Typing tool
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Complete norovirus genomes
AB933729 | GII.4 New Orleans | ||
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GII.P4 Hunter |
ORF1: 1..5100 ORF2: 5081..6703 ORF3: 6703..7506LOCUS AB933729 7506 bp RNA linear VRL 02-SEP-2015 DEFINITION Norovirus Hu/GII.4/Fukui5/2009/JP genomic RNA, complete genome. ACCESSION AB933729 VERSION AB933729.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/Fukui5/2009/JP ORGANISM Norovirus Hu/GII.4/Fukui5/2009/JP Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Sato,H., Yokoyama,M. and Motomura,K. TITLE Identification of strong evolutionary constraints on viral capsid protein during divergent evolution of a norovirus pandemic lineage JOURNAL Unpublished REFERENCE 2 (bases 1 to 7506) AUTHORS Sato,H., Nakamura,H. and Motomura,K. TITLE Direct Submission JOURNAL Submitted (09-MAY-2014) Contact:Kazushi Motomura National Institute of Infectious Diseases, Pathogen Genomics Center; Gakuen 4-7-1, Musashi-Murayama, Tokyo 208-0011, Japan FEATURES Location/Qualifiers source 1..7506 /organism="Norovirus Hu/GII.4/Fukui5/2009/JP" /mol_type="genomic RNA" /strain="Hu/GII.4/Fukui5/2009/JP" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1498723" /country="Japan:Fukui" /collection_date="2009" CDS 1..5100 /note="contains N-terminal, NTPase, 3A, VPg, 3Cpro and 3Dpol" /codon_start=1 /product="polyprotein" /protein_id="BAS30247.1" /translation="MKMASNDASAAAVANSNNDTAKSSSDEVLSSMAVTFKRALGARP KQPPPREIPQRPPRPPTPELIKNIPPPPPNGEDDIVVSYSVKDGVSGLPDLSTVRQPE ESNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS LARVELTPLSLYWRPVYTPQYLISPNALKKLHGETFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDLIGK LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMVSGRPGIGKTHLAREV AKRIAASLTGDQRVGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSSDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEFELQGPTLTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVRTM PELKQALKNISIKKCQIVYSGSTYTLESDGKGNVKVDRVQSASVQTNNELAGALHHLR CARIRYYVRCVQEALYSIIQIAGAAFVTTRIVKRMNIQNLWSKPQVENTEETTSKDGC PKPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVSFGSGWGFWVSP SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVVTLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDYVAIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW NGESFTGKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDL ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWD STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLR EYGLKPTRPDKTEGPLAISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGS NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5081..6703 /codon_start=1 /product="VP1" /protein_id="BAS30248.1" /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHITGSRNYTMNLATQNWNSYDPTEEIPAPLGTPDFVGKIQGVL TQTTRADGSTRGHKAIVYTGSADFAPKLGRVQFATDTDNDFGANQNTKFTPVGVIQDG DTAHRNEPQQWVLPSYSGRNSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6703..7506 /codon_start=1 /product="VP2" /protein_id="BAS30249.