Typing tool
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Complete norovirus genomes
AB933738 | GII.4 New Orleans | ||
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GII.P4 New Orleans |
ORF1: 1..5097 ORF2: 5081..6703 ORF3: 6703..7509LOCUS AB933738 7509 bp RNA linear VRL 02-SEP-2015 DEFINITION Norovirus Hu/GII.4/Niigata5/2009/JP genomic RNA, complete genome. ACCESSION AB933738 VERSION AB933738.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/Niigata5/2009/JP ORGANISM Norovirus Hu/GII.4/Niigata5/2009/JP Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Sato,H., Yokoyama,M. and Motomura,K. TITLE Identification of strong evolutionary constraints on viral capsid protein during divergent evolution of a norovirus pandemic lineage JOURNAL Unpublished REFERENCE 2 (bases 1 to 7509) AUTHORS Sato,H., Nakamura,H. and Motomura,K. TITLE Direct Submission JOURNAL Submitted (09-MAY-2014) Contact:Kazushi Motomura National Institute of Infectious Diseases, Pathogen Genomics Center; Gakuen 4-7-1, Musashi-Murayama, Tokyo 208-0011, Japan FEATURES Location/Qualifiers source 1..7509 /organism="Norovirus Hu/GII.4/Niigata5/2009/JP" /mol_type="genomic RNA" /strain="Hu/GII.4/Niigata5/2009/JP" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1498732" /country="Japan:Niigata" /collection_date="2009" CDS 1..5097 /note="contains N-terminal, NTPase, 3A, VPg, 3Cpro and 3Dpol" /codon_start=1 /product="polyprotein" /protein_id="BAS30274.1" /translation="MKMASNDASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARP KQPPPRETPQRPPRPPTPELVKKIPPPPPNGEDEIVVSYSVKDGVSGLPDLSTVRQPE ESNTAFSVPPLNQRENRDAKEPLTGAILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS LARVELTPLSLYWRPVYTPQYLISPDSLKKLHGETFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKIANIFLCALSSLFTRPIKDIIGK IRPLNILNILASCDWTFAGIVESLILLAELFGIFWTPPDVSAMIAPLLGDYELQGPED LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLIMKWFFP KKEEANELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHEALRLQELADTC PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGKQLKDVRTM PELKQALKNVSIKKCQIVYSGCTYILESDGKGNVKVDRIQSASVQTNNELAGALHHLR CARIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQDLWSKPQVENTEETTNKDGC PKPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEAILEGGDNKGTYCGAPILG PGSAPTLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTEP RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHTRKNDCW NGESFTGKLADQASKANLMFEEGKSMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDL ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWD STQQRAVLAAALEIMVKLSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTTKLK EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP NHGDPSETMIPHSQRPIQLMSLLGEAALHGPTFYSKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGV" CDS 5081..6703 /codon_start=1 /product="VP1" /protein_id="BAS30275.1" /translation="MKMASNDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLFPLARKVKGYAGG FEVQVILAGKAFPAGKIIFAASPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSTFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIAGSRNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL TQTTRRDGSTRGHKATVYTGSADFSPKLGRVQFATDTDNDFDTHQNTKFTPVGVIQDG GTAHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6703..7509 /codon_start=1 /product="VP2" /protein_id="BAS30276.