Typing tool
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Complete norovirus genomes
AB933730 | GII.4 New Orleans | ||
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GII.P4 US95 |
ORF1: 1..5100 ORF2: 5081..6703 ORF3: 6703..7509LOCUS AB933730 7509 bp RNA linear VRL 02-SEP-2015 DEFINITION Norovirus Hu/GII.4/Ehime1/2009/JP genomic RNA, complete genome. ACCESSION AB933730 VERSION AB933730.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/Ehime1/2009/JP ORGANISM Norovirus Hu/GII.4/Ehime1/2009/JP Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Sato,H., Yokoyama,M. and Motomura,K. TITLE Identification of strong evolutionary constraints on viral capsid protein during divergent evolution of a norovirus pandemic lineage JOURNAL Unpublished REFERENCE 2 (bases 1 to 7509) AUTHORS Sato,H., Nakamura,H. and Motomura,K. TITLE Direct Submission JOURNAL Submitted (09-MAY-2014) Contact:Kazushi Motomura National Institute of Infectious Diseases, Pathogen Genomics Center; Gakuen 4-7-1, Musashi-Murayama, Tokyo 208-0011, Japan FEATURES Location/Qualifiers source 1..7509 /organism="Norovirus Hu/GII.4/Ehime1/2009/JP" /mol_type="genomic RNA" /strain="Hu/GII.4/Ehime1/2009/JP" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1498724" /country="Japan:Ehime" /collection_date="2009" CDS 1..5100 /note="contains N-terminal, NTPase, 3A, VPg, 3Cpro and 3Dpol" /codon_start=1 /product="polyprotein" /protein_id="BAS30250.1" /translation="MKMASNDASAAAVANSNNDTAKSSSDKMFSSMAVTFKRALGARP KQPPPREIPQRPPRPPTPELVKKIPPPPPNGEDEVVVSYSAKDGVSGLPELSTVRQPE ETNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS LAKVELTPLSLFWRPVYTPQYLISPDTLKKLHGETFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGK LRPLNIINILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMVAPLLGDFELQGPED LVVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMKIGRQLKDVKTM PELKQALKNISIKKCQIVYSGCTYTLESDGKGNVKVDRVQSTSIQTSNELAGALHHLR CARIRYYVKCVQEALYSIIQIAGAAFVTTRIIKRVNIQDLWSKPQVENTEEATNKDGC PKPKDDEEFVISSDDIKTEGKKGKNKAGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVSFGSGWGFWVSP SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVVTLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDYVAIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW NGESFTGKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDL ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWD STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLR EYGLKPTRPDKTEGPLAISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGS NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5081..6703 /codon_start=1 /product="VP1" /protein_id="BAS30251.1" /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHITGSRNYTMNLATQNWNSYDPTEEIPAPLGTPDFVGKIQGVL TQTTRADGSTRGHKATVYTGSADFAPKLGRVQFATDTDNDFDANQNTKFTPVGVIQDG DTAHRNEPQQWVLPSYSGRNSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6703..7509 /codon_start=1 /product="VP2" /protein_id="BAS30252.