Typing tool
|
Complete norovirus genomes
AB933676 | GII.4 Den Haag | ||
---|---|---|---|
GII.P4 Den Haag |
ORF1: 1..5094 ORF2: 5078..6700 ORF3: 6700..7506LOCUS AB933676 7506 bp RNA linear VRL 02-SEP-2015 DEFINITION Norovirus Hu/GII.4/Niigata2/2010/JP genomic RNA, complete genome. ACCESSION AB933676 VERSION AB933676.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/Niigata2/2010/JP ORGANISM Norovirus Hu/GII.4/Niigata2/2010/JP Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Sato,H., Yokoyama,M. and Motomura,K. TITLE Identification of strong evolutionary constraints on viral capsid protein during divergent evolution of a norovirus pandemic lineage JOURNAL Unpublished REFERENCE 2 (bases 1 to 7506) AUTHORS Sato,H., Nakamura,H. and Motomura,K. TITLE Direct Submission JOURNAL Submitted (09-MAY-2014) Contact:Kazushi Motomura National Institute of Infectious Diseases, Pathogen Genomics Center; Gakuen 4-7-1, Musashi-Murayama, Tokyo 208-0011, Japan FEATURES Location/Qualifiers source 1..7506 /organism="Norovirus Hu/GII.4/Niigata2/2010/JP" /mol_type="genomic RNA" /strain="Hu/GII.4/Niigata2/2010/JP" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1498670" /country="Japan:Niigata" /collection_date="2010" CDS 1..5094 /note="contains N-terminal, NTPase, 3A, VPg, 3Cpro and 3Dpol" /codon_start=1 /product="polyprotein" /protein_id="BAS30088.1" /translation="MKMASNDASAAAVANSNNDTAKSSSDKMFSSMAVTFKRALGARP QPPPREIPQRPPRPPTPELIKKIPPPPPNGEDEVVVSYSAKDGVSGLPELSTVRQPEE TNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISL AKVELTPLSLFWRPVYTPQYLISPDTLKKLHGETFPYTAFDNNCYAFCCWVLDLNDSW LSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKL RPLNIINILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDFELQGPEDL VVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPK KEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTK SASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREVA KRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCP LTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKA KRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARAS GLLHERLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVKTMP ELKQALKNISIKKCQIVYSGCTYTLESDGKGNVKVDRVQSTSVQTNNELAGALHHLRC ARIRYYVKCVQEALYSIIQIAGAAFVTTRIIKRVNIQDLWSKPQVENTEEATNKDGCP KPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK YSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVT GSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSPS LFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGT VVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDC GCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGGEGEATLEGGDSKGTYCGAPILGP GSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPR GKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCWN GESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLA TMVRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDS TQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCTS QWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKE YGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPN HEDPSESMIPHSQRPIQLMSLLGEAALHGPTFYSKISKLVIAELKEGGMDFYVPRQEP MFRWMRFSDLSTWEGDRNLAPSFVNEDGV" CDS 5078..6700 /codon_start=1 /product="VP1" /protein_id="BAS30089.1" /translation="MKMASNDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVSICTFRGDVTHIAGSRDYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGVL TQTTKGDGSTRGHKATVYTGSAPFTPKLGSVQFSTDTENDFETHQNTKFTPVGVIQDG STAHRNEPQQWVLPSYSGRNVQNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6700..7506 /codon_start=1 /product="VP2" /protein_id="BAS30090.1" /translation="MAGAFFAGLASDVLSSGLGSLINAGAGAINQKIDFENNRKLQQA SFQFSSNLQQASFQHDKEMLQVQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRNNPRTPTPARGSPSTSS SAFTATSIYSNQTVSTRLGSTAGSGTNVSSPPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV" ORIGIN 1 atgaagatgg cgtctaacga cgcttccgct gccgctgttg ctaacagcaa caacgacacc 61 gcaaaatctt caagtgacaa aatgttttct agcatggctg tcacttttaa acgagccctc 121 ggggcgcgtc ctcagccccc cccgagggaa ataccacaaa gacccccacg accacctact 181 ccagaactga tcaaaaagat ccctcctccc ccgcccaacg gagaggatga agtagtggtt 241 tcttatagtg ccaaagatgg cgtttccggt ttacctgagc tttccaccgt cagacaaccg 301 gaagaaacca atacggcctt cagtgtccct ccactcaatc agagggagaa tagggatgct 361 aaggaaccac tgactggaac aatcctggaa atgtgggatg gagaaatcta ccattatggc 421 ctgtatgttg agcgaggtct tgtgctgggt gtgcacaaac caccagctgc cattagcctc 481 gccaaggtcg aactaacacc actctccttg ttctggagac ctgtgtacac tcctcagtac 541 ctcatctctc cggacactct caagaaatta cacggagaaa cattccccta cacagccttc 601 gacaacaatt gctatgcctt ttgttgctgg gtcctggacc taaacgactc gtggctgagt 661 aggagaatga tccagagaac aactggcttc ttcagaccct accaagattg gaataggaaa 721 cccctcccca ctatggatga ttccaaattg aagaaggtag ctaacatatt cctgtgcacc 781 ctgtcttcgc tatttactag gcccataaaa gacataatag ggaagttaag gcctctcaac 841 atcatcaaca tcctggcttc atgtgattgg actttcgcag gcatagtgga gtccttgata 901 ctcttggcag agctctttgg agtcttctgg acacccccag atgtgtctgc gatgattgcc 961 cccttactcg gtgatttcga gttacaagga cctgaggacc ttgtagtaga gctcgtccct 1021 gtagtaatgg ggggaattgg tttggtgcta ggattcacca aagagaagat tggaaaaatg 1081 ttgtcatctg ccgcatctac cttgagagct tgtaaagatc ttggtgcgta tgggctagag 1141 atcctaaaat tagtcatgaa gtggtttttc ccgaagaaag aggaagcaaa tgaactggct 1201 atggtgagat ccatcgagga tgcagtactg gaccttgagg caattgaaaa caaccatatg 1261 accaccttgc tcaaagacaa agacagcctg gcaacatata tgagaaccct tgacctcgag 1321 gaagagaaag ccagaaaact ctcaaccaag tctgcttcac ccgacatcgt gggcacaatc 1381 aacgcccttc tggcgagaat cgccgctgca cgctccctgg tgcaccgagc gaaggaggag 1441 ctttccagca gaccaagacc tgtagtcttg atgatatcag gcagaccagg aatagggaag 1501 acccaccttg ctagggaagt ggctaagaga atcgcagcct ccctcacagg agaccagcgt 1561 gtaggcctca tcccacgcaa tggcgtcgat cactgggatg cgtacaaggg ggagagggtc 1621 gtcctatggg acgactatgg aatgagcaat cccatccacg acgccctcag gctgcaagaa 1681 ctcgctgaca cttgccccct cactctaaat tgtgacagga ttgagaataa aggaaaggtc 1741 ttcgacagcg atgtcattat catcactact aacctggcca acccagcacc actggactat 1801 gtcaactttg aagcgtgctc gaggcgcatc gatttcctcg tgtatgcaga agcccccgag 1861 gtcgaaaagg caaagcgtga cttcccgggc caacctgata tgtggaaaaa cgctttcagt 1921 tctgatttct cacacataaa attggcactg gctccacaag gtggttttga taagaacggg 1981 aacaccccac acgggaaggg cgtcatgaag actctcacca ctggctccct cattgcccga 2041 gcatcagggc tgctccatga gaggttggat gagtttgaac tacagggccc agctcttacc 2101 accttcaact ttgaccgcaa caaagtgctt gcctttaggc agcttgctgc tgaaaacaaa 