac
1981 gggaacaccc cacacggaaa gggcgtcatg aagaccctca ccactggctc ccttattgcc
2041 cgggcatcag ggctgctcca tgagaggtta gatgaatttg aactacaggg cccagctctc
2101 accaccttca atttcgatcg caataaagtg cttgccttta gacaacttgc tgctgaaaac
2161 aaatatggat tgatggacac aatgagagtt ggaaaacaac tcaaggatgt cagaaccatg
2221 ccagaactca aacaagcact caagaatgtt tcaatcaaga agtgccaaat agtgtatagt
2281 ggttgcacct acatacttga gtctgatggc aagggcagtg tgaaagttga cagaatccag
2341 agcgcctccg tgcagaccaa caatgagctg gctggtgccc tgcaccattt gaggtgcgcc
2401 agaatcagat actatgtcaa gtgtgtccag gaggccctgt attccatcat tcaaattgct
2461 ggggctgcgt ttgttaccac gcgcatcgtc aagcgcatga acatacaaga cctatggtcc
2521 aagccacaag tggaaaacac agaggagacc accagcaagg acgggtgccc aaaatccaag
2581 gatgatgagg agtttgtcat ttcatccgac gacatcaaaa ctgagggcaa gaaagggaag
2641 aacaagactg gccgcggcaa gaagcacaca gccttttcaa gcaaaggcct cagtgatgaa
2701 gagtacgatg agtacaagag gattagagaa gaaaggaatg gcaagtactc catagaagag
2761 taccttcagg acagggacaa atactatgag gaggtggcca ttgccagggc gactgaggaa
2821 gacttctgtg aagaggagga ggccaagatt cggcaaagga tctttaggcc aacaaggaaa
2881 caacgcaagg aggaaagaat ttctctcggt ctggtcacag gctctgaaat taggaaaaga
2941 aacccagacg acttcaaacc caagggaaaa ttgtgggctg acgatgacag aagtgtggac
3001 tacaatgaga aactcagttt tgaggcccca ccaagcatct ggtcgagaat agtcaacttt
3061 ggttcaggct ggggattctg ggtctccccc agtctgttca taacatcaac ccatgtcata
3121 ccccagggcg caaaggagtt ctttggagtc cccatcaaac aaatacaggt acacaagtca
3181 ggcgagttct gtcgcttgag attcccaaaa ccaatcagga cagatgtgac gggcatgatc
3241 ttagaagaag gcgcacctga gggcaccgtg gtcacactac tcatcaaaag gtccactggg
3301 gaactcatgc ccctagcagc taggatgggg acccatgcaa ccatgaagat ccaagggcgc
3361 actgttggag gccaaatggg catgcttctg acagggtcca acgccaagag catggacctg
3421 ggtactacac caggtgattg tggctgcccc tatatctata agagaggtaa tgactatgtg
3481 gtcattggag tccacacggc tgccgcacgt gggggaaaca ctgtcatatg tgccacccag
3541 gggagtgaag gagaggctac acttgaagga ggtgacaaca aggggacata ctgtggtgca
3601 ccaatcctag gcccagggag tgccccaaca cttagcacca agaccaaatt ctggaggtcg
3661 tccacagcac cgctcccacc tggcacctat gaaccagcct atcttggtgg caaggaccct
3721 agagttaagg gtggcccttc actgcagcaa gtcatgaggg aacagttaaa gccattcaca
3781 gagcccaggg gcaaaccacc aaagccaagt gtattagaag ctgccaagaa gactatcatt
3841 aatacccttg agcaaacaat tgatccacct gagaaatggt cattcgcaca agcttgcgcg
3901 tcccttgaca agaccacttc cagtggccat ccgcaccaca tgcggaaaaa cgactgctgg
3961 aacggggagt ccttcacagg caagctggca gaccaggctt ccaaggccaa cctgatgttt
4021 gaagaaggga agagcatgac cccagtctac acagctgcgc tcaaggatga gttagttaaa
4081 actgacaaaa tttatggtaa gatcaagaag agacttctct ggggctcgga cttggcgacc
4141 atgatccgat gtgctcgagc attcggaggc ctaatggatg aactcaaagc acactgtgtc
4201 acactcccca ttagagttgg tatgaatatg aatgaggatg gccccatcat cttcgagagg
4261 cattccaggt acacatatca ctatgatgct gattactctc gatgggattc aacacaacag
4321 agagccgtgt tggcagcagc tctagaaatc atggttaaat tctccccaga accacatttg
4381 gctcaggtag tcgcggaaga ccttctttct cctagcgtgg tggacgtggg cgacttcgca
4441 atatcaatca acgagggtct tccctctggg gtgccctgca cctcccaatg gaattccatc
4501 gcccactggc tcctcactct ctgtgcgctc tctgaagtca caaacttgtc ccctgatacc
4561 atacaggcca actccctctt ctctttttat ggtgatgatg aaatcgttag cacagacata
4621 aaattggacc cagagaaatt gacagcaaag ctcagggaat atgggttaaa accaacccgc
4681 cctgacaaaa ctgaagggcc ccttgtcatc tctgaagact tgaatggcct aactttcctg