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSSLQQASFQHDKEMLQAQIEATKKLQQEMVRVKQAMLLEGGFSETDAARGAIN APMTKVLDWSGTRYWVPDARTTTYNAGRFSTPQPLGALPGRANLGTAVPAQGSSSTSS NSSIATSVYSNQTISTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 atgaagatgg cgtctaacga cgcttccgct gccgctgttg ctaacagcaa caacgacacc 61 gcaaaatctt caagtgacgg agtgctttct agcatggctg tcacttttaa acgagccctc 121 ggggcgcggc ctaaacagcc ccccccgagg gaaacaccac aaagaccccc acgaccacct 181 actccagaac tggtcaaaaa gatccccccc cccccgccca acggagagga tgaaatagtg 241 gtttcttata gtgtcaaaga tggtgtttcc ggtttgcctg atctttccac cgtcaggcaa 301 ccggaagaat ccaacacggc tttcagtgtc cctccactca atcagaggga gaatagagat 361 gctaaggaac cactcactgg agcaattctg gaaatgtggg atggggaaat ctaccattat 421 ggcctgtatg ttgagcgagg tcttgtacta ggtgtgcaca aaccaccagc cgccatcagc 481 ctcgccaggg ttgagctaac accactctcc ttgtactgga gacctgtgta cactcctcag 541 tacctcatct ctccagactc tctcaagaaa ttacacggag aaacatttcc ctacacagcc 601 tttgacaaca attgttatgc cttctgttgc tgggtcctgg atctaaatga ctcgtggctg 661 agcaggagaa tgatccagag aacaactggt ttcttcagac cctaccaaga ctggaatagg 721 aaacccctcc ccactatgga tgactccaaa ttaaagaaga tagctaacat attcctgtgt 781 gctctgtcct cgctgttcac cagacccata aaagatataa tagggaagat aaggcctctt 841 aacatcctca acatcttagc ttcatgtgac tggacttttg caggcatagt ggagtccctg 901 atactcttgg cagaactctt tggaattttc tggacacccc cagatgtgtc tgcgatgatt 961 gcccccttac tcggtgacta cgagttacaa ggacctgagg accttgcagt ggagctcgtc 1021 cctgtggtga tggggggaat tggtttggta ctaggattca ccaaagagaa gattggaaaa 1081 atgttgtcat ctgctgcgtc caccttgaga gcttgtaaag accttggtgc atatgggcta 1141 gagatcctaa agttgatcat gaagtggttc ttcccgaaga aggaggaagc aaatgaactg 1201 gctatagtga ggtctatcga ggatgcagtc ctggatcttg aggcaattga aaacaaccat 1261 atgaccacct tgctcaaaga caaagacagt ctggcaacct acatgagaac ccttgacctt 1321 gaggaagaaa aggccaggaa actttcaacc aagtctgcct cacctgacat cgtgggcaca 1381 atcaacgccc tcctggcgag aatcgctgcc gcacgttctc tggtgcaccg agcgaaggag 1441 gagctttcca gcagaccaag acctgtggtg ttgatgatat caggcagacc aggaataggg 1501 aagacccacc tcgctaggga agtggctaag agaatcgcag cctcccttac aggagaccag 1561 cgtgtgggcc tcatcccacg caatggcgtc gatcattggg acgcgtacaa gggggagagg 1621 gtcgtcctat gggacgatta tggaatgagc aatcctatcc acgaagccct caggctgcaa 1681 gaacttgctg acacttgccc cctcactcta aactgtgaca ggattgagaa taaaggaaag 1741 gtctttgaca gcgatgtcat catcatcacc actaatctgg ccaacccagc accactggac 1801 tatgtcaact ttgaagcatg ctcgaggcgc atcgacttcc tcgtgtatgc agaagcccct 1861 gaagtcgaaa aggcgaagcg tgacttccca ggccagcctg acatgtggaa aaacgccttc 1921 agttctgatt tctcacacat aaaactagca ctggcccctc agggtggttt cgacaagaac 1981 gggaacaccc cgcacggaaa gggcgtcatg aagactctca ctactggctc ccttattgcc 2041 cgggcatcag ggctactcca tgagaggtta gatgaatttg aattacaggg cccagctctc 2101 accaccttca atttcgaccg caataaagtg cttgccttta gacaacttgc tgctgaaaat 2161 aaatatggat tgatggacac aatgagagtt gggaaacagc tcaaggatgt tagaaccatg 2221 ccagaactca aacaagcact caagaatgtc tcaatcaaga agtgccaaat agtgtatagt 