Typing tool
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Complete norovirus genomes
AB933655 | GII.4 Den Haag | ||
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GII.P4 Den Haag |
ORF1: 1..5100 ORF2: 5081..6703 ORF3: 6703..7509LOCUS AB933655 7509 bp RNA linear VRL 02-SEP-2015 DEFINITION Norovirus Hu/GII.4/Shimane2/2009/JP genomic RNA, complete genome. ACCESSION AB933655 VERSION AB933655.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/Shimane2/2009/JP ORGANISM Norovirus Hu/GII.4/Shimane2/2009/JP Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Sato,H., Yokoyama,M. and Motomura,K. TITLE Identification of strong evolutionary constraints on viral capsid protein during divergent evolution of a norovirus pandemic lineage JOURNAL Unpublished REFERENCE 2 (bases 1 to 7509) AUTHORS Sato,H., Nakamura,H. and Motomura,K. TITLE Direct Submission JOURNAL Submitted (09-MAY-2014) Contact:Kazushi Motomura National Institute of Infectious Diseases, Pathogen Genomics Center; Gakuen 4-7-1, Musashi-Murayama, Tokyo 208-0011, Japan FEATURES Location/Qualifiers source 1..7509 /organism="Norovirus Hu/GII.4/Shimane2/2009/JP" /mol_type="genomic RNA" /strain="Hu/GII.4/Shimane2/2009/JP" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1498649" /country="Japan:Shimane" /collection_date="2009" CDS 1..5100 /note="contains N-terminal, NTPase, 3A, VPg, 3Cpro and 3Dpol" /codon_start=1 /product="polyprotein" /protein_id="BAS30025.1" /translation="MKMASNDASAAAVADSNNDTAKSSNDRMFSNMAVTLKRALGARP KQPPPREIPQRPPRPPTPELVKKIPPPPPNGEDEVVVSYSARDGVSGLPELSTVRQPE ETNTAFSVPPLNQRENRDAKEPLTGAILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS LAKVELTPLSLFWRPVYTPQYLISPDTLKKLHGETFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK LRPLNIINILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDFELQGPED LVVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVKTM PELKQALKNISIKKCQIVYSGCTYTLESDGKGSVKVDRVQSTSVQTNNELVGALHHLR CARIRYYVKCVQEALYSIIQIAGAAFVTTRIIKRVNIQDLWSKPQVENTEEATSKDGC PKPKDDEEFVISSDDIKSEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV TGSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGGEGEATLEGGDSKGTYCGAPILG PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACTSLDKTTSSGHPHHMRKNDCW NGESFTGKLADQASKANLMFEEGKSMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL ATMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWD STQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK EYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP NHEDPSESMIPHSQRPIQLMSLLGEAALHGPTFYSKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPNFVNEDGVE" CDS 5081..6703 /codon_start=1 /product="VP1" /protein_id="BAS30026.1" /translation="MKMASNDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIAGSRNYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGVL TQTTKGDGSTRGHKATVYTGSADFTPKLGSVQFGTDTENDFETHQNTKFTPVGVIQDG STTHRNEPQQWVLPSYSGRNVHNVHLAPAVAPNFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6703..7509 /codon_start=1 /product="VP2" /protein_id="BAS30027.1" /translation="MAGAFFAGLASDVLSSGLGSLINAGAGAINQKIDFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKVLDWSGTRYWAPDARTTTYNAGRFSTPQPSGALLGRINPRTPTPARGSPSTSS NASTATSVYSNQTVSTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 atgaagatgg cgtctaacga cgcttccgct gccgctgttg ctgacagcaa caacgacacc 61 gcaaaatctt caaatgacag aatgttttct aacatggctg tcactcttaa acgagccctc 121 ggggcgcggc ctaaacagcc tcccccgagg gaaataccac aaagaccccc acgaccaccc 181 actccagaac tggtcaaaaa gatccctcct cccccgccca acggagagga tgaagtagtg 241 gtttcttata gcgccagaga tggtgtttcc ggtctgcctg agctttccac cgtcaggcaa 301 ccggaagaaa ccaatacggc cttcagtgtc cctccactca atcagaggga gaatagggat 361 gctaaggaac cactgactgg agcaattctg gaaatgtggg atggagaaat ttaccattat 421 ggcctgtatg ttgagcgagg tcttgtgctg ggtgtacaca aaccaccagc tgccattagc 481 ctcgccaagg tcgaactaac accactctcc ttgttctgga ggcctgtgta cactcctcag 541 tacctcatct ctccagacac tctcaagaaa ttgcacggag aaacatttcc ctacacagcc 601 tttgacaaca attgctatgc cttttgttgc tgggtcctgg atctaaacga ctcgtggctg 661 agtaggagaa tgatccagag aacaactggc ttcttcagac cctaccaaga ttggaatagg 721 aaacccctcc ccactatgga tgattccaaa ttaaagaagg tggctaacat attcctgtgc 781 gccctgtctt cgctattcac caggcccata aaagacataa taggaaagtt aaggcctctc 841 aacatcatca acatcctggc ttcatgtgat tggactttcg caggcatagt ggagtccttg 901 atactcttgg cagagctctt tggagtcttc tggacacccc cagatgtgtc tgcgatgatc 961 gcccccttac tcggtgattt tgagttacaa ggacctgagg accttgtagt ggagctcgtc 1021 cctgtagtaa tgggggggat tggtttggtg ctaggattca ccaaagagaa gattggaaaa 1081 atgttgtcat ctgctgcatc caccttgaga gcttgtaaag accttggtgc atatgggcta 1141 gagatcctaa agttagtcat gaagtggttc ttcccgaaga aagaggaagc gaatgaactg 1201 gctatggtga gatccatcga ggatgcagtg ctggaccttg aggcaattga aaacaaccat 1261 atgaccaccc tgctcaaaga caaagacagc ctggcaacct acatgagaac ccttgacctc 1321 gaggaagaga aagccagaaa actctcaacc aagtctgctt cacctgacat cgtgggcaca 1381 atcaacgccc ttctagcgag aatcgccgca gcacgctccc tagtgcaccg agcgaaagag 1441 gagctttcca gcagaccaag acctgtagtc ttgatgatat caggtaggcc aggaataggg 1501 aagacccacc ttgctaggga agtggctaag agaatcgcag cctccctcac aggagaccag 1561 cgtgtaggcc tcatcccacg caatggcgtt gatcactggg atgcgtacaa gggggagagg 1621 gtcgtcctgt gggacgacta tggaatgagc aatcccatcc acgacgccct caggctgcaa 1681 gaacttgctg acacttgccc cctcactcta aattgtgaca ggattgagaa taaaggaaag 1741 gtctttgaca gcgatgtcat cattatcact actaatctgg ccaacccagc accactggac 1801 tatgtcaact ttgaagcgtg ctcgaggcgc atcgatttcc tcgtgtatgc agaagccccc 1861 gaggtcgaaa aggcgaagcg cgactttccg ggtcaacctg acatgtggaa aaacgctttt 1921 agttctgatt tctcacacat aaaattggca ttggctccac aaggtggctt tgataagaac 1981 gggaacaccc cacacgggaa gggcgtcatg aagactctca ccactggctc cctcattgcc 2041 cgggcatcag gactgctcca tgagagattg gatgagtttg aactacaggg cccagctctt 2101 accaccttca actttgaccg caacaaagtg ctagccttca ggcagcttgc tgctgaaaac 2161 aagtatgggt tgatggacac aatgaaagtt gggaggcagc tcaaggatgt caaaaccatg 2221 ccagaactta aacaagcact caagaatatc tcaatcaaga agtgccagat tgtatacagt 2281 ggttgcacct acacacttga gtctgatggc aagggtagtg tgaaagttga cagagttcag 2341 agtacctccg ttcagaccaa caatgagctg gttggcgccc tgcaccatct aaggtgcgcc 2401 