Typing tool
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Typing tool
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Complete norovirus genomes
| AB933729 | GII.4 Apeldoorn | |
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| GII.P4 Apeldoorn |
ORF1: 1..5100
ORF2: 5081..6703
ORF3: 6703..7506
LOCUS AB933729 7506 bp RNA linear VRL 02-SEP-2015
DEFINITION Norovirus Hu/GII.4/Fukui5/2009/JP genomic RNA, complete genome.
ACCESSION AB933729
VERSION AB933729.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/Fukui5/2009/JP
ORGANISM Norovirus Hu/GII.4/Fukui5/2009/JP
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Sato,H., Yokoyama,M. and Motomura,K.
TITLE Identification of strong evolutionary constraints on viral capsid
protein during divergent evolution of a norovirus pandemic lineage
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7506)
AUTHORS Sato,H., Nakamura,H. and Motomura,K.
TITLE Direct Submission
JOURNAL Submitted (09-MAY-2014) Contact:Kazushi Motomura National Institute
of Infectious Diseases, Pathogen Genomics Center; Gakuen 4-7-1,
Musashi-Murayama, Tokyo 208-0011, Japan
FEATURES Location/Qualifiers
source 1..7506
/organism="Norovirus Hu/GII.4/Fukui5/2009/JP"
/mol_type="genomic RNA"
/strain="Hu/GII.4/Fukui5/2009/JP"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1498723"
/geo_loc_name="Japan:Fukui"
/collection_date="2009"
CDS 1..5100
/note="contains N-terminal, NTPase, 3A, VPg, 3Cpro and
3Dpol"
/codon_start=1
/product="polyprotein"
/protein_id="BAS30247.1"
/translation="MKMASNDASAAAVANSNNDTAKSSSDEVLSSMAVTFKRALGARP
KQPPPREIPQRPPRPPTPELIKNIPPPPPNGEDDIVVSYSVKDGVSGLPDLSTVRQPE
ESNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LARVELTPLSLYWRPVYTPQYLISPNALKKLHGETFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDLIGK
LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMVSGRPGIGKTHLAREV
AKRIAASLTGDQRVGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSSDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEFELQGPTLTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVRTM
PELKQALKNISIKKCQIVYSGSTYTLESDGKGNVKVDRVQSASVQTNNELAGALHHLR
CARIRYYVRCVQEALYSIIQIAGAAFVTTRIVKRMNIQNLWSKPQVENTEETTSKDGC
PKPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVSFGSGWGFWVSP
SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVAIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLR
EYGLKPTRPDKTEGPLAISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGS
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5081..6703
/codon_start=1
/product="VP1"
/protein_id="BAS30248.1"
/translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLATQNWNSYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRADGSTRGHKAIVYTGSADFAPKLGRVQFATDTDNDFGANQNTKFTPVGVIQDG
DTAHRNEPQQWVLPSYSGRNSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6703..7506
/codon_start=1
/product="VP2"
/protein_id="BAS30249.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGHFSTPQPSGALPGRAIRAVVPARGSSSISSN
SSAATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARARSWVEDQNRNLSPFMRGAHNIS
FVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHVRKRGESRA"
ORIGIN
1 atgaagatgg cgtctaacga cgcttccgct gccgctgttg ctaacagcaa caacgacacc
61 gcaaaatctt caagtgacga agtgctttct agcatggctg tcactttcaa acgagccctc
121 ggggcgcggc ctaaacagcc tcccccgagg gaaataccac aaagaccccc acgaccaccc
181 actccagaac tgattaaaaa catcccccct cccccaccca acggagagga tgacatagtg
241 gtttcttata gtgtcaaaga tggtgtctct ggtttgcctg atctttccac cgtcaggcaa
301 ccggaagaat ctaatacggc cttcagtgtc cctccactca atcagaggga gaatagagat
361 gctaaggagc cactgactgg aacaatcctg gaaatgtggg atggagaaat ctaccattat
421 ggcctgtatg tagagcgagg tcttgtgcta ggtgtgcaca aaccaccagc tgccatcagc
481 ctcgctaggg tcgaactaac accactttcc ttgtactgga gacctgtgta tactccccag
541 tacctcatct ctccaaacgc tctcaagaaa ctacacggag agacgttccc ctacacagcc
601 tttgacaaca actgctacgc cttttgttgt tgggtcctgg acctaaacga ctcgtggctg
661 agtaggagaa tgatccagag aacaactggc ttcttcagac cctaccaaga ttggaatagg
721 aaacccctcc ccactatgga tgactccaag ttaaagaagg tagctaacat attcctgtgt
781 gcactgtctt cgctattcac caggcctata aaagatttaa tagggaagct aaggcctctt
841 aacatcctca acatcttggc ctcatgtgat tggacttttg caggcatagt ggagtccttg
901 atactcttgg cagaactctt cggagttttc tggacacccc cagatgtgtc tgcgatgatt
961 gcccccttac tcggtgatta cgaactacaa ggacctgagg accttgcagt agagctcgtc
1021 cctgtagtga tggggggaat tggtttggtg ctaggattca ccaaagagaa gattgggaaa
1081 atgttgtcat ctgctgcatc caccttgaga gcttgtaaag atcttggtgc atatgggcta
1141 gagatcctaa agttggtcat gaagtggttc ttcccgaaga aagaggaagc aaatgaattg
1201 gctatagtaa gatccatcga ggatgcagtc ctggatctcg aggcaatcga aaacaaccat
1261 atgaccacct tgctcaaaga caaagacagt ctggcaacct acatgagaac ccttgacctt
1321 gaggaggaga aagccaggaa actctcaacc aagtctgctt cacctgacat cgtgggcaca
1381 atcaacgccc ttctggcgag aatcgctgct gcacgttctc tggtgcatcg agcgaaggag
1441 gaactttcta gcagaccaag gccggtagtg ttgatggtat caggcagacc aggaataggg
1501 aagacccacc ttgctaggga agtggctaag agaatcgcag cctcccttac aggagaccag
1561 cgtgtaggcc tcgtcccacg caatggcgtc gaccattggg atgcgtacaa gggggagagg
1621 gtcgttctat gggacgacta tggaatgagc aaccctatcc acgatgccct cagattgcaa
1681 gaactcgctg acacttgtcc cctcacccta aactgtgaca ggattgagaa caaaggaaag
1741 gtctttgaca gcgatgtcat cattatcacc actaatctgg ctaacccagc accactggac
1801 tatgtcaact ttgaagcatg ctcgaggcgc atcgacttcc ttgtgtatgc agaagcccct
1861 gaggtcgaaa aggcgaagcg tgacttccca ggtcaacccg acatgtggaa gaacgccttc
1921 agttctgatt tctcacacat aaaactaaca ttggctccac agggtggctt cgacaagaac
1981 gggaacaccc cacacgggaa gggcgtcatg aagactctca ccaccggctc ccttattgcc
2041 cgggcatcag ggttactcca tgagaggcta gatgaatttg aactacaggg cccaactctc
2101 accaccttca actttgatcg caataaagtg cttgccttta gacaacttgc tgctgaaaat
2161 aaatatgggt tgatggacac aatgaaagtt gggaggcagc tcaaggatgt cagaacaatg
2221 ccagagctca agcaagcact caagaatatt tcaatcaaga agtgccagat agtgtatagt
2281 ggtagcacct acacacttga gtctgatggc aagggcaatg tgaaggttga cagagttcaa
2341 agcgcctccg tgcagaccaa caatgagctg gctggcgccc tacaccatct aaggtgcgcc
2401 agaataagat actatgtcag gtgtgtccag gaggccctgt attccatcat ccagattgct