4741 cggagaactg tgacccgtga cccagctggt tggtttggaa aactggagca gagttcaata
4801 ctcaggcaaa tgtactggac taggggcccc aaccatggag acccatctga aacaatgatt
4861 ccacactccc aaagacccat acaattgatg tccctactgg gggaggccgc tctccacggc
4921 ccagcatttt acagcaagat cagtaaattg gtcattgcag agctaaaaga aggtggcatg
4981 gatttttacg tgcccaggca agagccaatg ttcagatgga tgagattctc agatctgagc
5041 acgtgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgagtga
5101 cgccaaccca tctgatgggt ccacagccaa cctcgtccca gaggtcaata atgaggttat
5161 ggctttggag cccgttgttg gtgccgccat tgcggcacct gtagcgggcc aacaaaatgt
5221 aattgacccc tggattagaa acaattttgt acaagcccct ggtggagagt ttacagtatc
5281 ccctagaaac gctccaggtg aaatactatg gagcgcgccc ttaggccctg atttgaatcc
5341 ctacctttcc catttggcca gaatgtacaa tggttatgca ggtggttttg aagtgcaggt
5401 aatcctcgcg gggaacgcgt tcaccgccgg gaaaatcgta tttgcagcag tcccaccaaa
5461 tttcccaact gaaggtttga gccccagcca ggtcactatg ttcccccaca taatagtaga
5521 tgttaggcaa ttggaacctg tgttgatccc cttacccgat gttaggaata atttctatca
5581 ttataaccaa tcaaatgacc ccaccatcaa attgatagca atgttgtata caccacttag
5641 ggctaataat gctggggacg atgtcttcac agtttcttgt cgagttctca cgagaccatc
5701 ccccgatttt gatttcatat ttctagtgcc acccacagtt gaatcaagaa ctaaaccatt
5761 ctctgtccca attctaactg ttgaggagat gaccaattca aggttcccca ttcctttgga
5821 aaagttgttc acgggcccca gtagtgcttt tgttgttcaa ccacaaaacg gcaggtgcac
5881 gactgatggc gtgctcctag gtactaccca actgtctcct gtcaacatct gcaccttcag
5941 aggggatgtc acccatattg caggcagtca taactacaca atgaatctgg cttcccaaaa
6001 ttggaacagt tatgacccaa cagaggaaat cccagcccct ctaggaaccc cagatttcgt
6061 ggggaagatt caaggtgtgc tcacccaaac cacaaggacg gatggctcga cccgcggcca
6121 caaagctaca gtgtacactg ggagcgccga attttcccca aaactgggta gagttcaatt
6181 tgccactgac acaaacaatg attttgatgc taaccaaaac acaaagttca ccccagtcgg
6241 tgtcatccag gatggtggta ctacccaccg aaatgaaccc caacaatggg tgcttccaag
6301 ttactcaggc agaaatactc ataatgtgca cctggccccc gctgtagccc ccacttttcc
6361 gggtgagcag ctcctcttct tcagatctac catgcccgga tgcagcgggt accccaacat
6421 ggatttggac tgtctgctcc cccaggaatg ggtgcagtat ttctaccagg aggcagcccc
6481 agcacaatct gatgtggctc tgctaagatt tgtgaaccca gacacaggta gggtgttgtt
6541 tgagtgtaag cttcataaat caggctatgt tacagtggcc cacactggcc aacatgattt
6601 ggttatcccc cccaatggtt attttagatt tgattcctgg gtcaaccagt tctacacact
6661 tgcccccatg ggaaatggga cggggcgtag acgtgcattg taatggctgg agctttcttt
6721 gctggattgg catctgacgt ccttggctct ggacttggtt ccctaattaa tgctggggcc
6781 ggggccatca accaaaaagt tgaatttgaa aataacagaa aattgcaaca agcttccttc
6841 caatttagta gcaacctaca acaggcttca tttcaacatg ataaagagat gctccaagca
6901 caaattgagg ccaccaaaaa gttgcaacag gaaatgatga gagttaaaca agcaatgctc
6961 ctagagggtg gattctctga gacagatgca gcccgtgggg caatcaacgc ccccatgaca
7021 aaagctttgg actggagcgg gacaaggtat tgggctccca atgctagtac tacaacatac
7081 aatgcaggcc gcttttccac ccctcaatcc tcgggggcac taccaggaag agctaatctt
7141 agggttgctg tccccgcccg gggttcctct agcacatctt ctaactcctc tattgctact
7201 tctgtgtact caaatcaaac cacttcaacg agacttggtt ctacagctgg ttctggtacc
7261 agtgtctcga gcctcccgtc aactgcaagg actaggagct gggttgagga tcaaaatagg
7321 aatttgtcac cttttatgag gggggcccac aacatctcgt ttgtcacccc accatctagc
7381 agatcctcta gccaaggcac agtctcaacc gtgccaaaag aagttttgga ctcctggact
7441 ggcgctttca atacgcgcag gcagcctctc ttcgctcaca tccgtaagcg aggggagtca
7501 cgggtgtaa
//