Typing tool
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Complete norovirus genomes
AB933723 | GII.4 Den Haag | ||
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GII.P4 Den Haag |
ORF1: 1..5097 ORF2: 5081..6703 ORF3: 6703..7509LOCUS AB933723 7509 bp RNA linear VRL 02-SEP-2015 DEFINITION Norovirus Hu/GII.4/Saga3/2011/JP genomic RNA, complete genome. ACCESSION AB933723 VERSION AB933723.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/Saga3/2011/JP ORGANISM Norovirus Hu/GII.4/Saga3/2011/JP Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Sato,H., Yokoyama,M. and Motomura,K. TITLE Identification of strong evolutionary constraints on viral capsid protein during divergent evolution of a norovirus pandemic lineage JOURNAL Unpublished REFERENCE 2 (bases 1 to 7509) AUTHORS Sato,H., Nakamura,H. and Motomura,K. TITLE Direct Submission JOURNAL Submitted (09-MAY-2014) Contact:Kazushi Motomura National Institute of Infectious Diseases, Pathogen Genomics Center; Gakuen 4-7-1, Musashi-Murayama, Tokyo 208-0011, Japan FEATURES Location/Qualifiers source 1..7509 /organism="Norovirus Hu/GII.4/Saga3/2011/JP" /mol_type="genomic RNA" /strain="Hu/GII.4/Saga3/2011/JP" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1498717" /country="Japan:Saga" /collection_date="2011" CDS 1..5097 /note="contains N-terminal, NTPase, 3A, VPg, 3Cpro and 3Dpol" /codon_start=1 /product="polyprotein" /protein_id="BAS30229.1" /translation="MKKASNDASAAVVANSNNDTAKSSSDKMFSSMAVTFKRALGARP KQPPPREIPQKPPRPPTPELVKKIPPPPPNGEDEVVVSYSAKDGVSGLPELSTVRQPD ETNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS LAKVELTPLSLFWRPVYTPQYLISPDTLKKLHGETFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGK LRPLNIINILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDFELQGPED LVVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVKTM PELKQALKSISIKKCQIVYSGCTYTLESDGKGNVKVDRVQSTSVQTNNELAGALHHLR CARIRYYVKCVQEALYSIIQIAGAAFVTTRIIKRVNIQDLWSKPQVENTEEATSKDGC PKPKDNEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDRYYEEVAIAKATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV TGSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGGEGEATLEGGDGKGTYCGAPILG PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKNGPSLQQVMRDQLKPFTEP RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWD STQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVMDVGDFTISINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK EYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP NHEDPSESMIPHSQRPIQLMSLLGEAALHGPTFYGKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGV" CDS 5081..6703 /codon_start=1 /product="VP1" /protein_id="BAS30230.1" /translation="MKMASNDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNSYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIASSRNYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGML TQTTKGDGSTRGHKATVYTGSAPFTPKLGSVQFSTDTENDFETHQNTKFTPVGVIQDG STTHRNEPQQWVLPSYSGRNVPNVHLAPAVAPAFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6703..7509 /codon_start=1 /product="VP2" /protein_id="BAS30231.1" /translation="MAGAFFAGLASDVLSSGLGSLINAGAGAINQKIDFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN APMTKILDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPVRTNPRTPAPARGSPSTSS NASTATSIHSNQTVSTRLGSTAGSGTNVSSLPSTARTRSWIEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRA" ORIGIN 1 atgaagaagg cgtctaacga cgcttccgct gccgttgttg ctaacagcaa caacgacacc 61 gcaaaatctt caagtgacaa aatgttttct agcatggctg tcactttcaa acgagccctc 121 ggggcgcggc ctaaacagcc ccccccgagg gaaataccac aaaaaccccc acgaccacct 181 actccagaac tggtcaaaaa gatccctccc cccccgccca acggagagga tgaagtagtg 241 gtttcttata gtgccaaaga tggtgtctcc ggtttacctg agctttccac cgttaggcaa 301 ccggacgaaa ccaatacggc tttcagtgtc cctccactca atcagaggga gaatagggat 361 gctaaggaac cactgactgg aacaattctg gaaatgtggg atggagaaat ttaccattat 421 ggcctgtatg ttgagcgagg tcttgtgctg ggtgtgcaca aaccaccagc tgccattagc 481 ctcgccaagg tcgaactaac accactctcc ttgttctgga gacctgtgta cactcctcag 541 tacctcatct ctccagacac tctcaagaaa ttacacggag aaacatttcc ctacacagcc 601 ttcgacaaca attgctatgc cttttgttgc tgggtcctgg atctaaacga ctcgtggcta 661 agtaggagaa tgatccagag aacaactggc ttcttcagac cttaccaaga ttggaatagg 721 aaacccctcc ccactatgga tgactccaaa ttaaagaagg tagctaacat attcctgtgc 781 actctgtctt cgctgttcac caggcccata aaagacataa tagggaagtt aaggcctctc 841 aacatcatca acatcctggc ttcatgtgat tggactttcg caggcatagt ggagtccttg 901 atactcttgg cagagctctt tggagtcttc tggacacccc cagatgtgtc tgcgatgatt 961 gcccccttac ttggtgattt cgagttgcaa ggacctgagg accttgtagt ggagctcgtc 1021 cctgtagtaa tggggggaat tggtttggtg ctaggattca ccaaagagaa gattggaaaa 1081 atgttgtcat ctgctgcatc caccttgaga gcttgtaaag atcttggtgc gtatgggcta 1141 gagatcctaa agttagtcat gaagtggttc ttcccgaaga aagaggaagc aaatgaactg 1201 gctatggtga gatccatcga ggatgcagtg ctggaccttg aggcaattga aaacaaccat 1261 atgactacct tgctcaaaga caaagacagc ctggcaacct atatgagaac ccttgatctc 1321 gaggaagaga aagccagaaa actctcaacc aagtctgctt cacctgacat cgtgggcaca 1381 atcaacgccc ttctggcgag aatcgccgct gcacgctccc tggtgcaccg agcgaaggag 1441 gagctctcta gcagaccaag acctgtagtc ttgatgatat caggcagacc aggaataggg 1501 aagacccacc ttgctaggga agtggctaag agaatcgcag cctccctcac aggagaccag 1561 cgtgtgggcc tcatcccacg caacggcgtt gatcactggg acgcgtacaa gggggagagg 1621 gtcgtcctat gggacgacta tggaatgagc aatcccatcc acgacgccct caggctgcaa 1681 gaactcgctg acacttgccc cctcactcta aattgtgaca ggattgagaa taaaggaaag 1741 gtctttgaca gcgatgtcat cattatcact actaacctgg ccaacccagc accactggac 1801 tatgtcaact ttgaagcgtg ctcgaggcgc attgatttcc tcgtgtatgc agaagccccc 1861 gaggtcgaaa aggcaaagcg tgacttcccg ggccaacctg acatgtggaa aaacgctttt 1921 agttctgatt tctcacacat aaaattggca ctggctccac aaggtggctt tgataagaac 1981 gggaacaccc cacatgggaa gggcgtcatg aagactctca ccactggctc cctcattgcc 2041 cgggcatcag ggctgctcca tgagagattg gatgagtttg agctacaggg cccagctctc 2101 accaccttca actttgaccg caacaaagtg cttgccttca ggcagcttgc tgctgaaaac 2161 aaatacgggt tgatggacac aatgaaggtt gggaggcagc tcaaagatgt caagactatg 2221 ccagaactta aacaagcact caagagtatc tcaatcaaga agtgccagat tgtgtatagt 2281 ggctgcacct acacacttga gtctgacggc aagggcaatg tgaaagttga cagagttcag 2341 agcacctccg ttcagaccaa