2161 tacgggttga tggacacaat gaaagttggg aggcagctca aggatgtcaa aaccatgcca 2221 gaacttaaac aagcactcaa gaatatctca atcaagaagt gccagattgt gtatagtggt 2281 tgcacctaca cacttgagtc tgatggcaag ggcaatgtga aagttgacag agttcagagc 2341 acctccgttc agaccaacaa tgagctggct ggcgccctgc accatttaag gtgcgccaga 2401 atcaggtact atgtcaagtg tgttcaggag gccctgtatt ctatcatcca gattgctggg 2461 gctgcatttg tcaccacgcg catcattaag cgcgtgaaca ttcaagactt gtggtccaag 2521 ccacaagtgg aaaacacaga ggaggccacc aacaaggacg ggtgcccaaa acccaaagat 2581 gatgaggagt tcgtcatttc atctgacgac attaaaactg agggtaagaa agggaagaac 2641 aagactggcc gtggcaagaa gcacacagcc ttctcaagta aaggtctcag tgatgaagag 2701 tatgatgagt acaagagaat tagagaggaa aggaatggca agtactccat agaagagtac 2761 cttcaggaca gggacaaata ctatgaggag gtggccattg ccagggcgac cgaggaagac 2821 ttctgtgaag aggaggaggc caagatccgg caaaggatct tcagaccaac aaggaaacaa 2881 cgcaaggaag aaagagcttc tctcggttta gtcacaggtt ctgaaattag gaagaggaac 2941 ccagaagact tcaagcctaa ggggaaacta tgggctgacg atgacagaag tgtggactac 3001 aatgaaaaac tcagctttga ggccccacca agcatctggt caaggatagt caactttggc 3061 tcaggttggg gcttctgggt ctcccccagc ctgttcataa catcaaccca cgtcataccc 3121 cagggcgcaa aggagttctt tggagtcccc atcaaacaaa ttcaggtaca caagtcaggc 3181 gaattctgtc gcttgaggtt cccaaagcca atcaggactg atgtaactgg catgatcttg 3241 gaagaaggtg cgcccgaagg caccgtggtc acactactca tcaaaaggtc tactggagaa 3301 ctcatgcccc tagcagctag gatggggacc catgcaacca tgaaaattca agggcgcact 3361 gttggaggtc agatgggcat gcttctgaca ggatccaacg ccaaaagcat ggatctgggc 3421 accacaccag gtgattgcgg ctgtccctac atctacaaga gaggaaatga ctatgtggtc 3481 attggagtcc acacggctgc cgctcgtggg ggaaacactg tcatatgtgc cacccaggga 3541 ggtgaggggg aagctacact tgaaggtggt gacagtaagg gaacatactg tggtgcacca 3601 atcctaggcc cagggagtgc cccaaaactt agcaccaaaa ccaaattctg gagatcatcc 3661 acagcaccac tcccacctgg cacctatgaa ccagcctacc ttggtggcaa ggaccccaga 3721 gtcaagggtg gcccctcgtt gcagcaagtc atgagggacc agctgaaacc atttacagag 3781 cctaggggta agccaccaaa gccaagtgtg ttagaagctg ccaagaaaac catcatcaat 3841 gtccttgaac aaacaattga cccacctgag aagtggtcgt tcgcacaagc ttgcgcgtcc 3901 cttgacaaga ccacttctag cggccatccg caccacatgc ggaaaaacga ctgctggaac 3961 ggggaatcct tcacaggcaa gctggcagac caggcttcta aggccaacct gatgtttgaa 4021 gaagggaaga acatgacccc agtctacaca ggtgcactta aggatgaatt agtcaaaact 4081 gacaagattt atggtaagat caagaagagg cttctctggg gctcggattt ggcaaccatg 4141 gtccggtgtg ctcgagcatt cggaggccta atggatgaac tcaaagcaca ctgtgtcaca 4201 cttcctatca gagttggtat gaatatgaat gaggatggcc ccatcatctt cgagaagcat 4261 tccaggtaca ggtaccacta tgatgctgat tactctcggt gggattcaac acaacagaga 4321 gccgtgctgg cagccgctct agaaatcatg gttaaattct cctcagaacc acatttggct 4381 caggtagtag cagaagacct tctttctcct agcgtggtgg atgtgggtga cttcacaata 4441 tcaatcaatg agggcctccc ctctggggtg ccctgcacct cccaatggaa ctccatcgcc 4501 cactggcttc tcactctctg tgcactctcc gaagttacaa atttgtcccc agacatcata 4561 caggctaatt ctctcttctc cttctatggt gatgatgaaa ttgttagtac agacataaaa 4621 ttggacccag agaagttgac agcaaagctt aaggaatacg ggctgaaacc aacccgccct 4681 gataaaactg aaggacctct tgttatttct gaagacttag atggtttgac tttcctgcgg 4741 agaactgtga cccgcgaccc agctggttgg tttggaaaac tggagcagag ttcaatactc 4801 aggcaaatgt actggactag gggccccaac