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGHFSTPQPSGALPGRANLRAAVPARGSSSTSS NSSTATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARARSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA" ORIGIN 1 atgaagatgg cgtctaacga cgcttccgct gccgctgttg ctaacagcaa caacgacacc 61 gcaaaatctt caagtgacaa aatgttttct agcatggctg tcacttttaa acgagccctc 121 ggggcgcgac ctaaacagcc ccccccgagg gaaataccac aaagaccccc acgaccacct 181 actccagaac tggtcaaaaa gatccctcct cccccgccca acggagagga tgaagtagtg 241 gtttcttaca gtgccaaaga tggcgtttcc ggtttacctg agctctccac cgtcaggcaa 301 ccggaagaaa ctaatacggc cttcagtgtc cctccactca atcagaggga gaatagggat 361 gctaaggaac cactgactgg aacaattctg gaaatgtggg atggagaaat ctaccattat 421 ggcctgtatg ttgagcgagg tcttgtactg ggtgtgcaca aaccaccagc tgccattagc 481 ctcgccaagg tcgaactaac accactctcc ttgttctgga gacctgtgta cactcctcag 541 tacctcatct ctccagacac tctcaagaaa ttacacggag aaacattccc ctacacagcc 601 ttcgacaaca attgctatgc cttttgttgc tgggtcctgg atctaaacga ctcgtggctg 661 agcaggagaa tgatccagag aacaactggc ttcttcagac cctaccaaga ttggaatagg 721 aaacccctcc ccactatgga tgattccaaa ttgaagaagg tggctaatat attcctgtgc 781 accctgtctt cgctattcac caggcccata aaagacataa tagggaagtt aagacccctc 841 aacatcatca acatcctggc ttcatgtgat tggactttcg caggcatagt ggagtccttg 901 atactcttgg cagagctctt tggagtcttc tggacacccc cagatgtgtc tgcgatggtt 961 gcccccttac tcggtgactt cgagttacaa ggacctgagg accttgtggt ggagctcgtc 1021 cctgtagtaa tggggggaat tggtttggtg ctaggattca ccaaagagaa gattgggaaa 1081 atgttgtcat ctgctgcatc taccttgaga gcttgtaaag atcttggtgc atatgggcta 1141 gagatcctaa agttagtcat gaagtggttc ttcccgaaga aagaagaagc aaatgaactg 1201 gctatggtga gatccatcga ggatgcagta ctggaccttg aggcaattga aaacaaccac 1261 atgaccacct tgctcaaaga caaagacagc ctggcaacct atatgagaac ccttgacctc 1321 gaggaagaga aagccagaaa actctcaacc aaatctgctt cacctgacat tgtaggcaca 1381 atcaacgccc ttctggcgag aatcgccgct gcacgctcct tggtgcaccg agcgaaggag 1441 gagctttcca gcagaccaag acctgtagtc ttgatgatat caggcagacc aggaataggg 1501 aagacccacc ttgctaggga agtggctaag agaatcgcag cctccctcac aggagaccag 1561 cgtgtgggcc tcatcccacg caatggcgtc gaccactggg atgcgtacaa gggggagagg 1621 gtcgtcctat gggacgacta tggaatgagc aatcccatcc acgacgccct caggctgcaa 1681 gaactcgctg acacttgccc cctcactcta aattgtgaca ggattgagaa taaagggaag 1741 gtctttgaca gcgatgtcat tatcatcact actaacctgg ccaacccagc accactggac 1801 tatgtcaact ttgaagcgtg ctcgaggcgc atcgatttcc tcgtgtatgc agaagccccc 1861 gaggtcgaaa aggcgaagcg tgacttcccg ggccaacctg acatgtggaa aaacgctttt 1921 agttctgatt tctcacacat aaaactggca ctggctccac aaggtggctt tgataagaac 1981 gggaacaccc cacacgggaa gggcgtcatg aagactctca ccactggctc cctcattgcc 2041 cgggcatcag ggctgctcca tgagagattg gatgagtttg aactacaggg cccagctctt 2101 accaccttca actttgaccg caacaaagtg cttgccttca ggcagcttgc tgctgaaaac 2161 aaatacggtt tgatggatac aatgaaaatt gggaggcagc tcaaggatgt caaaaccatg 2221 ccagaactta aacaagcact caagaatatc tcaatcaaga agtgccagat tgtgtatagt 2281 ggttgcacct acacacttga gtctgatggt aagggcaatg tgaaagttga cagagttcag 2341 agcacttcca ttcagaccag caatgagctg gctggcgccc tgcaccatct aaggtgcgcc 2401 agaatcaggt actatgtcaa gtgtgttcag gaggccctgt attctatcat