Typing tool
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Typing tool
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Complete norovirus genomes
| AB933740 | GII.4 New Orleans | |
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| GII.P4 New Orleans |
ORF1: 1..5100
ORF2: 5081..6703
ORF3: 6703..7509
LOCUS AB933740 7509 bp RNA linear VRL 02-SEP-2015
DEFINITION Norovirus Hu/GII.4/Chiba2/2009/JP genomic RNA, complete genome.
ACCESSION AB933740
VERSION AB933740.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/Chiba2/2009/JP
ORGANISM Norovirus Hu/GII.4/Chiba2/2009/JP
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Sato,H., Yokoyama,M. and Motomura,K.
TITLE Identification of strong evolutionary constraints on viral capsid
protein during divergent evolution of a norovirus pandemic lineage
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7509)
AUTHORS Sato,H., Nakamura,H. and Motomura,K.
TITLE Direct Submission
JOURNAL Submitted (09-MAY-2014) Contact:Kazushi Motomura National Institute
of Infectious Diseases, Pathogen Genomics Center; Gakuen 4-7-1,
Musashi-Murayama, Tokyo 208-0011, Japan
FEATURES Location/Qualifiers
source 1..7509
/organism="Norovirus Hu/GII.4/Chiba2/2009/JP"
/mol_type="genomic RNA"
/strain="Hu/GII.4/Chiba2/2009/JP"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1498734"
/country="Japan:Chiba"
/collection_date="2009"
CDS 1..5100
/note="contains N-terminal, NTPase, 3A, VPg, 3Cpro and
3Dpol"
/codon_start=1
/product="polyprotein"
/protein_id="BAS30280.1"
/translation="MKMASNDASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARP
KQPPPREIPQRPPRPPTPELVKNIPPPPPNGEDEIVVSYSVKDGVSGLPDLSTVRQPE
ESNTAFSVPPLNQRENRDAKEPLTGAILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LARVELTPLSLYWRPVYTPQYLISPDSLKRLHGETFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTIDDSKLKKIANIFLCALSSLFTRPIKDIIGK
IRPLNILNILASCDWTFAGVVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLIMKWFFP
KKEEANELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV
AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGKQLKDVRTM
PELKQALKNVSIKKCQIVYSGCTYILESDGKGNVKVDRIQSASVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQDLWSKPQVENTEETTSKDGC
PKPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEAILEGGDNKGTYCGAPILG
PGSAPTLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKSMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWD
STQQRAVLAAALEIMVKLSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTTKLR
EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHGDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5081..6703
/codon_start=1
/product="VP1"
/protein_id="BAS30281.1"
/translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSTFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGSRNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTDGSTRGHKATVYTGSADFSPKLGRVQFATDTDNDFDANQNTKFTPVGVIQDG
GTAHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6703..7509
/codon_start=1
/product="VP2"