agaatcaggt actatgtcaa gtgtgttcag gaggctctgt attctatcat ccagattgct 2461 ggggctgcat ttgtcactac gcgcatcatt aagcgtgtga acattcaaga cttatggtcc 2521 aagccacaag tggaaaacac agaggaggct accagcaagg acgggtgccc aaaacccaaa 2581 gatgatgagg agttcgtcat ttcatctgac gacattaaat ctgagggtaa gaaagggaag 2641 aacaagactg gccgtggcaa gaagcacaca gccttttcaa gtaaaggtct cagtgatgaa 2701 gagtatgatg agtacaagag aattagagag gaaagaaatg gcaagtactc catagaagag 2761 tacctccagg acagggacaa atactatgag gaggtggcca ttgccagggc gaccgaggaa 2821 gacttctgtg aagaggaaga ggccaagatc cggcaaagga tcttcagacc aacaagaaaa 2881 caacgcaagg aagaaagagc ttctctcggt ttagtcacag gttctgaaat taggaagaga 2941 aacccagaag acttcaaacc taaggggaaa ctatgggctg acgatgacag aagtgtggac 3001 tacaatgaaa aactcagttt tgaggcccca ccaagcatct ggtcaagaat agtcaacttt 3061 ggctcaggtt ggggcttctg ggtttcccct agcctgttca taacatcaac ccacgtcata 3121 ccccagggcg caaaggagtt ctttggcgtc cccatcaaac aaattcaggt gcacaagtca 3181 ggcgaattct gtcgcttgag gttcccaaaa ccaatcagga ctgatgtgac tggcatgatc 3241 ttggaagaag gtgcacccga aggcacggtg gtcacactac tcatcaaaag gtctactgga 3301 gaactcatgc ccctagcagc cagaatgggg acccatgcaa ccatgaaaat tcaagggcgc 3361 actgttggag gtcagatggg catgcttctg acaggatcca acgccaaaag catggattta 3421 ggcaccacac caggtgattg cggctgtccc tacatctata agaggggaaa cgactatgtg 3481 gtcataggag tccacacagc tgccgctcgt gggggaaaca ctgtcatatg tgccacccag 3541 gggggtgagg gggaagctac acttgaaggt ggtgacagta agggaacata ctgtggtgca 3601 ccaatcctag gcccagggag tgccccaaaa cttagcacta aaaccaaatt ctggagatca 3661 tccacagcac cactcccacc tggcacctat gaaccagcct accttggtgg caaagacccc 3721 agagtcaagg gtggcccctc gttgcagcaa gtcatgaggg accagctgaa accatttaca 3781 gagcctaggg gtaagccacc aaagccaagt gtgttagaag ctgccaagaa aaccatcatc 3841 aatgtcctcg aacagacaat tgacccacct gagaaatggt cgtttgcaca agcttgcacg 3901 tcccttgaca agaccacttc tagcggccat ccgcaccaca tgcggaaaaa cgactgctgg 3961 aacggggaat ccttcacagg caagctggca gaccaggctt ccaaggccaa cctgatgttt 4021 gaagaaggga agagcatgac cccagtctac acaggtgcac ttaaggatga attagttaaa 4081 actgacaaga tttatggtaa gatcaagaag aggcttctct ggggctcgga tttagcaacc 4141 atgattcggt gtgctcgggc attcggaggc ctgatggatg aactcaaagc acactgcgtc 4201 acacttcctg tcagagttgg tatgaatatg aatgaggatg gccccatcat cttcgagaag 4261 cattctaggt acagatacca ctatgatgct gattactctc ggtgggattc aacacaacag 4321 agagccgtgc tggcagctgc tctagaaatc atggttaaat tctcctcaga accacatttg 4381 gctcaggtag tagcagaaga ccttctctct cctagcgtgg tggatgtggg tgacttcaca 4441 atatcaatca atgagggtct tccctctggg gtgccctgca cctcccaatg gaactccatc 4501 gcccactggc ttctcactct ctgtgcactc tccgaagtca caaacttgtc cccagacatc 4561 atacaggcta attctctctt ctccttctat ggtgatgatg aaattgttag cacagatata 4621 aaattagacc cagagaaatt gacagcaaag cttaaagaat atgggttgaa accaacccgc 4681 cctgacaaaa ctgaaggacc tcttgttatt tctgaagact tagacggttt gactttcctg 4741 cggagaactg tgacccgcga cccagctggt tggtttggga agctggagca gagctcaata 4801 ctcaggcaaa tgtactggac taggggcccc aaccatgaag acccatctga atcaatgatc 4861 ccacactctc aaagacccat acaattgatg tccttactgg gagaggccgc actccacggc 4921 ccaacattct acagtaaaat cagcaaatta gtcattgcag