caatgagctg gctggcgcct tgcaccacct gaggtgcgcc 2401 agaatcaggt actatgtcaa gtgtgttcag gaggccctgt attctatcat ccagattgct 2461 ggggctgcat ttgtcaccac gcgcatcatc aagcgtgtga acattcaaga cttatggtcc 2521 aagccacaag tggaaaacac agaggaggcc accagcaagg acgggtgccc aaaacccaaa 2581 gataatgaag agttcgtcat ttcatctgac gacattaaaa ctgagggtaa gaaagggaag 2641 aacaagactg gtcgtggcaa gaagcacaca gccttctcaa gtaaaggtct cagtgatgaa 2701 gagtatgatg agtacaagag aattagagag gaaaggaatg gtaagtactc catagaagag 2761 taccttcagg atagggacag atactacgag gaggtggcca ttgccaaggc aaccgaggaa 2821 gatttctgtg aagaggagga ggccaagatc cggcaaagga tcttcagacc aacaaggaaa 2881 caacgcaagg aagaaagagc ttctctcggt ttagtcacgg gttctgaaat caggaaaagg 2941 aacccagaag acttcaagcc taaggggaaa ctatgggctg acgatgacag aagtgtggac 3001 tacaatgaaa aactcagttt tgaggcccca ccaagcatct ggtcaaggat agtcaacttt 3061 ggctcaggtt ggggcttctg ggtctccccc agcctgttta taacatcaac ccacgtcata 3121 ccccagggcg caaaggagtt ctttggagtc cccatcaaac aaattcaggt acacaagtca 3181 ggcgaattct gtcgcttgag gttcccaaaa ccaatcagga ctgatgtgac tggcatgatc 3241 ttggaagagg gtgcgcccga aggcaccgtg gtcacactac tcatcaagag gtctactgga 3301 gagctcatgc ccctagcagc tagaatgggg acccatgcaa ccatgaaaat tcaagggcgc 3361 actgttggag gtcagatggg catgcttctg acaggatcca acgccaaaag catggatcta 3421 ggcaccacac caggtgattg cggctgcccc tacatctaca agagaggaaa tgattatgtg 3481 gtcattggag tccacacggc tgccgctcgt gggggaaaca ctgtcatatg tgccacccag 3541 gggggtgagg gggaagctac acttgaaggt ggtgacggta agggaacata ctgtggcgca 3601 ccaatcctag gcccagggag tgccccaaaa ctcagcacca aaaccaaatt ctggagatca 3661 tccacagcac cactcccacc tggcacctat gaaccagcct accttggtgg caaggacccc 3721 agagtcaaga atggcccctc gttgcagcaa gttatgaggg accagctgaa accatttaca 3781 gagcctaggg gtaagccacc aaagccaagt gtgttagaag ctgccaagaa aaccatcatc 3841 aatgtccttg aacaaacaat tgacccacct gagaaatggt cgttcgcaca agcttgcgcg 3901 tcccttgaca agaccacttc tagcggccat ccgcaccaca tgcggaaaaa cgattgctgg 3961 aatggggaat ctttcacagg caagctggca gaccaggctt ccaaggctaa cctgatgttt 4021 gaagaaggga agaacatgac cccagtctac acaggtgcac ttaaggatga attagtcaaa 4081 actgacaaaa tttatggtaa gatcaagaag aggcttctct ggggctcgga tttggcaacc 4141 atgatccggt gtgctcgagc attcggaggc ctaatggatg aactcaaagc acactgtgtc 4201 acactcccta tcagagttgg tatgaatatg aatgaggatg gccccatcat cttcgagaag 4261 cattccaggt acagatacca ctacgatgct gactactctc ggtgggattc aacacagcag 4321 agagccgtgc tggcagctgc tctagaaatc atggttaaat tctcctcaga accacatttg 4381 gctcaggtag tagcagaaga ccttctttct cctagcgtga tggacgtggg tgacttcaca 4441 atatcaatca acgagggtct tccctctggg gtgccctgca cctcccaatg gaactccatc 4501 gcccactggc ttctcactct ctgtgcactc tccgaagtca caaatttgtc cccagacatc 4561 atacaggcta attctctctt ctccttctat ggtgatgatg aaattgttag cacagacata 4621 aaattagacc cagagaagtt gacagcaaaa cttaaggaat acgggttgaa accaacccgc 4681 cctgataaaa ctgaaggacc tcttgttatt tctgaagact tagatggttt gactttcctg 4741 cggagaactg tgacccgcga cccagctggt tggtttggaa aactggagca gagctcaata 4801 ctcaggcaaa tgtactggac taggggcccc aaccatgaag acccatctga atcaatgatt 4861 ccacactctc aaagacccat acaattgatg tccttactgg gagaggccgc actccacggc 4921 ccaacattct