2461 ggggctgcat ttgtcaccac gcgcatcgtc aaacgcatga acatacaaaa cctatggtct
2521 aagccacaag tggaaaatac agaggagact actagcaagg atgggtgtcc aaaacccaaa
2581 gatgatgagg agttcgtcat ttcatccgac gacatcaaaa ctgagggcaa gaaagggaaa
2641 aacaagactg gtcgcggcaa gaagcacaca gccttctcaa gcaaaggtct cagtgatgaa
2701 gaatacgatg aatacaagag aattagagaa gaaaggaacg gtaagtactc catagaagag
2761 taccttcagg acagggacaa atactatgag gaggtggcca ttgccagggc gactgaggaa
2821 gacttctgtg aagaggagga ggccaagatc cggcaaagga tcttcaggcc aacaaggaaa
2881 caacgcaagg aggaaagagc ttctctcggt ttagttacag gttctgaaat taggaaaaga
2941 aatccagatg atttcaaacc caaggggaaa ctgtgggctg acgatgacag aagtgtggac
3001 tacaatgaga aactcagttt tgaagcccca ccaagcatct ggtcgagaat agtcagcttt
3061 ggttcaggtt gggggttctg ggtctccccc agtttgttca taacatcaac ccatgtcata
3121 ccccagggag caaaggagtt ctttggagtc cccatcaaac aaattcaggt acacaagtca
3181 ggcgaattct gtcgcttgag attcccaaaa ccaatcagga ctgatgtgac gggcatgatc
3241 ttagaagaag gtgcacccga gggcaccgtg gtcacactgc tcatcaaaag gcccactgga
3301 gaactcatgc ccctagcagc taggatgggg acccatgcaa ccatgaaaat ccaaggacgc
3361 actgttgggg gtcaaatggg catgcttctg acaggatcca acgccaaaag catggatctg
3421 ggtaccacac caggtgattg tggctgtccc tacatctaca agagaggaaa tgactatgtg
3481 gccattggag tccacacggc tgccgctcgt gggggcaaca ctgtcatatg tgccacccag
3541 gggagtgagg gagaggctac acttgaaggt ggtgacaata aagggacata ctgtggtgca
3601 ccaatcctag gcccagggag tgccccaaaa cttagcacca agaccaaatt ctggagatcg
3661 tccacagcac cactcccacc tggcacctat gaaccagcct atcttggcgg caaggacccc
3721 agagtcaagg gtggcccttc actacagcag gtcatgaggg atcagctgaa gccattcaca
3781 gagcccaggg gcaagccacc aaagccaagt gtgttggaag ctgctaagaa aaccatcatc
3841 aatgtccttg aacaaactat tgatccacct gagaaatggt cattcgcaca agcttgcgcg
3901 tcccttgaca agaccacctc cagtggccat ccgcatcaca tgcggaaaaa cgactgctgg
3961 aacggggagt ccttcacagg caagctggca gaccaggctt ccaaggccaa cctgatgttt
4021 gaagaaggga agaacatgac gccagtctat acagctgcgc ttaaggacga attagttaaa
4081 actgacaaaa tttatggcaa gatcaagaag aggcttctct ggggctcgga tttggcgacc
4141 atgatccggt gtgctcgagc attcggaggc ctaatggatg aactcaaagc gcactgtgtc
4201 acacttccca ttagagttgg tatgaatatg aatgaggatg gccccatcat cttcgagagg
4261 cactctaggt acacatacca ctatgatgct gattactctc gatgggattc aacacaacag
4321 agagccgtgt tggcagcagc tctagaaatc atggttaagt tctccccaga accacatttg
4381 gcccaggtag tcgcagaaga ccttctttct cctagcgtgg tggacgtggg tgacttcaca
4441 atatcaatta acgagggtct tccctctggg gtgccctgca cctcccaatg gaactccatc
4501 gcccactggc ttctcaccct ctgtgcgctc tctgaagtta caaacttgtc tcctgacacc
4561 atacaagcta attccctctt ctctttttat ggtgatgatg aaattgttag cacagacata
4621 aaattggacc cagaaaagtt gacagcaaag ctcagggaat acgggttaaa accaacccgt
4681 cccgacaaaa ctgaaggacc ccttgccatc tctgaagact tgaatggcct gactttcctg
4741 cggagaactg tgacccgcga cccagctggt tggtttggaa aactggagca gagttcaata
4801 ctcaggcaaa tgtactggac taggggctcc aaccatgaag acccatctga aacaatgatt
4861 ccacactccc aaaggcccat acaactgatg tccctactgg gggaggccgc actccacggc
4921 ccagcattct acagcaagat cagcaagtta gtcattgcag aactaaaaga aggtggcatg
