Typing tool
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Complete norovirus genomes
AB933731 | GII.4 New Orleans | ||
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GII.P4 New Orleans |
ORF1: 1..5097 ORF2: 5078..6703 ORF3: 6703..7509LOCUS AB933731 7509 bp RNA linear VRL 02-SEP-2015 DEFINITION Norovirus Hu/GII.4/Hokkaido1/2009/JP genomic RNA, complete genome. ACCESSION AB933731 VERSION AB933731.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/Hokkaido1/2009/JP ORGANISM Norovirus Hu/GII.4/Hokkaido1/2009/JP Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Sato,H., Yokoyama,M. and Motomura,K. TITLE Identification of strong evolutionary constraints on viral capsid protein during divergent evolution of a norovirus pandemic lineage JOURNAL Unpublished REFERENCE 2 (bases 1 to 7509) AUTHORS Sato,H., Nakamura,H. and Motomura,K. TITLE Direct Submission JOURNAL Submitted (09-MAY-2014) Contact:Kazushi Motomura National Institute of Infectious Diseases, Pathogen Genomics Center; Gakuen 4-7-1, Musashi-Murayama, Tokyo 208-0011, Japan FEATURES Location/Qualifiers source 1..7509 /organism="Norovirus Hu/GII.4/Hokkaido1/2009/JP" /mol_type="genomic RNA" /strain="Hu/GII.4/Hokkaido1/2009/JP" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1498725" /country="Japan:Hokkaido" /collection_date="2009" CDS 1..5097 /note="contains N-terminal, NTPase, 3A, VPg, 3Cpro and 3Dpol" /codon_start=1 /product="polyprotein" /protein_id="BAS30253.1" /translation="MKMASNDASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARP KQPPPREKPQRPPRPPTPELVKNIPPPPPNGEDEIVVSYSVKDGVSGLPDLSTVRQPE ESNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS LAKVELAPLSLYWRPVYTPQYLISPDTLKKLSGETFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKIKKVANIFLCALSSLFTRPIKDIIGK IRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGKQLKDVRTM PELKQALKNVSIKKCQIVYSGCTYILESDGKGNVKVDRIQSAAVQTNNELAGALHHLR CARIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVENTEETTSKDGC PKPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERVSLGLV TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGRMGMLLTGSNAKSMDLGTTPGD CGCPYIYREYDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGP GSAPTLSTKTKFWRSSTASLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTEPR GKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCWN GESFTGKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLA TMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWDS TQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCTS QWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLRE YGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPN HGDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEP MFRWMRFSDLSTWRGDRNLAPSFVNEDGVE" CDS 5078..6703 /codon_start=1 /product="VP1" /protein_id="BAS30254.1" /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSKVSPIPLKKLFTGPSSAFVVQPQNGRCTTDGVLLGT TQLSPVNICTFRGDVTHIPGSRNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGV LTQTTRTNGSTRGHKATVYTGSADFSPKLGRVQFATDTDNDFETNQNTKFTPVGVIQD GSTTPRNEPQQWVLPSYSGRNIHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDL DCLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDL VIPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6703..7509 /codon_start=1 /product="VP2" /protein_id="BAS30255.