Typing tool
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Complete norovirus genomes
AB933746 | GII.4 New Orleans | ||
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GII.P4 New Orleans |
ORF1: 1..5100 ORF2: 5081..6703 ORF3: 6703..7509LOCUS AB933746 7509 bp RNA linear VRL 02-SEP-2015 DEFINITION Norovirus Hu/GII.4/Osaka1/2009/JP genomic RNA, complete genome. ACCESSION AB933746 VERSION AB933746.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/Osaka1/2009/JP ORGANISM Norovirus Hu/GII.4/Osaka1/2009/JP Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Sato,H., Yokoyama,M. and Motomura,K. TITLE Identification of strong evolutionary constraints on viral capsid protein during divergent evolution of a norovirus pandemic lineage JOURNAL Unpublished REFERENCE 2 (bases 1 to 7509) AUTHORS Sato,H., Nakamura,H. and Motomura,K. TITLE Direct Submission JOURNAL Submitted (09-MAY-2014) Contact:Kazushi Motomura National Institute of Infectious Diseases, Pathogen Genomics Center; Gakuen 4-7-1, Musashi-Murayama, Tokyo 208-0011, Japan FEATURES Location/Qualifiers source 1..7509 /organism="Norovirus Hu/GII.4/Osaka1/2009/JP" /mol_type="genomic RNA" /strain="Hu/GII.4/Osaka1/2009/JP" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1498740" /country="Japan:Osaka" /collection_date="2009" CDS 1..5100 /note="contains N-terminal, NTPase, 3A, VPg, 3Cpro and 3Dpol" /codon_start=1 /product="polyprotein" /protein_id="BAS30298.1" /translation="MKMASNDASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARP KQPPPREIPQRPPRSPTPELVKNIPPPPPNGEDEIVVSYSVKDGVSGLPDLSTVRQPE ESNTAFSVPPLNQRESRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS LARVELTPLSLYWRPVYTPQYLISPDSLKKLHGETFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK IRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYVLQGPED LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGKQLKDVRTM PELKQALKNVSIKKCQIVYSGCTYILESDGKGSVKVDRIQSASVQTNNELAGALHHLR CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVENTEETTSKDGC PKSKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERISLGLV TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG PGSAPTLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTEP RGKPPKPSVLEAAKKTIINTLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW NGESFTGKLADQASKANLMFEEGKSMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDL ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWD STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFAISINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLR EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP NHGDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5081..6703 /codon_start=1 /product="VP1" /protein_id="BAS30299.1" /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIVFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIAGSHNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL TQTTRTDGSTRGHKATVYTGSAEFSPKLGRVQFATDTNNDFDANQNTKFTPVGVIQDG GTTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6703..7509 /codon_start=1 /product="VP2" /protein_id="BAS30300.