Human calicivirus
Typing tool

Complete norovirus genomes

AB684728  GII.ancestral
 GII.P40

Length: 3,287 | 3 CDS 

ORF1: 1..872
ORF2: 853..2478
ORF3: 2478..3242

LOCUS       AB684728                3287 bp    RNA     linear   VRL 07-JAN-2023
DEFINITION  Norovirus Hu/GII/68-4/Tokyo/JPN RdRp, VP1, genes for non structural
            protein, capid protein VP1, partial and complete cds.
ACCESSION   AB684728
VERSION     AB684728.2
KEYWORDS    .
SOURCE      Norovirus Hu/GII/68-4/Tokyo/JPN
  ORGANISM  Norovirus Hu/GII/68-4/Tokyo/JPN
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE   1
  AUTHORS   Mori,K., Nagano,M., Kimoto,K., Somura,Y., Akiba,T., Hayashi,Y.,
            Sadamasu,K. and Kai,A.
  TITLE     Detection of Enteric Viruses in Fecal Specimens from Nonbacterial
            Foodborne Gastroenteritis Outbreaks in Tokyo, Japan between 1966
            and 1983
  JOURNAL   Jpn J Infect Dis 70 (2), 143-151 (2017)
   PUBMED   27357976
  REMARK    DOI:10.7883/yoken.JJID.2015.456
REFERENCE   2
  AUTHORS   Mori,K., Nagano,M., Yaoita,Y., Asakura,H., Suzuki,A., Isogai,M.,
            Fujiwara,T., Nagashima,M., Suzuki,J., Tohma,K. and Sadamasu,K.
  TITLE     Genetic characteristics of archival noroviruses detected from the
            1970s to the 1990s
  JOURNAL   Arch Virol 167 (12), 2723-2727 (2022)
   PUBMED   36087133
  REMARK    DOI:10.1007/s00705-022-05595-4
REFERENCE   3  (bases 1 to 3287)
  AUTHORS   Mori,K., Nagano,M., Akiba,T., Hayashi,Y. and Kai,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-NOV-2011) Contact:Kohji Mori Tokyo Metropolitan
            Institute of Public Health, Department of Microbiology; 3-24-1
            Hyakunin-cho, Shinjuku, Tokyo 169-0073, Japan
COMMENT     On Sep 23, 2022 this sequence version replaced AB684728.1.
FEATURES             Location/Qualifiers
     source          1..3287
                     /organism="Norovirus Hu/GII/68-4/Tokyo/JPN"
                     /mol_type="genomic RNA"
                     /strain="Hu/GII/68-4/Tokyo/JPN"
                     /isolation_source="human feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:1117802"
                     /country="Japan:Tokyo"
     gene            <1..872
                     /gene="RdRp"
     CDS             <1..872
                     /gene="RdRp"
                     /codon_start=3
                     /product="non structural protein"
                     /protein_id="BAV21712.1"
                     /translation="NEDGPIIFEKHSKYKYHYDADYSRWDSTQQRHIWGAALEIMVRF
                     SAEPELAQIVAEDLLAPSIMDVGDFKITINEGLPSGVPCTSQWNSISHWLITLCAISE
                     VSGLSPDVVQTNSCFSFYGDDEIVSTDIKLDPMKLTNKLKEYGLIPTRPDKTEGPLII
                     KESLEGLTFLRREVCRDPAGWFGKLDQSSIMRQLYWTKGPNHDDPNETMIPHSQRPIQ
                     LMSLLGEAALHGPAFYKKVSKLVITELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDR
                     NLAPEGVNEDGVE"
     gene            853..2478
                     /gene="VP1"
     CDS             853..2478
                     /gene="VP1"
                     /note="structural protein"
                     /codon_start=1
                     /product="capid protein VP1"
                     /protein_id="BAV21713.2"
                     /translation="MKMASNDAAPSNDGAAGLVPEINNEALALEPVAGGAIAAPLTGQ
                     TNFIDPWIRNNYVQAPNGEFTVSPRNSPGEILLNLELGPELNPFLAHLSRMYNGYAGG
                     VDVQVIMAGTFFAAGKILFAAVPPHFPVENLSPPQITMFPHIIVDVRTLEPINIPLPD
                     GRSFFSHYSQNNEPRMRVVAMLYTPLRSNGSAEDVFTVSCKVLTKPSVDFEFNYLVPP
                     TVESRTKPFTIPILTIGEMTNSRFPVAIDMLHTSPTDGISVQPKNGRCTLDGELQGTT