/protein_id="BAS30282.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKVLDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRAAVPAQGSSSASS
NSSIATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 atgaagatgg cgtctaacga cgcttccgct gccgctgttg ctaacagcaa caacgacacc
61 gcaaaatctt caagtgacgg agtgctttct agcatggctg tcacttttaa acgagccctc
121 ggggcgcggc ctaaacagcc tcccccgagg gaaataccac aaagaccccc acgaccacct
181 actccagaac tggttaaaaa tattccccct cccccgccca acggagagga tgaaatagtg
241 gtttcttata gtgtcaaaga tggtgtttcc ggtttgcctg atctttccac cgtcaggcaa
301 ccggaagaat ctaacacggc cttcagtgtc cctccactca atcagaggga gaatagagat
361 gctaaggagc cactcactgg agcaattctg gaaatgtggg atggggaaat ctaccattat
421 ggcctgtatg tggagcgagg tcttgtacta ggtgtgcaca aaccaccagc cgccatcagc
481 ctcgctaggg ttgagctaac accactctcc ttgtactgga gacctgtgta cactcctcag
541 tacctcatct ctccagactc tctcaagaga ttacacggag aaacgttccc ctacacagcc
601 tttgacaaca actgttatgc cttctgttgc tgggtcctgg atctaaatga ctcgtggctg
661 agcaggagaa tgatccagag aacaactggt ttcttcaggc cctaccaaga ctggaatagg
721 aaacccctcc ccactataga tgactccaaa ttaaagaaga tagctaacat attcctgtgt
781 gctctgtcct cgctgttcac cagacccata aaagatataa tagggaagat aaggcctctt
841 aacatcctca acatcttagc ctcatgtgac tggacttttg caggcgtagt ggagtccctg
901 atactcttgg cagaactctt tggagttttc tggacacccc cagatgtgtc tgcgatgatt
961 gcccccttac tcggtgacta cgagctacaa ggacctgagg accttgcagt ggagctcgtc
1021 cccgtggtga tggggggaat tggtttggta ctaggattca ccaaagagaa gattggaaaa
1081 atgttgtcat ctgctgcgtc caccttgaga gcttgtaaag accttggtgc atatgggcta
1141 gagatcctaa agttgatcat gaagtggttc ttcccgaaga aggaggaagc aaatgagctg
1201 gctatagtga ggtctatcga ggatgcagtc ctggatctcg aggcaattga aaacaaccat
1261 atgaccacct tgctcaaaga caaagacagt ctggcaacct acatgagaac acttgacctt
1321 gaggaggaga aggccaggaa actctcaacc aagtctgcct cacctgacat cgtgggcaca
1381 atcaacgccc tcctggcgag aatcgctgcc gcacgttctc tggtgcaccg agcgaaggag
1441 gagctttcca gcagaccaag acctgtggtg ttgatgatat caggcagacc aggaataggg
1501 aagacccacc tcgctaggga agtggctaag agaatcgcag cctcccttac aggagaccag
1561 cgtgtgggcc tcatcccacg caatggcgtc gaccattggg atgcgtacaa gggggagagg
1621 gtcgtcctat gggacgatta tggaatgagc aaccctattc acgatgccct caggctgcaa
1681 gaacttgctg acacttgccc cctcactcta aactgtgaca ggattgagaa taaaggaaag
1741 gtctttgaca gcgatgtcat catcatcacc actaatctgg ccaacccagc accactggac
1801 tatgtcaact ttgaagcatg ctcgaggcgc atcgacttcc tcgtgtatgc agaagcccct
1861 gaagtcgaaa aggcgaagcg tgacttccca ggccagcctg acatgtggaa gaacgccttc
1921 agttctgatt tctcacacat aaaactagca ctggccccac agggtggttt cgacaagaac
1981 gggaacaccc cgcacggaaa gggcgtcatg aagactctca ctactggctc ccttattgcc
2041 cgggcatcag ggctactcca tgagaggtta gatgaatttg aattacaggg cccagctctc
2101 accaccttca atttcgaccg caataaagtg cttgccttta gacaacttgc tgctgaaaat
2161 aaatatggat tgatggacac aatgagagtt gggaaacagc tcaaggatgt cagaaccatg
2221 ccagaactca aacaagcact caagaacgtc tcaatcaaga agtgccaaat agtgtatagt
2281 ggttgcacct acatacttga gtctgacggc aagggtaatg tgaaggttga cagaatccaa
2341 agcgcctccg tgcagaccaa caatgagctg gctggtgccc ttcaccattt gaggtgcgcc