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPNASTTTYNAGRFSTPQSSGALPGRANLRVAVPARGSSSTSS NSSIATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 atgaagatgg cgtctaacga cgcttccgct gccgctgttg ctaacagcaa caacgacacc 61 gcaaaatctt caagtgacgg agtgctttct agcatggctg tcacttttaa acgagccctc 121 ggggcacggc ctaaacagcc tcccccgagg gaaataccac aaagaccccc acgatcacct 181 actccagaac tggttaaaaa tattccccct cccccgccca acggagagga tgaaatagtg 241 gtctcttata gtgtcaaaga tggtgtttcc ggtttgcctg acctttccac cgtcaggcaa 301 ccggaagaat ctaacacggc tttcagtgtc cctccactca atcagaggga gagtagagat 361 gctaaggagc cacttactgg aacaattctg gaaatgtggg atggagaaat ctaccattat 421 ggcctgtatg tggagcgagg tcttgtacta ggtgtgcaca aaccaccagc tgccatcagc 481 ctcgctaggg ttgagctaac accactctcc ttgtactgga gacctgtgta cactcctcag 541 tacctcatct ctccggattc tctcaagaaa ttacacggag aaacgttccc ctacacagcc 601 tttgacaaca actgttatgc cttttgttgc tgggtcctgg acctaaatga ctcgtggctg 661 agcaggagaa tgatccagag gacaactggc ttcttcaggc cctaccaaga ttggaatagg 721 aaaccccttc ccactatgga tgattcaaaa ttaaagaagg tagctaatat attcctgtgt 781 gctctgtcct cgctgttcac cagacccata aaggatataa tagggaagat aaggcctctc 841 aacatcctca acatcttagc ctcatgtgat tggacttttg caggcatagt ggagtccctg 901 atactcttgg cagaactctt tggagttttc tggacacccc cagatgtgtc tgcgatgatt 961 gcccccttac tcggtgacta cgtgctacaa ggacctgagg accttgcagt ggagctcgtc 1021 cccgtggtga tggggggaat tggtttggtg ctaggattca ccaaagagaa gattgggaaa 1081 atgttgtcat ctgctgcgtc caccctgagg gcttgtaaag accttggtgc atatgggcta 1141 gagatcctaa agttggtcat gaaatggttc ttcccgaaga aggaggaagc aaatgagctg 1201 gctatagtga ggtctatcga ggatgcagtc ctggatctcg aggcaattga aaacaaccat 1261 atgaccacct tgctcaaaga caaagacagt ctggcaacct atatgagaac acttgacctt 1321 gaggaggaga aagccaggaa actctcaacc aagtctgcct cacctgacat cgtgggcaca 1381 atcaacgccc tcctggcgag aatcgctgct gcacgttctc tggtgcaccg agcgaaggag 1441 gaactttcca gcagaccaag acctgtggtg ttgatgatat caggcagacc aggaataggg 1501 aagacccacc tcgctaggga agtggctaag aggatcgcag cctcccttac aggagaccag 1561 cgtgtgggcc tcatcccacg caatggcgtc gaccattggg atgcgtacaa gggggagagg 1621 gtcgtcctat gggacgatta tggaatgagc aaccctattc acgatgccct caggctgcaa 1681 gaactcgctg acacttgccc cctcactcta aactgtgaca ggattgagaa taaaggaaag 1741 gtctttgaca gcgatgtcat cattatcacc actaatctgg ctaacccagc tccactggac 1801 tatgtcaact ttgaagcatg ctcgaggcgc atcgacttcc tcgtgtatgc agaagcccct 1861 gaagttgaaa aggcgaagcg tgacttccca ggccagcctg acatgtggaa gaacgccttc 1921 agttctgatt tctcacacat aaaactagca ctggccccac agggtggttt cgacaagaac 1981 gggaacaccc cacacggaaa gggcgtcatg aagaccctca ccactggctc ccttattgcc 2041 cgggcatcag ggctgctcca tgagaggtta gatgaatttg aactacaggg cccagctctc 2101 accaccttca atttcgatcg caataaagtg cttgccttta gacaacttgc tgctgaaaac 2161 aaatatggat tgatggacac aatgagagtt ggaaaacaac tcaaggatgt cagaaccatg 2221 ccagaactca aacaagcact caagaatgtt tcaatcaaga agtgccaaat agtgtatagt 2281 ggttgcacct acatacttga gtctgatggc aagggcagtg tgaaagttga cagaatccag 2341 agcgcctccg tgcagaccaa caatgagctg gctggtgccc tgcaccattt gaggtgcgcc 2401 agaatcagat