ccagattgct 2461 ggggctgcgt ttgtcaccac gcgcatcatc aagcgtgtga acattcaaga cttatggtcc 2521 aagccacaag tggaaaacac agaggaggcc accaacaagg acgggtgccc aaaacccaaa 2581 gatgatgagg agttcgtcat ttcatccgac gacattaaaa ctgagggtaa gaaagggaag 2641 aacaaggctg gccgtggcaa gaagcacaca gccttctcaa gtaaaggtct cagtgatgaa 2701 gagtacgatg aatacaagag aattagagaa gaaaggaacg gtaagtactc catagaagag 2761 taccttcagg acagggacaa atactatgag gaggtggcca ttgccagggc gactgaggaa 2821 gacttctgtg aagaggagga ggccaagatc cggcaaagga tcttcaggcc aacaaggaaa 2881 caacgcaagg aggaaagagc ttctctcggt ttagttacag gttctgaaat taggaaaaga 2941 aatccagatg atttcaaacc caaggggaaa ctgtgggctg acgatgacag aagtgtggac 3001 tacaatgaga aactcagttt tgaagcccca ccaagcatct ggtcgagaat agtcagcttt 3061 ggttcaggtt gggggttctg ggtctccccc agtttgttca taacatcaac ccatgtcata 3121 ccccagggag caaaggagtt ctttggagtc cccatcaaac aaattcaggt acacaagtca 3181 ggcgaattct gtcgcttgag attcccaaaa ccaatcagga ctgatgtgac gggcatgatc 3241 ttagaagaag gtgcacccga gggcaccgtg gtcacactgc tcatcaaaag gcccactgga 3301 gaactcatgc ccctagcagc taggatgggg acccatgcaa ccatgaaaat ccaaggacgc 3361 actgttggag gtcaaatggg catgcttctg acaggatcca acgccaaaag catggacctg 3421 ggtaccacac caggtgattg tggctgtccc tacatctaca agagaggaaa tgactatgtg 3481 gccattggag tccacacggc tgccgctcgt gggggcaaca ctgtcatatg tgccacccag 3541 gggagtgagg gagaggctac acttgaaggt ggtgacaata aagggacata ctgtggtgca 3601 ccaatcctag gcccagggag tgccccaaaa cttagcacca agaccaaatt ctggagatcg 3661 tccacagcac cactcccacc tggcacctat gaaccagcct atcttggtgg caaggacccc 3721 agagtcaagg gtggcccttc actacagcaa gtcatgaggg atcagctgaa gccattcaca 3781 gagcccaggg gcaagccacc aaagccaagt gtgttggaag ctgctaagaa aaccatcatc 3841 aatgtccttg aacaaactat tgatccacct gagaaatggt cgttcgcaca agcttgcgcg 3901 tcccttgaca agaccacctc cagtggccac ccgcatcaca tgcggaaaaa cgactgctgg 3961 aacggggagt ccttcacagg caagctggca gaccaggcct ccaaggccaa cctgatgttt 4021 gaagaaggga agaacatgac gccagtctat acagctgcgc ttaaggacga attagttaaa 4081 actgacaaaa tttatggcaa gatcaagaag aggcttctct ggggctcgga tttggcgacc 4141 atgatccggt gtgctcgagc attcggaggc ctaatggatg aactcaaagc gcactgtgtc 4201 acacttccca ttagagttgg tatgaatatg aatgaggatg gccccatcat cttcgagagg 4261 cactctaggt acacatacca ctatgatgct gattactctc gatgggattc aacacaacag 4321 agagccgtgt tggcagcagc tctagaaatc atggttaagt tctccccaga accacatttg 4381 gcccaggtag tcgcagaaga ccttctttct cctagcgtgg tggacgtggg tgacttcaca 4441 atatcaatta acgagggtct tccctctggg gtgccctgca cctcccaatg gaactccatc 4501 gcccactggc ttctcaccct ctgtgcgctc tctgaagtta caaacttgtc tcctgacacc 4561 atacaagcta attccctctt ctctttttat ggtgatgatg aaattgttag cacagacata 4621 aagttggatc cagaaaagtt gacagcaaag ctcagggaat atgggttaaa accaacccgt 4681 cccgacaaaa ctgaaggacc ccttgccatc tctgaagact tgaatggcct gactttcctg 4741 cggagaactg tgacccgcga cccagctggt tggtttggaa aactggagca gagttcaata 4801 ctcaggcaaa tgtactggac taggggctcc aaccatgaag acccatctga aacaatgatt 4861 ccacactccc aaaggcccat acaactgatg tccctacttg gggaggccgc actccacggc 4921 ccagcattct acagcaagat cagtaagtta gtcattgcag agctaaaaga aggtggcatg 