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN APMTKTLDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRAAVPARGSSSTSS NSSIATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWIEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 atgaagatgg cgtctaacga cgcttccgct gccgctgttg ctaacagcaa caacgacacc 61 gcaaaatctt caagtgacgg agtgctttct agcatggctg tcacttttaa acgagccctc 121 ggggcgcggc ctaaacagcc tcccccgagg gaaaaaccac aaagaccccc acgaccacct 181 actccagaac tggttaaaaa tattccccct cccccaccca acggagagga tgagatagtg 241 gtttcttata gtgtcaaaga tggtgtttcc ggcttgcctg acctttctac cgtcaggcaa 301 ccggaagaat ctaacacggc cttcagtgtc cctccactca atcagaggga gaacagagat 361 gctaaggagc cacttactgg aacaattctg gaaatgtggg acggggaaat ctaccattat 421 ggcctgtatg tggagcgagg tcttgtacta ggtgtgcaca aaccaccagc tgccatcagc 481 ctcgctaagg ttgagctagc accactctcc ttgtactgga gacctgtgta cactcctcag 541 tacctcatct ctccagacac tctcaagaaa ttgtccggag aaacgttccc ctacacagcc 601 tttgacaaca actgttatgc cttttgttgc tgggtcctgg acctaaatga ctcgtggctg 661 agcaggagaa tgatccagag aacaactggt ttcttcaggc cctaccaaga ctggaatagg 721 aaaccccttc ccactatgga tgactccaaa ataaagaagg tagctaacat attcctgtgt 781 gctctgtcct cgctgttcac cagacccata aaagatataa tagggaagat aaggcctctt 841 aacatcctca acatcttagc ctcatgtgat tggacttttg caggcatagt ggagtccctg 901 atactcttgg cagagctctt tggagttttc tggacacccc cagatgtgtc tgcgatgatt 961 gcccccttac ttggtgacta cgagctacaa ggacctgagg accttgcagt ggagctcgtc 1021 cccgtggtga tggggggaat tggtttggtg ctaggattca ctaaagagaa gattgggaaa 1081 atgttgtcat ctgctgcgtc caccttgaga gcttgtaaag accttggtgc atatgggcta 1141 gagatcctaa agttggtcat gaagtggttc ttcccgaaga aggaggaggc aaatgagctg 1201 gctatagtga ggtctatcga ggatgcagtc ctggatctcg aggcaattga aaataaccat 1261 atgaccacct tgctcaaaga caaagacagt ctggcaacct acatgagaac acttgacctt 1321 gaggaggaga aagccaggaa actctcaacc aagtctgcct cacccgacat cgtgggcaca 1381 atcaacgccc tcctggcgag aatcgctgcc gcacgttctc tggtgcatcg agcgaaggag 1441 gagctttcca gcagaccaag acctgtggtg ttgatgatat caggcaggcc aggaataggg 1501 aagacccacc tcgctaggga agtggctaag agaatcgcgg cctccctcac aggagaccag 1561 cgtgtgggcc tcatcccacg caatggcgtc gaccattggg atgcgtacaa gggggagagg 1621 gtcgtcctat gggacgatta tggaatgagc aaccctattc acgatgccct caggctgcag 1681 gaactcgctg acacttgccc cctcactcta aactgtgaca gaattgaaaa taaaggaaag 1741 gtctttgaca gcgatgtcat cattatcacc actaatctgg ccaacccagc accactggac 1801 tatgtcaact ttgaagcatg ctcgaggcgc atcgacttcc tcgtgtatgc agaagcccct 1861 gaagtcgaaa aggcgaagcg tgacttccca ggccagcctg acatgtggaa gaacgctttc 1921 agttctgatt tctcacacat aaaactggca ctggccccac agggtggttt cgacaagaac 1981 gggaacaccc cacacggaaa gggcgtcatg aagactctca ccactggttc ccttattgcc 2041 cgggcgtcag ggctacttca tgagaggtta gatgaatttg aactacaggg cccagctctc 2101 accaccttca atttcgatcg caataaagtg cttgccttta gacagcttgc tgctgaaaat 2161 aaatatggat tgatggacac aatgagagtt gggaaacagc tcaaggatgt cagaaccatg 2221 ccagaactca aacaagcact caagaatgtc tcaatcaaga agtgccaaat agtgtatagt 2281 