agctaaaaga aggtggcatg 4981 gatttttacg tgcccaggca agagccaatg ttcagatgga tgagattctc ggatctgagc 5041 acgtgggagg gcgatcgcaa tctggctccc aattttgtga atgaagatgg cgtcgaatga 5101 cgccaaccca tctgatgggt ccgcagccaa cctcgtccca gaggtcaaca atgaggttat 5161 ggctttggag cccgttgtcg gtgccgctat tgcggcgcct gtagcgggcc aacaaaatgt 5221 gattgacccc tggattagaa ataattttgt acaagcccct ggtggagagt tcacagtatc 5281 ccctagaaac gctccaggtg aaatactatg gagcgcgccc ttaggccctg atttgaatcc 5341 ctacctatct catttggcca gaatgtataa tggttatgca ggtggttttg aagtgcaagt 5401 gatcctcgcg gggaacgcgt tcaccgccgg gaaaattata tttgcagcag tcccaccaaa 5461 ttttccaact gaaggtttga gtcccagcca ggttactatg ttcccccaca taatagtaga 5521 tgttaggcaa ttggaacctg tgttgatccc tttacctgat gttaggaata acttctacca 5581 ctataatcag tcaaatgatt ctaccattaa attgatagca atgctgtaca caccacttag 5641 ggccaataat gctggggatg atgtcttcac agtctcttgt cgagtcctca cgagaccatc 5701 ccctgatttt gattttatat ttctggtgcc acccacagtt gagtcaagaa ccaagccatt 5761 cactgtccca atcttaactg ttgaagaaat gaccaattca agattcccca ttcctttgga 5821 aaaactgttc acgggtccca gcagtgcctt tgttgttcaa ccacaaaatg gcagatgcac 5881 tactgatggc gtgctcttag gcaccaccca actgtctcct gtcaacatct gcaccttcag 5941 aggagatgtc acccacattg cgggttcccg caattacaca atgaatttgg cctctctaaa 6001 ttggaacaat tacgacccaa cagaagaaat tccagccccc ctgggaactc cagattttgt 6061 gggaaagatc caaggtgtgc tcactcaaac cacaaaggga gacggctcga cccggggcca 6121 taaagctaca gtttacactg ggagtgccga ctttactcca aagctgggca gtgtccaatt 6181 tggtactgat acagaaaatg actttgaaac tcaccaaaac acaaaattca ccccagtagg 6241 tgtcatccag gatggtagca ccacccaccg aaatgaaccc caacaatggg tgctcccaag 6301 ttattcaggt agaaatgtcc ataatgtaca cctagcccct gctgtagctc ccaattttcc 6361 gggtgaacaa cttcttttct tcaggtccac tatgcccgga tgtagcgggt atcccaacat 6421 ggatttggat tgcctgctcc cccaggagtg ggtgcagcac ttctaccaag aggcagctcc 6481 agcacaatct gatgtggctc tattgagatt tgtgaatcca gacacgggta gggtcctgtt 6541 tgagtgcaaa ctccataaat caggctatgt cacagtggct cacaccggcc aacatgattt 6601 ggtcatcccc cccaatggct attttaggtt tgattcctgg gttaaccaat tctacacact 6661 tgcccccatg ggaaatggaa cggggcgtag acgtgcttta taatggctgg agctttcttt 6721 gctggattgg catctgatgt ccttagctct ggacttggtt ccctaatcaa tgctggggct 6781 ggggctatca accaaaagat tgattttgaa aataatagaa aattgcagca agcttccttc 6841 cagtttagca gtaacctaca acaggcttcc tttcaacacg ataaagagat gctccaagca 6901 caaattgagg ccactaaaaa gttgcaacaa gaaatgatga aagtcaaaca ggcaatgctc 6961 ttagaaggtg gattctctga aacagatgca gcccgtgggg caatcaacgc ccccatgaca 7021 aaggttttgg actggagcgg aacaaggtac tgggcccctg atgctaggac tacaacatac 7081 aatgcaggcc gcttttccac ccctcaacct tcgggggcac tgctaggaag aatcaatccc 7141 aggactccca cccccgctcg gggctcccct agcacatctt ccaatgcttc tactgctact 7201 tctgtatatt caaatcaaac tgtttcaacg agacttggtt ctacagctgg ttctggcacc 7261 aatgtctcga gtcttccgtc aactgcaagg actaggagtt gggttgagga tcaaaacaga 7321 aatttgtcac ccttcatgag gggggctcac aacatatcgt ttgtcacccc accatctagc 7381 agatcctcca gccaaggcac agtctcaacc gtgcctaaag aaattttgga ctcctggact 7441 ggcgctttca acacgcgcag gcagcctctc ttcgctcaca ttcgtaagcg aggggagtca 7501 cgggtgtaa //