acggtaaaat cagcaaatta gtcattgcag agttaaaaga aggtggtatg 4981 gatttttacg tgcccaggca agagccaatg ttcagatgga tgagattctc agatctgagc 5041 acgtgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtctaacga 5101 cgccaaccca tctgatgggt ccgcagccaa cctcgtccca gaggtcaaca atgaggttat 5161 ggctttggag cccgttgtcg gtgccgctat tgcggcgcct gtagcgggcc aacaaaatgt 5221 aattgacccc tggattagaa ataattttgt acaagcccct ggtggagagt tcacagtgtc 5281 ccctagaaac gctccgggtg aaatactatg gagcgcgccc ttaggccctg atctgaatcc 5341 ctacctatct catttggcca gaatgtataa tagttatgca ggtggttttg aagtgcaggt 5401 gattctcgcg gggaacgcgt tcaccgccgg aaaaattata tttgcagcag ttccaccaaa 5461 ttttccaact gaaggcttga gtcccagcca ggtcactatg ttcccccata taatagtgga 5521 tgttaggcaa ttggaacctg tgttgatccc cttacctgat gttaggaata acttctacca 5581 ctataatcag tcaaatgact ctaccattaa attgatagca atgctgtata caccacttag 5641 ggctaataat gctggggaag atgtttttac agtctcttgt cgagttctca cgaggccatc 5701 ccctgatttt gattttatat ttttggtgcc acctacagtt gagtcaagaa ctaaaccatt 5761 tactgtccca atcttaactg ttgaagaaat gaccaattca agattcccca ttcctttgga 5821 aaaattgttc acgggcccca gcagtgcctt tgttgttcaa ccacaaaatg gcagatgcac 5881 gactgatggt gtgctcttag gcaccaccca actgtctcct gtcaacatct gcaccttcag 5941 aggggatgtc acccacattg caagttctcg taattacaca atgaatttgg cttctctaaa 6001 ttggaacaat tatgacccaa cagaagaaat tccagcccct ctaggaactc cagattttgt 6061 gggaaagatc cagggtatgc tcacccaaac cacaaaggga gatggttcga cccgtggcca 6121 taaagctaca gtttacactg ggagtgcccc ctttactcca aagctgggca gtgttcaatt 6181 cagtactgac acagaaaatg attttgaaac tcaccaaaac acaaaattca ccccagtcgg 6241 tgtcatccag gatggtagca ccacccaccg aaatgaaccc caacaatggg tgctcccaag 6301 ttattcaggt agaaatgtcc ctaatgtaca cctagcccct gctgtagccc ccgctttccc 6361 gggtgaacaa cttcttttct ttaggtctac tatgcccgga tgcagcgggt atcccaacat 6421 ggatttggat tgcctactcc ctcaggagtg ggtgcagcac ttctaccaag aggcagctcc 6481 agcacaatct gatgtggctc tattgaggtt tgtgaaccca gacacgggta gggtcctatt 6541 tgagtgtaaa cttcataaat caggttatgt cacagtggct cacaccggcc agcatgattt 6601 ggtcatcccc cccaatggtt attttaggtt tgattcctgg gttaatcaat tctacacact 6661 tgcccccatg ggaaatggaa cggggcgtag acgtgcctta taatggctgg agctttcttt 6721 gctggattgg catctgatgt tcttagctct ggacttggtt ccctaatcaa tgctggggct 6781 ggggctatca accaaaagat tgattttgaa aataacagaa aattgcagca agcttccttc 6841 cagtttagca gtaatctaca acaggcttcc tttcaacatg ataaagagat gctccaagca 6901 caaattgagg ccactaaaaa gttgcaacag gaaatgatga gagtcaaaca ggcaatgctc 6961 ttagaaggtg gattttctga aacagatgca gcccgtgggg caatcaacgc ccctatgaca 7021 aagattttgg actggagcgg aacaaggtac tgggcccctg atgctaggac tacaacatat 7081 aatgcaggcc gcttttccac ccctcaacct tcgggggcac tgccagtaag aaccaatccc 7141 aggactcctg cccccgctcg gggctccccc agtacatctt ctaatgcttc cactgctact 7201 tctatacatt caaatcaaac tgtttcaacg agacttggtt ctacagctgg ttctggcacc 7261 aatgtctcga gtctcccgtc aactgcaagg actaggagct ggattgagga tcaaaacaga 7321 aacttgtcac ctttcatgcg gggggctcac aacatatcgt ttgtcacccc tccatctagc 7381 agatcctcta gccaaggcac agtctcaacc gtgcctaaag aagttttgga ctcctggact 7441 ggcgctttca atacgcgcag gcagcctctc ttcgctcaca tccgtaggcg aggggagtca 7501 cgggcgtaa //