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGHFSTPQPSGALPGRAIRAVVPARGSSSISSN SSAATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARARSWVEDQNRNLSPFMRGAHNIS FVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHVRKRGESRA" ORIGIN 1 atgaagatgg cgtctaacga cgcttccgct gccgctgttg ctaacagcaa caacgacacc 61 gcaaaatctt caagtgacga agtgctttct agcatggctg tcactttcaa acgagccctc 121 ggggcgcggc ctaaacagcc tcccccgagg gaaataccac aaagaccccc acgaccaccc 181 actccagaac tgattaaaaa catcccccct cccccaccca acggagagga tgacatagtg 241 gtttcttata gtgtcaaaga tggtgtctct ggtttgcctg atctttccac cgtcaggcaa 301 ccggaagaat ctaatacggc cttcagtgtc cctccactca atcagaggga gaatagagat 361 gctaaggagc cactgactgg aacaatcctg gaaatgtggg atggagaaat ctaccattat 421 ggcctgtatg tagagcgagg tcttgtgcta ggtgtgcaca aaccaccagc tgccatcagc 481 ctcgctaggg tcgaactaac accactttcc ttgtactgga gacctgtgta tactccccag 541 tacctcatct ctccaaacgc tctcaagaaa ctacacggag agacgttccc ctacacagcc 601 tttgacaaca actgctacgc cttttgttgt tgggtcctgg acctaaacga ctcgtggctg 661 agtaggagaa tgatccagag aacaactggc ttcttcagac cctaccaaga ttggaatagg 721 aaacccctcc ccactatgga tgactccaag ttaaagaagg tagctaacat attcctgtgt 781 gcactgtctt cgctattcac caggcctata aaagatttaa tagggaagct aaggcctctt 841 aacatcctca acatcttggc ctcatgtgat tggacttttg caggcatagt ggagtccttg 901 atactcttgg cagaactctt cggagttttc tggacacccc cagatgtgtc tgcgatgatt 961 gcccccttac tcggtgatta cgaactacaa ggacctgagg accttgcagt agagctcgtc 1021 cctgtagtga tggggggaat tggtttggtg ctaggattca ccaaagagaa gattgggaaa 1081 atgttgtcat ctgctgcatc caccttgaga gcttgtaaag atcttggtgc atatgggcta 1141 gagatcctaa agttggtcat gaagtggttc ttcccgaaga aagaggaagc aaatgaattg 1201 gctatagtaa gatccatcga ggatgcagtc ctggatctcg aggcaatcga aaacaaccat 1261 atgaccacct tgctcaaaga caaagacagt ctggcaacct acatgagaac ccttgacctt 1321 gaggaggaga aagccaggaa actctcaacc aagtctgctt cacctgacat cgtgggcaca 1381 atcaacgccc ttctggcgag aatcgctgct gcacgttctc tggtgcatcg agcgaaggag 1441 gaactttcta gcagaccaag gccggtagtg ttgatggtat caggcagacc aggaataggg 1501 aagacccacc ttgctaggga agtggctaag agaatcgcag cctcccttac aggagaccag 1561 cgtgtaggcc tcgtcccacg caatggcgtc gaccattggg atgcgtacaa gggggagagg 1621 gtcgttctat gggacgacta tggaatgagc aaccctatcc acgatgccct cagattgcaa 1681 gaactcgctg acacttgtcc cctcacccta aactgtgaca ggattgagaa caaaggaaag 1741 gtctttgaca gcgatgtcat cattatcacc actaatctgg ctaacccagc accactggac 1801 tatgtcaact ttgaagcatg ctcgaggcgc atcgacttcc ttgtgtatgc agaagcccct 1861 gaggtcgaaa aggcgaagcg tgacttccca ggtcaacccg acatgtggaa gaacgccttc 1921 agttctgatt tctcacacat aaaactaaca ttggctccac agggtggctt cgacaagaac 1981 gggaacaccc cacacgggaa gggcgtcatg aagactctca ccaccggctc ccttattgcc 2041 cgggcatcag ggttactcca tgagaggcta gatgaatttg aactacaggg cccaactctc 2101 accaccttca actttgatcg caataaagtg cttgccttta gacaacttgc tgctgaaaat 2161 aaatatgggt tgatggacac aatgaaagtt gggaggcagc tcaaggatgt cagaacaatg 2221 ccagagctca agcaagcact caagaatatt tcaatcaaga agtgccagat agtgtatagt 2281 ggtagcacct acacacttga gtctgatggc aagggcaatg tgaaggttga cagagttcaa 2341 agcgcctccg tgcagaccaa caatgagctg gctggcgccc tacaccatct