ggttgcacct acatacttga gtctgatggc aagggcaatg tgaaagttga caggatccaa 2341 agcgccgccg tgcagaccaa caatgagctg gctggtgccc tgcaccattt gaggtgcgcc 2401 agaatcagat actatgtcaa gtgtgtccag gaggccctgt attccatcat tcaaattgct 2461 ggggctgcat ttgtcaccac gcgcattgcc aaacgcatga acatacaaaa cctatggtcc 2521 aagccacaag tggaaaacac agaggagact accagcaagg acgggtgccc aaaacctaag 2581 gatgatgagg agtttgtcat ttcatccgac gacatcaaaa ctgagggtaa gaaagggaag 2641 aacaagactg gccgcggcaa gaagcacaca gcattttcaa gcaaaggcct cagtgatgaa 2701 gagtacgatg agtacaagag gattagagaa gaaaggaatg gcaagtactc catagaagag 2761 taccttcagg acagggacaa atactatgag gaggtggcca ttgccagggc gactgaggaa 2821 gacttctgtg aagaggagga ggccaagatc cggcaaagga tctttaggcc aacaaggaaa 2881 caacgcaagg aggaaagagt ctctctcggt ctggtcacag gctctgaaat taggaaaaga 2941 aacccagatg acttcaaacc caaggggaaa ctgtgggctg acgatgacag gagtgtggac 3001 tacaatgaga aactcagttt tgaggcccca ccaagcatct ggtcgagaat agtcaacttt 3061 ggttcaggct ggggattctg ggtctccccc agtctgttca taacatcaac ccatgtcata 3121 ccccagggcg caaaggagtt ctttggagtc cccatcaaac aaatacaggt acacaagtca 3181 ggcgagttct gtcgcttgag attcccaaaa ccaatcagga ctgatgtgac gggcatgatc 3241 ttagaagaag gcgcacctga gggcaccgtg gtcacactac tcatcaaaag gtccactggg 3301 gaactcatgc ccctagcagc taggatgggg acccatgcga ccatgaagat ccaagggcgc 3361 actgttggag gcagaatggg catgcttctg acaggatcca acgccaagag catggacctg 3421 ggcactacac caggtgattg tggctgcccc tatatctaca gagagtatga ctatgtggtc 3481 attggagtcc acacggctgc cgcacgtggg ggaaacaccg tcatatgtgc cacccagggg 3541 agtgaaggag aggctacact tgaaggtggt gacaacaagg ggacatactg tggtgcacca 3601 atcctaggcc cagggagtgc cccaacactt agcaccaaga ccaaattctg gagatcgtcc 3661 acagcatcac tcccacctgg cacctatgaa ccagcctatc ttggtggcaa ggaccctaga 3721 gtcaagggtg gcccttcact gcagcaagtc atgagggaac agttgaagcc attcacagag 3781 cccaggggca agccaccaaa accaagtgta ttagaagctg ccaagaagac catcatcaat 3841 gtccttgagc aaacaatcga tccacctgag aaatggtcgt tcgcacaagc ttgcgcgtcc 3901 cttgacaaga ccacttccag tggtcatccg caccatatgc ggaaaaatga ctgctggaac 3961 ggggagtcct tcacaggcaa gctggcagac caggcttcca aggccaacct gatgtttgag 4021 gaagggaaga acatgacccc agtctacaca gctgcgctca aggatgagtt agttaaaact 4081 gacaaaattt atggtaagat caagaagagg cttctctggg gctcggactt ggcgaccatg 4141 atccggtgtg ctcgagcatt cggaggccta atggatgaac tcaaagcaca ctgtgtcaca 4201 cttcccatta gagttggtat gaatatgaat gaggatggcc ccatcatctt cgagaggcat 4261 tccaggtaca catatcacta tgatgctgat tactctcgat gggattcaac acaacagaga 4321 gccgtgttgg cagcagctct agaaatcatg gtcaaattct ccccagaacc acatttggct 4381 caggtagtcg cggaagatct tctttctcct agcgtggtgg acgtgggcga cttcacaata 4441 tcaatcaacg agggtcttcc ctctggggtg ccctgcacct cccaatggaa ctccatcgcc 4501 cactggctcc tcactctctg tgcgctctct gaagtcacaa acctgtcccc tgacaccata 4561 caggccaact ccctcttctc tttttatggt gatgatgaaa ttgttagcac agacataaaa 4621 ttggacccag agaaattgac agcaaagctc agagaatatg ggttaaaacc aacccgccct 4681 gacaaaactg aaggacccct tgtcatctct gaagacctga atggcctaac tttcctgcgg 4741 agaactgtga cccgcgaccc agctggttgg tttggaaaac tggagcagag ttcaatactc 4801 aggcaaatgt actggactag aggtcccaac catggagacc catctgaaac aatgattcca 4861 cactcccaaa gacccataca attgatgtcc ctactggggg