2281 ggttgcacct acatacttga gtctgacggc aagggtaatg tgaaggttga cagaatccaa 2341 agcgcctccg tgcagaccaa caatgagctg gctggtgccc tgcaccattt gaggtgcgcc 2401 agaatcagat actatgtcaa gtgtgtccag gaggccctgt attccatcat tcaaattgct 2461 ggggctgcat ttgtcaccac gcgcatcgcc aagcgcatga acatacaaga cctatggtcc 2521 aagccacaag tggaaaacac agaggagacc accaacaagg acgggtgccc aaaacccaag 2581 gatgatgagg agtttgtcat ttcatccgac gacatcaaaa ctgagggcaa gaaagggaag 2641 aacaagactg gccgcggcaa gaagcacaca gccttttcaa gcaaaggcct cagtgatgaa 2701 gagtacgatg agtacaagag gattagagaa gaaaggaatg gcaagtactc catagaagag 2761 tacctccagg acagggacaa atactatgag gaggtggcca ttgccagggc gactgaggaa 2821 gacttctgtg aagaggagga ggccaagatc cggcaaagga tctttaggcc aacaaggaaa 2881 caacgcaagg aggaaagagc ttctctcggt ctggtcacag gctctgaaat taggaaaaga 2941 aacccagacg acttcaaacc caagggtaaa ttgtgggctg acgatgacag aagtgtggac 3001 tacaatgaga aactcagttt tgaggcccca ccaagcatct ggtcgagaat agtcaatttt 3061 ggttcaggct ggggattctg ggtctccccc agtctgttca taacatcaac ccatgtcata 3121 ccccagggtg caaaggagtt ctttggagtc cccatcaaac aaattcaggt tcacaagtca 3181 ggcgagttct gtcgcttgag gttcccaaaa ccaatcagga ctgatgtgac gggcatgatc 3241 ttggaagaag gcgcacctga gggcaccgtg gtcacactac tcatcaaaag gtccaccggg 3301 gaactcatgc ccctagcagc taggatgggg acccatgcaa ccatgaagat ccaagggcgc 3361 actgttggag gccagatggg catgcttctg acaggatcca atgccaagag catggacctg 3421 ggtaccacac caggtgattg tggctgtccc tatatctaca agagaggaaa tgactatgtg 3481 gtcattggag tccacacggc tgccgcacgt gggggaaaca ctgtcatatg tgccacccag 3541 gggagtgaag gggaggctat acttgaaggt ggtgacaaca aggggacata ctgtggtgca 3601 ccaatcctgg gcccagggag tgccccaacc cttagcacca agaccaaatt ctggaggtcg 3661 tctacggcac cgctcccacc tggcacctat gaaccagcct atcttggtgg caaagaccct 3721 agagtcaagg gtggcccttc actgcagcaa gtcatgaggg aacagttgaa gccattcaca 3781 gagccaaggg gcaaaccacc aaagccaagt gtattagagg ctgccaagaa gaccatcatc 3841 aatgtccttg agcaaacaat tgatccacct gagaaatggt cattcgcgca agcttgcgcg 3901 tccctcgaca agaccacttc cagtggtcat ccgcaccaca cgcggaaaaa cgactgctgg 3961 aacggggagt ccttcacagg caagctggca gaccaggctt ccaaggccaa cctgatgttt 4021 gaagaaggga agagcatgac cccagtctac acagctgcgc tcaaggatga gttagttaaa 4081 actgacaaaa tttatggtaa gatcaagaag aggcttctct ggggctcaga tttggcaacc 4141 atgatccggt gtgctcgagc gttcggaggc ctaatggatg aactcaaagc acactgtgtc 4201 acacttccca ttagggttgg tatgaatatg aatgaggatg gccccatcat cttcgagagg 4261 cattccaggt acacatatca ctatgatgct gattactctc ggtgggattc aacacaacag 4321 agagccgtgt tggcagcagc tctagaaatc atggttaagc tctccccaga accacatttg 4381 gctcaggtag tcgcggaaga ccttctttct cctagcgtgg tggatgtggg cgacttcaca 4441 atatcaatca acgagggtct tccctctggg gtgccctgca cctcccaatg gaattccatc 4501 gcccactggc ttctcactct ctgtgcgctc tctgaagtca caaacttgtc ccctgatacc 4561 atacaggcta actccctctt ctctttttat ggtgatgatg aaattgttag cacagacata 4621 aaattggacc cagaaaaatt gactacaaag ctcaaggaat atgggttaaa accaacccgc 4681 cctgacaaaa ctgaaggacc ccttgtcatc tctgaagact tgaatggtct aaccttcctg 4741 cggagaactg tgacccgcga cccagctggt tggtttggaa aactggagca gagctcaata 4801 ctcaggcaaa tgtactggac taggggcccc aaccatggag acccttctga aacaatgata 4861 ccacactccc aaagacccat acaattgatg