actatgtcaa gtgtgtccag gaggccctgt attccatcat tcaaattgct 2461 ggggctgcgt ttgttaccac gcgcatcgtc aagcgcatga acatacaaga cctatggtcc 2521 aagccacaag tggaaaacac agaggagacc accagcaagg acgggtgccc aaaatccaag 2581 gatgatgagg agtttgtcat ttcatccgac gacatcaaaa ctgagggcaa gaaagggaag 2641 aacaagactg gccgcggcaa gaagcacaca gccttttcaa gcaaaggcct cagtgatgaa 2701 gagtacgatg agtacaagag gattagagaa gaaaggaatg gcaagtactc catagaagag 2761 taccttcagg acagggacaa atactatgag gaggtggcca ttgccagggc gactgaggaa 2821 gacttctgtg aagaggagga ggccaagatt cggcaaagga tctttaggcc aacaaggaaa 2881 caacgcaagg aggaaagaat ttctctcggt ctggtcacag gctctgaaat taggaaaaga 2941 aacccagacg acttcaaacc caagggaaaa ttgtgggctg acgatgacag aagtgtggac 3001 tacaatgaga aactcagttt tgaggcccca ccaagcatct ggtcgagaat agtcaacttt 3061 ggttcaggct ggggattctg ggtctccccc agtctgttca taacatcaac ccatgtcata 3121 ccccagggcg caaaggagtt ctttggagtc cccatcaaac aaatacaggt acacaagtca 3181 ggcgagttct gtcgcttgag attcccaaaa ccaatcagga cagatgtgac gggcatgatc 3241 ttagaagaag gcgcacctga gggcaccgtg gtcacactac tcatcaaaag gtccactggg 3301 gaactcatgc ccctagcagc taggatgggg acccatgcaa ccatgaagat ccaagggcgc 3361 actgttggag gccaaatggg catgcttctg acagggtcca acgccaagag catggacctg 3421 ggtactacac caggtgattg tggctgcccc tatatctata agagaggtaa tgactatgtg 3481 gtcattggag tccacacggc tgccgcacgt gggggaaaca ctgtcatatg tgccacccag 3541 gggagtgaag gagaggctac acttgaagga ggtgacaaca aggggacata ctgtggtgca 3601 ccaatcctag gcccagggag tgccccaaca cttagcacca agaccaaatt ctggaggtcg 3661 tccacagcac cgctcccacc tggcacctat gaaccagcct atcttggtgg caaggaccct 3721 agagttaagg gtggcccttc actgcagcaa gtcatgaggg aacagttaaa gccattcaca 3781 gagcccaggg gcaaaccacc aaagccaagt gtattagaag ctgccaagaa gactatcatt 3841 aatacccttg agcaaacaat tgatccacct gagaaatggt cattcgcaca agcttgcgcg 3901 tcccttgaca agaccacttc cagtggccat ccgcaccaca tgcggaaaaa cgactgctgg 3961 aacggggagt ccttcacagg caagctggca gaccaggctt ccaaggccaa cctgatgttt 4021 gaagaaggga agagcatgac cccagtctac acagctgcgc tcaaggatga gttagttaaa 4081 actgacaaaa tttatggtaa gatcaagaag agacttctct ggggctcgga cttggcgacc 4141 atgatccgat gtgctcgagc attcggaggc ctaatggatg aactcaaagc acactgtgtc 4201 acactcccca ttagagttgg tatgaatatg aatgaggatg gccccatcat cttcgagagg 4261 cattccaggt acacatatca ctatgatgct gattactctc gatgggattc aacacaacag 4321 agagccgtgt tggcagcagc tctagaaatc atggttaaat tctccccaga accacatttg 4381 gctcaggtag tcgcggaaga ccttctttct cctagcgtgg tggacgtggg cgacttcgca 4441 atatcaatca acgagggtct tccctctggg gtgccctgca cctcccaatg gaattccatc 4501 gcccactggc tcctcactct ctgtgcgctc tctgaagtca caaacttgtc ccctgatacc 4561 atacaggcca actccctctt ctctttttat ggtgatgatg aaatcgttag cacagacata 4621 aaattggacc cagagaaatt gacagcaaag ctcagggaat atgggttaaa accaacccgc 4681 cctgacaaaa ctgaagggcc ccttgtcatc tctgaagact tgaatggcct aactttcctg 4741 cggagaactg tgacccgtga cccagctggt tggtttggaa aactggagca gagttcaata 4801 ctcaggcaaa tgtactggac taggggcccc aaccatggag acccatctga aacaatgatt 4861 ccacactccc aaagacccat acaattgatg tccctactgg gggaggccgc tctccacggc 4921 ccagcatttt acagcaagat cagtaaattg gtcattgcag