4981 gatttttacg tgcccagaca agagccaatg ttcagatgga tgagattctc agatctgagc 5041 acgtgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgagtga 5101 cgccaaccca tctgatgggt ccacagccaa cctcgtccca gaggtcaaca atgaggttat 5161 ggctttggag cccgttgttg gtgccgctat tgcggcacct gtagcgggcc aacaaaatgt 5221 aattgacccc tggattagaa acaattttgt acaagcccct ggtggagagt ttacagtatc 5281 ccctagaaac gctccaggtg aaatactatg gagcgcgccc ttaggccctg atttgaatcc 5341 ctacctttcc catttggcca gaatgtacaa tggttatgca ggtggttttg aagtgcaggt 5401 aatcctcgcg gggaacgcgt tcaccgccgg aaaaatcata tttgcagcag tcccaccaaa 5461 tttcccaact gaaggcttga gccccagcca ggtcactatg ttcccccaca taatagtaga 5521 tgttaggcaa ttggaacctg tgttgatccc cttacccgat gttaggaata atttctatca 5581 ctacaatcaa tcaaatgacc ccaccatcaa attgatagca atgttgtata caccacttag 5641 ggctaataat gctggggacg atgtcttcac agtttcttgt cgggttctca cgagaccatc 5701 ccccgatttt gacttcatat ttttagtacc acccacagtt gagtcaagaa ctaaaccatt 5761 ctctgtccca attctaactg ttgaggagat gaccaattca agattcccca ttcctttgga 5821 aaagctgttc acaggtccca gcagtgcctt tgttgttcaa ccacaaaacg gcagatgcac 5881 gactgatggc gtgctcctag gcaccactca actgtctcct gtcaacatct gcaccttcag 5941 aggggatgtc acccatatta caggtagtcg taactacaca atgaatttgg ctactcaaaa 6001 ttggaacagt tatgacccaa cagaagaaat cccagcccct ctaggaactc cagatttcgt 6061 ggggaagatt caaggtgtgc tcacccaaac cacaagggca gatggctcga cccgcggcca 6121 caaagctaca gtgtacactg ggagcgccga ttttgctcca aaactgggta gagtccaatt 6181 tgccactgac acagacaatg attttgatgc taaccaaaac acaaagttca ccccagtcgg 6241 tgtcatccag gatggtgaca ctgcccaccg aaatgaaccc caacaatggg tgctcccaag 6301 ttactcaggc agaaatagtc acaatgtgca cctggccccc gctgtagccc ccacttttcc 6361 gggtgagcaa cttctcttct tcagatccac tatgcccgga tgcagcgggt accccaacat 6421 ggatttggac tgtctgctcc cccaggaatg ggtgcagtat ttctatcaag aggcagcccc 6481 agcacaatct gatgtggctc tgctaagatt tgtgaatcca gacacaggta gggttttgtt 6541 tgagtgtaag cttcataaat caggctatgt cacagtggct cacaccggtc aacatgattt 6601 ggttatcccc cccaatggtt attttagatt tgattcctgg gtcaaccagt tctacacact 6661 tgcccccatg ggaaatggaa cagggcgtag acgtgcatta taatggctgg agctttcttt 6721 gctggattgg catctgacgt ccttggctcc ggacttggtt ctctgatcaa tgccggggct 6781 ggggccatca accaaaaagt tgaatttgaa aataacagaa aattgcaaca agcttccttc 6841 caatttagca gcaatctaca acaggcttcc tttcaacatg ataaagagat gctccaagca 6901 caaattgagg ccaccaaaaa gttgcaacag gaaatgatga gagttaaaca ggcaatgctc 6961 ctagagggtg gattctctga gacagatgca gcccgtgggg caatcaacgc ccccatgaca 7021 aaggctttgg actggagtgg gacaaggtac tgggctcccg atgctaggac cacaacatac 7081 aatgcaggcc acttttccac ccctcaaccc tcgggggcac tgccaggaag agctaatctt 7141 agggctgctg tccccgctcg gggctcctcc agcacatctt ctaactcttc tactgctact 7201 tctgtgtact caaatcaaac tacttcaacg agacttggtt ctacagctgg ttctggtacc 7261 agtgtctcga gcctcccgtc aactgcaagg gctaggagct gggttgagga tcaaaatagg 7321 aatttgtcac ctttcatgag gggggcccac aacatatcgt ttgtcacccc accatctagc 7381 aggtcctcta gccaaggcac agtctcaacc gtgcccaaag aagttttgga ctcctggact 7441 ggcgctttca atacgcgcag gcagcctctc ttcgctcaca ttcgtaagcg aggggagtca 7501 cgggcgtaa //