aggccgctct ccacggccca 4921 gcgttttaca gcaaaatcag caaattggtc attgcagagc taaaagaagg tggcatggat 4981 ttttacgtgc ccagacaaga gccaatgttc agatggatga gattctcaga tctgagcacg 5041 tggaggggcg atcgcaatct ggctcccagt tttgtgaatg aagatggcgt cgagtgacgc 5101 caacccatct gatgggtcca cagccaacct cgtcccagag gtcaacaatg aggttatggc 5161 tttggagccc gtagttggtg ccgccattgc ggcacctgta gcgggccaac aaaatgtaat 5221 tgacccctgg attagaaaca attttgtaca agcccctggt ggagagttta cagtatcccc 5281 tagaaacgct ccaggtgaaa tactatggag cgcgccctta ggccctgatt tgaatcccta 5341 cctttcccat ttggccagaa tgtacaatgg ttatgcaggt ggttttgaag tgcaggtaat 5401 cctcgcgggg aacgcgttca ccgccgggaa aattatattt gcagcagtcc caccaaactt 5461 cccaactgaa ggtttgagcc ccagccaggt cactatgttc ccccacataa tagtagatgt 5521 taggcaattg gaacctgtgt tgatcccctt acccgatgtt aggaataact tctaccatta 5581 taatcaatca aatgacccca ccatcaaatt gatagcaatg ttgtacacac cacttagggc 5641 taataacgcc ggggacgatg tcttcacagt ttcttgtcga gttctcacga gaccatcccc 5701 cgattttgat ttcatatttt tggtgccacc cacagttgaa tcaagaacta aaccattctc 5761 tgtcccagtt ttaactgttg aggagatgac caattcaaag gtttccccca ttcccttgaa 5821 aaagttgttc acgggcccca gtagtgcctt tgttgttcaa ccacaaaacg gcaggtgcac 5881 gactgatggc gtgctcctag gtactaccca actgtctcct gtcaacatct gcaccttcag 5941 aggggatgtc acccatattc caggcagtcg taactacaca atgaatttgg cctcccaaaa 6001 ttggaacagt tacgatccaa cagaagaaat cccagcccct ctaggaactc cagatttcgt 6061 ggggaagatt caaggtgtgc tcacccaaac cacaaggaca aatggctcga cccgcggcca 6121 caaagctaca gtgtacactg ggagcgccga cttttctcca aaactgggta gagttcaatt 6181 tgccaccgac acagacaatg attttgaaac taaccaaaac acaaagttca ccccagtcgg 6241 tgttattcag gatggtagta ctaccccccg aaatgaaccc caacaatggg tgctcccaag 6301 ttattcaggc agaaacattc ataatgtgca cctggccccc gctgtagccc ccactttccc 6361 gggcgagcag ctcctcttct tcagatctac tatgcccgga tgcagcgggt accccaacat 6421 ggatttggac tgtctgctcc cccaggaatg ggtgcagtat ttctaccagg aggcagcccc 6481 agcacaatct gatgtggctc tgttgagatt tgtgaatcca gacacaggta gggttttgtt 6541 tgagtgtaag cttcataaat caggctatgt tacagtggct cacactggcc aacatgattt 6601 ggttatcccc cccaatggtt attttagatt tgattcctgg gtcaaccagt tctacacact 6661 tgcccccatg ggaaatggga cggggcgtag acgtgcatta taatggctgg agctttcttt 6721 gctggattgg catctgacgt ccttggctct ggacttggtt ccctaatcaa tgctggggct 6781 ggggccatca accaaaaagt tgaatttgaa aataatagaa aattgcaaca agcttccttc 6841 caatttagta gcaatctaca acaggcttcc tttcaacatg acaaagagat gctccaagca 6901 caaattgagg ccaccaaaaa gttgcaacag gaaatgatga gagttaaaca agcaatgctc 6961 ctagagggtg gattctctga gacagatgca gcccgtgggg caatcaacgc ccccatgaca 7021 aaaactttgg actggagcgg gacaaggtac tgggctcctg atgctaggac tacaacatat 7081 aatgcaggcc gcttttccac ccctcaaccc tcgggggctc taccaggaag agctaatctt 7141 agggctgctg tccccgcccg gggttcctct agcacatctt ctaactcttc tattgctact 7201 tctgtgtatt caaatcaaac cacctcaacg agacttggtt ctacagctgg ttctggcacc 7261 agtgtctcga gcctcccgtc aactgcaagg actaggagct ggattgagga tcaaaacagg 7321 aatttgtcac ctttcatgag gggggcccac aacatctcgt ttgtcacccc accatctagc 7381 agatcctcta gccaaggcac agtctcaacc gtgcccaaag aagttttgga ctcctggact 7441 ggcgctttca acacgcgcag gcagcctctc ttcgctcaca ttcgcaagcg aggggagtca 7501 cgggtgtaa //