catgaagatc catctgaatc aatgattcca 4861 cactctcaaa gacccataca attgatgtcc ttactgggag aggccgcact ccacggccca 4921 acattctaca gcaaaatcag caaattagtc attgcagaac taaaagaagg tggtatggat 4981 ttttacgtgc ccaggcaaga gccaatgttc agatggatga gattctcaga tctgagcacg 5041 tgggagggcg atcgcaatct ggctcccagt tttgtgaatg aagatggcgt ctaatgacgc 5101 caacccatct gatgggtccg cagccaacct cgtcccagag gtcaacaatg aggttatggc 5161 tttggagccc gttgtcggtg ccgctattgc ggcgcctgta gcgggccaac aaaatgtgat 5221 tgacccctgg attagaaata attttgtaca agcccctggt ggagaattca cagtatcccc 5281 tagaaatgct ccaggtgaaa tactatggag cgcgccctta ggccctgatc tgaatcccta 5341 cctatcccat ttggccagaa tgtataatgg ttatgcaggt ggttttgaag tgcaggtgat 5401 cctcgcgggg aacgcgttca ccgccggaaa aattatattt gcagctgtcc caccaaattt 5461 tccaactgaa ggcttgagtc ccagccaggt cactatgttt ccccacataa tagtggatgt 5521 taggcaattg gaacctgtgt tgatcccctt acctgatgtt aggaataact tctaccacta 5581 taatcagtca aatgattcta ccattaaatt gatagcaatg ctgtatacac cacttagggc 5641 taataatgct ggggatgatg tcttcacagt ctcttgtcga gtcctcacga ggccatcccc 5701 tgattttgac tttatatttt tggtgccacc tacagttgag tcaagaacta aaccatttac 5761 tgtcccaatc ttaactgttg aagaaatgac caattcaaga ttccccattc ctttggaaaa 5821 attgtttacg ggtcccagca gtgcctttgt tgttcaacca caaaatggca gatgcacgac 5881 tgatggcgtg ctcttaggca ccacccaact gtctcctgtc agcatctgca ccttcagagg 5941 ggatgtcacc cacattgcag gttctcgtga ttacacaatg aatttggctt ctctaaattg 6001 gaacaactat gacccaacag aagaaattcc agcccctcta ggaaccccag atttcgtggg 6061 aaagatccaa ggtgtgctca ctcaaaccac aaagggagat ggttcgaccc gtggccataa 6121 agctacagtt tacactggga gtgccccctt tactccaaag ctgggcagtg ttcaattcag 6181 tactgataca gaaaatgatt ttgaaactca ccaaaacaca aaattcaccc cagtcggtgt 6241 catccaggat ggtagcaccg cccaccgaaa tgaaccccaa caatgggtgc tcccaagtta 6301 ttcaggtaga aatgtccaaa atgtacacct agcccctgct gtagccccca cgtttccggg 6361 tgaacaactt cttttcttta ggtccactat gcccggatgc agcgggtatc ccaacatgga 6421 tttggattgc ctactccccc aggagtgggt gcagcacttc taccaagagg cagctccagc 6481 acaatctgat gtggctctat tgagatttgt gaatccagac acgggtaggg tcctgtttga 6541 gtgcaagctt cataaatcag gctatgtcac agtggcccac accggccagc atgatttggt 6601 catccccccc aatggttatt ttaggtttga ttcctgggtt aatcaattct acacacttgc 6661 ccccatggga aatggaacgg ggcgtagacg tgctttataa tggctggagc tttctttgct 6721 ggattggcat ctgatgtcct tagctctgga cttggttccc taatcaatgc tggggctggg 6781 gctatcaacc aaaagatcga ttttgaaaat aacagaaaat tgcagcaagc ttccttccag 6841 tttagcagta atctacaaca ggcttccttt caacatgata aagagatgct ccaagtacaa 6901 attgaggcca ctaaaaagtt gcaacaggaa atgatgaaag ttaaacaggc aatgctttta 6961 gaaggtggat tctctgaaac agatgcagcc cgtggggcaa ttaacgcccc tatgacaaag 7021 gctttggact ggagcgggac aaggtactgg gcccctgatg ctaggactac aacatacaat 7081 gcaggccgtt tttccacccc tcaaccttcg ggggcactgc caggaagaaa caatcctagg 7141 actcctaccc ccgctcgggg ctcccccagc acatcttcta gtgcttttac tgctacttct 7201 atatattcaa atcaaacagt ttcaacgaga cttggttcta cagcaggttc tggcaccaat 7261 gtctcgagtc ccccgtcaac tgcaaggact aggagttggg ttgaggatca aaacagaaat 7321 ttgtcacctt tcatgagggg ggctcacaac atatcgtttg tcaccccacc atctagcaga 7381 tcctctagcc aaggcacagt ctcaaccgtg cctaaagaag ttttggactc ctggactggc 7441 gctttcaaca cgcgcaggca gcctctcttc gctcacattc gtaggcgagg ggagtcacgg 7501 gtgtaa //