aaggtgcgcc 2401 agaataagat actatgtcag gtgtgtccag gaggccctgt attccatcat ccagattgct 2461 ggggctgcat ttgtcaccac gcgcatcgtc aaacgcatga acatacaaaa cctatggtct 2521 aagccacaag tggaaaatac agaggagact actagcaagg atgggtgtcc aaaacccaaa 2581 gatgatgagg agttcgtcat ttcatccgac gacatcaaaa ctgagggcaa gaaagggaaa 2641 aacaagactg gtcgcggcaa gaagcacaca gccttctcaa gcaaaggtct cagtgatgaa 2701 gaatacgatg aatacaagag aattagagaa gaaaggaacg gtaagtactc catagaagag 2761 taccttcagg acagggacaa atactatgag gaggtggcca ttgccagggc gactgaggaa 2821 gacttctgtg aagaggagga ggccaagatc cggcaaagga tcttcaggcc aacaaggaaa 2881 caacgcaagg aggaaagagc ttctctcggt ttagttacag gttctgaaat taggaaaaga 2941 aatccagatg atttcaaacc caaggggaaa ctgtgggctg acgatgacag aagtgtggac 3001 tacaatgaga aactcagttt tgaagcccca ccaagcatct ggtcgagaat agtcagcttt 3061 ggttcaggtt gggggttctg ggtctccccc agtttgttca taacatcaac ccatgtcata 3121 ccccagggag caaaggagtt ctttggagtc cccatcaaac aaattcaggt acacaagtca 3181 ggcgaattct gtcgcttgag attcccaaaa ccaatcagga ctgatgtgac gggcatgatc 3241 ttagaagaag gtgcacccga gggcaccgtg gtcacactgc tcatcaaaag gcccactgga 3301 gaactcatgc ccctagcagc taggatgggg acccatgcaa ccatgaaaat ccaaggacgc 3361 actgttgggg gtcaaatggg catgcttctg acaggatcca acgccaaaag catggatctg 3421 ggtaccacac caggtgattg tggctgtccc tacatctaca agagaggaaa tgactatgtg 3481 gccattggag tccacacggc tgccgctcgt gggggcaaca ctgtcatatg tgccacccag 3541 gggagtgagg gagaggctac acttgaaggt ggtgacaata aagggacata ctgtggtgca 3601 ccaatcctag gcccagggag tgccccaaaa cttagcacca agaccaaatt ctggagatcg 3661 tccacagcac cactcccacc tggcacctat gaaccagcct atcttggcgg caaggacccc 3721 agagtcaagg gtggcccttc actacagcag gtcatgaggg atcagctgaa gccattcaca 3781 gagcccaggg gcaagccacc aaagccaagt gtgttggaag ctgctaagaa aaccatcatc 3841 aatgtccttg aacaaactat tgatccacct gagaaatggt cattcgcaca agcttgcgcg 3901 tcccttgaca agaccacctc cagtggccat ccgcatcaca tgcggaaaaa cgactgctgg 3961 aacggggagt ccttcacagg caagctggca gaccaggctt ccaaggccaa cctgatgttt 4021 gaagaaggga agaacatgac gccagtctat acagctgcgc ttaaggacga attagttaaa 4081 actgacaaaa tttatggcaa gatcaagaag aggcttctct ggggctcgga tttggcgacc 4141 atgatccggt gtgctcgagc attcggaggc ctaatggatg aactcaaagc gcactgtgtc 4201 acacttccca ttagagttgg tatgaatatg aatgaggatg gccccatcat cttcgagagg 4261 cactctaggt acacatacca ctatgatgct gattactctc gatgggattc aacacaacag 4321 agagccgtgt tggcagcagc tctagaaatc atggttaagt tctccccaga accacatttg 4381 gcccaggtag tcgcagaaga ccttctttct cctagcgtgg tggacgtggg tgacttcaca 4441 atatcaatta acgagggtct tccctctggg gtgccctgca cctcccaatg gaactccatc 4501 gcccactggc ttctcaccct ctgtgcgctc tctgaagtta caaacttgtc tcctgacacc 4561 atacaagcta attccctctt ctctttttat ggtgatgatg aaattgttag cacagacata 4621 aaattggacc cagaaaagtt gacagcaaag ctcagggaat acgggttaaa accaacccgt 4681 cccgacaaaa ctgaaggacc ccttgccatc tctgaagact tgaatggcct gactttcctg 4741 cggagaactg tgacccgcga cccagctggt tggtttggaa aactggagca gagttcaata 4801 ctcaggcaaa tgtactggac taggggctcc aaccatgaag acccatctga aacaatgatt 4861 ccacactccc aaaggcccat acaactgatg tccctactgg gggaggccgc actccacggc 4921 ccagcattct acagcaagat cagcaagtta