2401 agaatcagat actatgtcaa gtgtgtccag gaggccctgt attccatcat tcaaattgct
2461 ggggctgcat ttgtcaccac gcgcatcgcc aagcgcatga acatacaaga cctatggtcc
2521 aagccacaag tggaaaacac agaggagacc accagcaagg acgggtgccc aaaacccaag
2581 gatgatgagg agtttgtcat ttcatccgac gacatcaaaa ctgagggcaa gaaagggaag
2641 aacaagactg gccgcggcaa gaagcacaca gccttttcaa gcaaaggcct cagtgatgaa
2701 gagtacgatg agtacaagag gattagagaa gaaaggaatg gcaagtactc catagaagag
2761 tacctccagg acagggacaa atactatgag gaggtggcca ttgccagggc gactgaggaa
2821 gacttctgtg aagaggagga ggccaagatc cggcaaagga tctttaggcc aacaaggaaa
2881 caacgcaagg aggaaagagc ttctctcggt ctggtcacag gctctgaaat taggaaaaga
2941 aacccagacg acttcaaacc caagggtaaa ttgtgggctg acgatgacag aagtgtggac
3001 tacaatgaga aactcagttt tgaggcccca ccaagcatct ggtcgagaat agtcaatttt
3061 ggttcaggct ggggattctg ggtctccccc agtctgttca taacatcaac ccatgtcata
3121 ccccagggtg caaaggagtt ctttggagtc cccatcaaac aaatacaggt tcacaagtca
3181 ggcgagttct gtcgcttgag attcccaaaa ccaatcagga ctgatgtgac gggcatgatc
3241 ttagaagaag gcgcacctga gggcaccgtg gtcacactac tcatcaaaag gtccaccggg
3301 gaactcatgc ccctagcagc taggatgggg acccatgcaa ccatgaagat ccaagggcgc
3361 actgttggag gccagatggg catgcttctg acaggatcca atgccaagag catggacctg
3421 ggtactacac caggtgattg tggctgtccc tatatctaca agagaggcaa tgactatgtg
3481 gtcattggag tccacacggc tgccgcacgt gggggaaaca ctgtcatatg tgccacccag
3541 gggagtgaag gggaggctat acttgaaggt ggtgacaaca aggggacata ctgtggtgca
3601 ccaatcctgg gcccagggag tgccccaacc cttagcacca agaccaaatt ctggagatcg
3661 tctacggcac cgctcccacc tggcacctat gaaccagcct atcttggtgg caaagaccct
3721 agagtcaagg gtggcccttc actgcagcaa gtcatgaggg aacagttgaa gccattcaca
3781 gagccaaggg gcaaaccacc aaagccaagt gtattagagg ctgccaagaa gaccatcatc
3841 aatgtccttg agcaaacaat tgatccacct gagaaatggt cattcgcgca agcttgcgcg
3901 tccctcgaca agaccacttc cagtggtcat ccgcaccaca tgcggaaaaa cgactgctgg
3961 aacggggagt ccttcacagg caagctggca gaccaggctt ccaaggccaa cctgatgttt
4021 gaagaaggga agagcatgac cccagtctac acagctgcgc tcaaggacga gttagttaaa
4081 actgacaaaa tttatggtaa gatcaagaag aggcttctct ggggctcaga cttggcaacc
4141 atgatccggt gtgctcgagc gttcggaggc ctaatggatg aactcaaagc acactgtgtc
4201 acacttccca ttagggttgg tatgaatatg aatgaggatg gccccatcat cttcgagagg
4261 cattccaggt acacatatca ctatgatgct gattactctc gatgggattc aacacaacag
4321 agagccgtgt tggcagcagc tctagaaatc atggttaagc tctccccaga accacatttg
4381 gctcaggtag tcgcggaaga ccttctttct cctagcgtgg tggacgtggg cgacttcaca
4441 atatcaatca acgagggtct tccctctggg gtgccctgca cctcccaatg gaattccatc
4501 gcccactggc ttctcactct ctgtgcgctc tctgaagtca caaacttgtc ccctgatacc
4561 atacaggcta actccctctt ctctttttat ggtgatgatg aaattgttag cacagacata
4621 aaattggacc cagaaaaatt gactacaaag ctcagggaat atgggttaaa accaacccgc
4681 cctgacaaaa ctgaaggacc ccttgtcatc tctgaagact tgaatggtct aaccttcctg
4741 cggagaactg tgacccgcga cccagctggt tggtttggaa aactggagca gagctcaata
4801 ctcaggcaaa tgtactggac taggggcccc aaccatggag acccatctga aacaatgata
4861 ccacactccc aaagacccat acaattgatg tccctgctgg gggaggccgc tctccacggc
4921 ccagcatttt acagcaaaat cagcaaattg gtcattgcag agctaaaaga aggtggcatg