4981 gatttttacg tgcccagaca agagccaatg ttcagatgga tgagattctc agatctgagc
5041 acgtgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgagtga
5101 cgccaaccca tctgatgggt ccacagccaa cctcgtccca gaggtcaaca atgaggttat
5161 ggctttggag cccgttgttg gtgccgctat tgcggcacct gtagcgggcc aacaaaatgt
5221 aattgacccc tggattagaa acaattttgt acaagcccct ggtggagagt tcacagtatc
5281 ccctagaaac gctccaggtg aaatactatg gagcgcgccc ttaggccctg atttgaatcc
5341 ctacctttcc catttggcca gaatgtacaa tggttatgca ggtggttttg aagtgcaggt
5401 aatcctcgcg gggaacgcgt tcaccgccgg aaaaatcata tttgcagcag tcccaccaaa
5461 tttcccaact gaaggcttga gccccagcca ggtcactatg ttcccccaca taatagtaga
5521 tgttaggcaa ttggaacctg tgttgatccc cttacccgat gttaggaata atttctatca
5581 ctacaatcaa tcaaatgacc ccaccatcaa attgatagca atgttgtata caccacttag
5641 ggctaataat gctggggacg atgtcttcac agtttcttgt cgggttctca cgagaccatc
5701 ccccgatttt gacttcatat ttttagtacc acccacagtt gagtcaagaa ctaaaccatt
5761 ctctgttcca attttaactg ttgaggagat gaccaattca agattcccca ttcctttgga
5821 aaagctgttc acgggtccca gcagtgcctt tgttgttcaa ccacaaaacg gcagatgcac
5881 gactgatggc gtgctcctag gtaccactca actgtctcct gtcaacatct gcaccttcag
5941 aggggatgtc acccatatta caggtagtcg taactacaca atgaatttgg ctactcaaaa
6001 ttggaacagt tatgacccaa cagaagaaat cccagcccct ctaggaactc cagatttcgt
6061 ggggaagatt caaggtgtgc tcacccaaac cacaagggca gatggctcga cccgcggcca
6121 caaagctata gtgtacactg ggagcgccga tttcgctcca aaactgggta gagttcaatt
6181 tgccactgac acagacaatg attttggtgc taaccaaaat acaaagttca ccccagtcgg
6241 tgtcatccag gatggtgaca ctgcccaccg aaatgaaccc caacaatggg tgctcccaag
6301 ttactcaggc agaaatagtc acaatgtgca cctggctccc gctgtagccc ccacttttcc
6361 gggtgagcaa cttctcttct tcagatccac tatgcccgga tgcagcgggt accccaacat
6421 ggatttggac tgtctgctcc cccaggaatg ggtgcagtat ttctatcaag aggcagcccc
6481 agcacaatct gatgtggctc tgctaagatt tgtgaatcca gacacaggta gggttttgtt
6541 tgagtgtaag cttcataaat caggctatgt tacagtggct cacaccggtc aacatgattt
6601 ggttatcccc cccaatggtt attttagatt tgattcctgg gtcaaccagt tctacacact
6661 tgcccccatg ggaaatggga cggggcgtag acgtgcatta taatggctgg agctttcttt
6721 gctggattgg catctgacgt ccttggctcc ggacttggtt ctctgatcaa tgccggggct
6781 ggggccatca accaaaaagt tgaatttgaa aataacagaa aattgcaaca agcttccttc
6841 caatttagca gcaatctaca acaggcttcc tttcaacatg ataaagagat gctccaagca
6901 caaattgagg ccaccaaaaa gttgcaacag gaaatgatga gagttaaaca ggcaatgctc
6961 ctagagggtg gattctctga gacagatgca gcccgtgggg caatcaacgc ccccatgaca
7021 aaggctttgg actggagtgg gacaaggtac tgggctcccg atgctaggac cacaacatac
7081 aatgcaggcc acttttccac ccctcaaccc tcgggggcac tgccaggaag agctattagg
7141 gctgttgtcc ccgctcgggg ctcctccagc atatcttcta actcttctgc tgctacttct
7201 gtgtactcaa atcaaactac ttcaacgaga cttggttcta cagctggttc tggtaccagt
7261 gtctcgagcc tcccgtcaac tgcaagggct aggagctggg ttgaggatca aaataggaat
7321 ttgtcacctt tcatgagggg ggcccacaac atatcgtttg tcaccccacc atctagcaga
7381 tcctctagcc aaggcacagt ctcaaccgtg cccaaagaaa ttttggactc ctggactggc
7441 gctttcaata cgcgcaggca gcctctcttc gctcacgttc gtaagcgagg ggagtcacgg
7501 gcgtaa
//