gtcattgcag aactaaaaga aggtggcatg 4981 gatttttacg tgcccagaca agagccaatg ttcagatgga tgagattctc agatctgagc 5041 acgtgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgagtga 5101 cgccaaccca tctgatgggt ccacagccaa cctcgtccca gaggtcaaca atgaggttat 5161 ggctttggag cccgttgttg gtgccgctat tgcggcacct gtagcgggcc aacaaaatgt 5221 aattgacccc tggattagaa acaattttgt acaagcccct ggtggagagt tcacagtatc 5281 ccctagaaac gctccaggtg aaatactatg gagcgcgccc ttaggccctg atttgaatcc 5341 ctacctttcc catttggcca gaatgtacaa tggttatgca ggtggttttg aagtgcaggt 5401 aatcctcgcg gggaacgcgt tcaccgccgg aaaaatcata tttgcagcag tcccaccaaa 5461 tttcccaact gaaggcttga gccccagcca ggtcactatg ttcccccaca taatagtaga 5521 tgttaggcaa ttggaacctg tgttgatccc cttacccgat gttaggaata atttctatca 5581 ctacaatcaa tcaaatgacc ccaccatcaa attgatagca atgttgtata caccacttag 5641 ggctaataat gctggggacg atgtcttcac agtttcttgt cgggttctca cgagaccatc 5701 ccccgatttt gacttcatat ttttagtacc acccacagtt gagtcaagaa ctaaaccatt 5761 ctctgttcca attttaactg ttgaggagat gaccaattca agattcccca ttcctttgga 5821 aaagctgttc acgggtccca gcagtgcctt tgttgttcaa ccacaaaacg gcagatgcac 5881 gactgatggc gtgctcctag gtaccactca actgtctcct gtcaacatct gcaccttcag 5941 aggggatgtc acccatatta caggtagtcg taactacaca atgaatttgg ctactcaaaa 6001 ttggaacagt tatgacccaa cagaagaaat cccagcccct ctaggaactc cagatttcgt 6061 ggggaagatt caaggtgtgc tcacccaaac cacaagggca gatggctcga cccgcggcca 6121 caaagctata gtgtacactg ggagcgccga tttcgctcca aaactgggta gagttcaatt 6181 tgccactgac acagacaatg attttggtgc taaccaaaat acaaagttca ccccagtcgg 6241 tgtcatccag gatggtgaca ctgcccaccg aaatgaaccc caacaatggg tgctcccaag 6301 ttactcaggc agaaatagtc acaatgtgca cctggctccc gctgtagccc ccacttttcc 6361 gggtgagcaa cttctcttct tcagatccac tatgcccgga tgcagcgggt accccaacat 6421 ggatttggac tgtctgctcc cccaggaatg ggtgcagtat ttctatcaag aggcagcccc 6481 agcacaatct gatgtggctc tgctaagatt tgtgaatcca gacacaggta gggttttgtt 6541 tgagtgtaag cttcataaat caggctatgt tacagtggct cacaccggtc aacatgattt 6601 ggttatcccc cccaatggtt attttagatt tgattcctgg gtcaaccagt tctacacact 6661 tgcccccatg ggaaatggga cggggcgtag acgtgcatta taatggctgg agctttcttt 6721 gctggattgg catctgacgt ccttggctcc ggacttggtt ctctgatcaa tgccggggct 6781 ggggccatca accaaaaagt tgaatttgaa aataacagaa aattgcaaca agcttccttc 6841 caatttagca gcaatctaca acaggcttcc tttcaacatg ataaagagat gctccaagca 6901 caaattgagg ccaccaaaaa gttgcaacag gaaatgatga gagttaaaca ggcaatgctc 6961 ctagagggtg gattctctga gacagatgca gcccgtgggg caatcaacgc ccccatgaca 7021 aaggctttgg actggagtgg gacaaggtac tgggctcccg atgctaggac cacaacatac 7081 aatgcaggcc acttttccac ccctcaaccc tcgggggcac tgccaggaag agctattagg 7141 gctgttgtcc ccgctcgggg ctcctccagc atatcttcta actcttctgc tgctacttct 7201 gtgtactcaa atcaaactac ttcaacgaga cttggttcta cagctggttc tggtaccagt 7261 gtctcgagcc tcccgtcaac tgcaagggct aggagctggg ttgaggatca aaataggaat 7321 ttgtcacctt tcatgagggg ggcccacaac atatcgtttg tcaccccacc atctagcaga 7381 tcctctagcc aaggcacagt ctcaaccgtg cccaaagaaa ttttggactc ctggactggc 7441 gctttcaata cgcgcaggca gcctctcttc gctcacgttc gtaagcgagg ggagtcacgg 7501 gcgtaa //