tccttgctgg gggaggccgc tctccacggc 4921 ccaacattct acagcaaaat cagcaaattg gtcattgcag agttaaaaga aggtggtatg 4981 gatttttacg tgcccaggca agagcctatg ttcagatgga tgagattctc agatctgagc 5041 acgtgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtctaatga 5101 cgccaaccca tctgatgggt ccacagccaa cctcgtccca gaggtcaaca atgaggttat 5161 ggctttggag cccgttgttg gtgccgctat tgcggcacct gtagcgggcc aacaaaatgt 5221 aattgacccc tggattagaa acaattttgt acaagcccct ggtggagagt tcacagtatc 5281 ccctagaaac gctccaggtg aaatactatg gagcgcgccc ttaggccctg atttgaatcc 5341 ctaccttttc ccattggcca gaaaggtcaa aggttatgca gggggttttg aagtgcaggt 5401 aattcttgcg gggaaagcgt tccccgccgg gaaaatcata tttgcagcat ccccacccaa 5461 ttttccaact gaaggcttga gtcccagcca ggtcactatg ttcccccata taatagtgga 5521 tgttaggcaa ttggaacctg tgttgatccc cttacctgat gttaggaata acttctatca 5581 ttataatcaa tcaaatgact ccaccatcaa attgatagca atgttgtata caccacttag 5641 ggctaataat gctggggaag atgtcttcac agtctcttgt cgagttctta cgagaccatc 5701 ccccgatttt gatttcatat ttttggtgcc acccacagtt gagtcaagaa ctaaaccatt 5761 ctctgtccca attttaactg ttgaagaaat gaccaattca aggttcccca ttcctttgga 5821 aaagttgttc acgggtccca gtagtacctt tgttgttcaa ccacaaaacg gcaggtgcac 5881 gactgatggc gtgctcttag gcactaccca actgtctcct gtcaacatct gcacctttag 5941 aggggatgtc acccacattg caggctctcg taattacaca atgaatttgg cttctcaaaa 6001 ttggaacagt tatgacccaa cagaagaaat cccagcccct ctaggaactc cagatttcgt 6061 ggggaagatt caaggtgtgc tcacccaaac cacaaggaga gatggttcga cccgcggcca 6121 caaagctaca gtgtacactg ggagtgccga cttttctcca aaactgggta gagttcaatt 6181 tgccactgac acagacaatg attttgatac tcaccaaaac acaaagttca ccccagtcgg 6241 tgttatccag gatggtggta ctgcccaccg aaatgaaccc caacaatggg tgctcccaag 6301 ttactcaggc agaaatactc ataatgtgca cctggcccct gctgtagccc ccactttccc 6361 gggtgagcaa ctcctcttct tcagatctac tatgcccgga tgcagcgggt accccaacat 6421 ggatttggat tgtctgcttc cccaggagtg ggtgcagtat ttctaccaag aagcagcccc 6481 agcacaatct gatgtggctc tgctaagatt tgtgaatcca gacacaggta gggttttgtt 6541 tgagtgtaag cttcataaat caggctatgt tacagtggcc cacaccggcc aacatgattt 6601 ggttatcccc cccaatggtt attttagatt tgattcctgg gtcaaccagt tctacacact 6661 tgcccccatg ggaaatggaa cggggcgtag acgtgcattg taatggctgg agctttcttt 6721 gctggattgg catctgacgt ccttggctct ggacttggtt ccctaatcaa tgctggggct 6781 ggggccatca accaaaaagt tgaatttgaa aataacagaa aattgcaaca agcttccttc 6841 caatttagta gcagtctaca acaggcttcc tttcaacatg ataaagagat gctccaagca 6901 caaattgagg ccaccaaaaa gttgcaacag gaaatggtga gagttaaaca agcaatgctc 6961 ctagagggtg gattctctga gacagatgca gcccgtgggg caatcaacgc ccccatgaca 7021 aaagttttag actggagcgg gacaaggtac tgggtccctg atgctaggac tacaacatat 7081 aatgcaggcc gcttttccac ccctcaaccc ttgggggcac tgccaggaag agctaatctc 7141 gggactgctg tccccgccca gggttcctcc agtacatctt ctaactcttc tattgctact 7201 tctgtgtatt caaatcaaac catttcaacg agacttggtt ctacagctgg ttctggtacc 7261 aatgtctcga gcctcccgtc aactgcaagg actaggagct gggttgagga tcaaaacagg 7321 aatttgtcac ctttcatgag gggggctcac aacatctcgt ttgtcacccc accatctagt 7381 agatcctcta gccaaggcac agtctcaacc gtgcctaaag aagttttgga ctcctggact 7441 ggcgctttca atacgcgcag gcagcctctc ttcgctcaca ttcgtaagcg aggggagtca 7501 cgggtgtaa //