4981 gatttttacg tgcccagaca agagccaatg ttcagatgga tgagattctc agatctgagc
5041 acgtgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgagtga
5101 cgccaaccca tctgatgggt ccacagccaa cctcgtccca gaggtcaaca atgaggttat
5161 ggctttggag cccgttgttg gtgccgctat tgcggcacct gtagcgggcc aacaaaatgt
5221 aattgacccc tggattagaa acaattttgt acaagcccct ggtggagagt ttacagtatc
5281 ccctagaaac gctccaggtg aaatactatg gagcgcgccc ttaggccctg atttgaatcc
5341 ctacctttcc catttggcca gaatgtacaa tggttatgca ggtggttttg aagtgcaggt
5401 aatcctcgcg gggaacgcgt tcaccgccgg gaaaatcata tttgcagcag tcccaccaaa
5461 tttcccaact gaaggtttga gccccagcca ggtgactatg ttcccccaca taatagtaga
5521 tgttaggcaa ttagaacctg tgttgatccc cttacccgat gttaggaata atttctacca
5581 ttataatcaa tcaaatgacc ccaccatcaa attgatagca atgttgtata caccacttag
5641 ggctaataat gctggggacg atgtcttcac agtttcttgt cgagttctta cgagaccatc
5701 ccccgatttt gatttcatat ttttagtgcc acccacagtt gaatcaagaa ctaaaccatt
5761 ctctgtccca attttaactg ttgaggagat gaccaattca aggttcccca ttcctttgga
5821 aaagttgttc acgggcccca gtagtacctt tgttgttcaa ccacaaaacg gcaggtgcac
5881 gactgatggc gtgctcctag gtactaccca actgtctcct gtcaacatct gcacctttag
5941 aggggatgtc acccacattg caggcagtcg taactacaca atgaatctgg cttcccaaaa
6001 ttggaacagt tatgacccaa cagaagaaat cccagcccct ctaggaactc cagatttcgt
6061 ggggaagatt caaggtgtgc tcacccaaac cacaaggaca gatggctcga cccgcggcca
6121 caaagctaca gtgtacactg ggagcgccga cttttctcca aaactgggta gagttcaatt
6181 tgccactgac acagacaatg atttcgatgc taaccaaaac acaaagttca ccccagtcgg
6241 tgttatccag gatggtggta ctgcccaccg aaatgaaccc caacaatggg tgctcccaag
6301 ttactcaggc agaaatactc ataatgtgca cctggccccc gctgtagccc ccacttttcc
6361 gggtgagcaa ctcctcttct tcagatctac catgcccgga tgcagcgggt accccaacat
6421 ggatttggac tgtctgcttc cccaggaatg ggtgcagtat ttctatcagg aagcagcccc
6481 agcacaatct gatgtggctc tgctaagatt tgtgaatcca gacacaggta gggttttgtt
6541 tgagtgtaag cttcataaat caggctatgt tacagtggcc cacactggcc aacatgattt
6601 ggttatcccc cccaatggtt attttagatt tgattcctgg gtcaaccagt tctacacact
6661 tgcccccatg ggaaatggga cggggcgtag acgtgcattg taatggctgg agctttcttt
6721 gctggattgg catctgacgt ccttggctct ggacttggtt ccctaatcaa tgctggggct
6781 ggggccatca accaaaaagt tgaatttgaa aataacagaa aattgcaaca agcttccttc
6841 caatttagta gcaacctaca acaggcttcc tttcaacatg ataaagagat gctccaagca
6901 caaattgagg ccaccaaaaa gttgcaacag gaaatgatga gagttaaaca agcaatgctc
6961 ctagagggtg gattctctga gacagatgca gcccgtgggg caatcaacgc ccccatgaca
7021 aaagttttag actggagcgg gacaaggtac tgggctcccg atgctaggac tacaacatat
7081 aatgcaggcc gcttttccac ccctcaaccc tcgggggcac taccaggaag agctaatctt
7141 agggctgctg tccccgccca gggttcctcc agtgcatctt ctaactcttc tattgctact
7201 tctgtgtatt caaatcaaac cacttcaacg agacttggtt ctacagctgg ttctggtacc
7261 agtgtctcga gcctcccgtc aactgcaagg actaggagct gggttgagga tcaaaacagg
7321 aatttgtcac ctttcatgag gggggcccac aacatctcat ttgtcacccc accatctagt
7381 agatcctcta gccaaggcac agtctcaacc gtgcccaaag aagttttgga ctcctggact
7441 ggcgctttca atacgcgcag gcagcctctc ttcgctcaca tccgtaagcg aggggagtca
7501 cgggtgtaa
//