agctaaaaga aggtggcatg 4981 gatttttacg tgcccaggca agagccaatg ttcagatgga tgagattctc agatctgagc 5041 acgtgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgagtga 5101 cgccaaccca tctgatgggt ccacagccaa cctcgtccca gaggtcaata atgaggttat 5161 ggctttggag cccgttgttg gtgccgccat tgcggcacct gtagcgggcc aacaaaatgt 5221 aattgacccc tggattagaa acaattttgt acaagcccct ggtggagagt ttacagtatc 5281 ccctagaaac gctccaggtg aaatactatg gagcgcgccc ttaggccctg atttgaatcc 5341 ctacctttcc catttggcca gaatgtacaa tggttatgca ggtggttttg aagtgcaggt 5401 aatcctcgcg gggaacgcgt tcaccgccgg gaaaatcgta tttgcagcag tcccaccaaa 5461 tttcccaact gaaggtttga gccccagcca ggtcactatg ttcccccaca taatagtaga 5521 tgttaggcaa ttggaacctg tgttgatccc cttacccgat gttaggaata atttctatca 5581 ttataaccaa tcaaatgacc ccaccatcaa attgatagca atgttgtata caccacttag 5641 ggctaataat gctggggacg atgtcttcac agtttcttgt cgagttctca cgagaccatc 5701 ccccgatttt gatttcatat ttctagtgcc acccacagtt gaatcaagaa ctaaaccatt 5761 ctctgtccca attctaactg ttgaggagat gaccaattca aggttcccca ttcctttgga 5821 aaagttgttc acgggcccca gtagtgcttt tgttgttcaa ccacaaaacg gcaggtgcac 5881 gactgatggc gtgctcctag gtactaccca actgtctcct gtcaacatct gcaccttcag 5941 aggggatgtc acccatattg caggcagtca taactacaca atgaatctgg cttcccaaaa 6001 ttggaacagt tatgacccaa cagaggaaat cccagcccct ctaggaaccc cagatttcgt 6061 ggggaagatt caaggtgtgc tcacccaaac cacaaggacg gatggctcga cccgcggcca 6121 caaagctaca gtgtacactg ggagcgccga attttcccca aaactgggta gagttcaatt 6181 tgccactgac acaaacaatg attttgatgc taaccaaaac acaaagttca ccccagtcgg 6241 tgtcatccag gatggtggta ctacccaccg aaatgaaccc caacaatggg tgcttccaag 6301 ttactcaggc agaaatactc ataatgtgca cctggccccc gctgtagccc ccacttttcc 6361 gggtgagcag ctcctcttct tcagatctac catgcccgga tgcagcgggt accccaacat 6421 ggatttggac tgtctgctcc cccaggaatg ggtgcagtat ttctaccagg aggcagcccc 6481 agcacaatct gatgtggctc tgctaagatt tgtgaaccca gacacaggta gggtgttgtt 6541 tgagtgtaag cttcataaat caggctatgt tacagtggcc cacactggcc aacatgattt 6601 ggttatcccc cccaatggtt attttagatt tgattcctgg gtcaaccagt tctacacact 6661 tgcccccatg ggaaatggga cggggcgtag acgtgcattg taatggctgg agctttcttt 6721 gctggattgg catctgacgt ccttggctct ggacttggtt ccctaattaa tgctggggcc 6781 ggggccatca accaaaaagt tgaatttgaa aataacagaa aattgcaaca agcttccttc 6841 caatttagta gcaacctaca acaggcttca tttcaacatg ataaagagat gctccaagca 6901 caaattgagg ccaccaaaaa gttgcaacag gaaatgatga gagttaaaca agcaatgctc 6961 ctagagggtg gattctctga gacagatgca gcccgtgggg caatcaacgc ccccatgaca 7021 aaagctttgg actggagcgg gacaaggtat tgggctccca atgctagtac tacaacatac 7081 aatgcaggcc gcttttccac ccctcaatcc tcgggggcac taccaggaag agctaatctt 7141 agggttgctg tccccgcccg gggttcctct agcacatctt ctaactcctc tattgctact 7201 tctgtgtact caaatcaaac cacttcaacg agacttggtt ctacagctgg ttctggtacc 7261 agtgtctcga gcctcccgtc aactgcaagg actaggagct gggttgagga tcaaaatagg 7321 aatttgtcac cttttatgag gggggcccac aacatctcgt ttgtcacccc accatctagc 7381 agatcctcta gccaaggcac agtctcaacc gtgccaaaag aagttttgga ctcctggact 7441 ggcgctttca atacgcgcag gcagcctctc ttcgctcaca tccgtaagcg aggggagtca 7501 cgggtgtaa //