                     PLVATNICAFRGSIAGHEGQSDQHLWHFRVTNPNGTPFDPTEDVPAPLGTPDFKGELY
                     GVIAQRNRIDPGQTQPTNRSHEGVISTRSPKFTPKLGSVMIGTWNTDDIQDQPSKFIP
                     IGLTGSDNFQQWELPDYSGALTLNMGLAPSIFPTYPGEQILFFRSYIPLKGGYGNPFI
                     DCLLPQEWISHFYQESAPSQTDVALIRYVNPDTGRVLFEAKLHRQGFITVAKTGDSPI
                     NVPANGYFRFDSWVNQFYSLAPMGTGNGRRRIQ"
     gene            2478..3242
                     /gene="VP2"
     CDS             2478..3242
                     /gene="VP2"
                     /note="structural protein"
                     /codon_start=1
                     /product="capsid protein VP2"
                     /protein_id="BDS00051.1"
                     /translation="MAGAFIAGLAGDMLTNAVGSLANAGANAINQKVDFENNKYLQNA
                     SFAHDKEMLAAQVEATKRLQADMIGIKQGILAAGGFSPADAARGAINAPMTKVLDWNG
                     TRYWAPNATTTTSISGGFTGQTVHRPTPSFKTSQTPRPAPSSGSSVKSSSTQLTSLSS
                     HSSGSSRSTGSTVVSSLPSSSRTREWVNQQNLNLEPHLPGSLRTAFVTPPSSTASSSS
                     TVSTVPKGVLDSWTPAFNTRKQPLFAHLRRRGESKV"
ORIGIN      
        1 tgaatgagga tgggcccatc atctttgaga agcactcaaa atataaatac cactatgatg
       61 ctgactactc taggtgggac tcgacccagc aaaggcacat ctggggggct gcccttgaga
      121 taatggttag attctcggct gaacctgaat tggcacaaat tgtggctgag gatctcttag
      181 cccctagcat catggatgtt ggtgacttca aaattaccat aaatgagggc ttgccctccg
      241 gagtgccgtg cacatcacaa tggaactcaa tttctcattg gctaataaca ttgtgtgcca
      301 tatcagaagt ctcaggactg tcaccagatg tggtgcagac aaattcctgc ttctcattct
      361 atggagatga tgagatagtc agcactgata taaaattaga ccccatgaag ctgacaaaca
      421 aattgaagga gtacgggctg atcccgacaa gaccagacaa gacagagggg ccacttataa
      481 tcaaggagag cctcgaaggt ctgaccttcc tgagaaggga ggtgtgccga gatccggctg
      541 ggtggttcgg gaagcttgac caatcctcaa tcatgagaca actgtactgg accaagggac
      601 ctaaccatga tgatcccaat gaaacaatga ttccacactc tcagaggccc atacaattga
      661 tgtccctact gggggaggca gcactacatg gaccagcttt ctataagaaa gtcagtaaat
      721 tagtcatcac tgagctcaag gagggtggga tggacttcta tgtgccaaga caggaaccta
      781 tgtttaggtg gatgaggttc tctgacctca gcacttggga gggcgatcgc aatctggctc
      841 ccgagggtgt gaatgaagat ggcgtcgaat gacgccgctc catctaatga tggtgcagcc
      901 ggcctcgtgc cagagatcaa caatgaggct ttggctctag aaccagtcgc aggaggagct
      961 atcgcagccc ctctgactgg tcagacaaat tttattgatc cctggattag aaataattat
     1021 gtgcaagcac ccaatggtga atttactgtg tccccaagaa attctcctgg tgaaatctta
     1081 cttaatttgg aacttggtcc tgagcttaac cccttcctag ctcatttgtc aaggatgtat
     1141 aatggatatg ctggaggcgt ggatgtgcaa gtcatcatgg ctggaacttt ctttgctgct
     1201 ggaaagatct tatttgcagc tgtgccaccc cacttccctg ttgagaatct tagccctccc
     1261 cagataacca tgttccctca tataattgtg gatgttagga cccttgaacc tataaatatc
     1321 cccttgcccg atggcaggag cttttttagc cactacagtc agaacaacga gccccgcatg
     1381 agggttgttg ccatgctgta cactcctctc agatccaacg ggtcggcaga ggacgtgttt
     1441 acagtgtctt gcaaagtgct gacaaaacca tctgtggatt tcgagtttaa ttaccttgtc
     1501 cccccgactg tagagtcaag aacaaaaccc ttcacaatcc caatactcac aattggagag
     1561 atgactaatt caaggttccc tgtagcaatt gacatgttgc acaccagtcc aactgatggc
     1621 atcagtgtcc agcccaaaaa cggcaggtgc actctcgatg gtgaactcca gggcactaca
     1681 ccactggtcg ccaccaacat ttgtgctttt cggggtagca ttgcaggaca tgaggggcaa
     1741 agtgaccaac atctgtggca tttcagagtg accaacccca atgggacccc ctttgacccc
     1801 actgaagatg tgccagcccc acttgggact ccagacttta agggagaatt gtatggggtg
     1861 atcgcccaaa ggaacagaat agacccagga caaacccaac caaccaacag gtctcatgaa
     1921 ggtgtgatct caacccgttc accaaaattc acacccaaac ttggatcagt catgattgga
     1981 acttggaaca ccgatgacat acaagaccaa ccttccaaat ttataccgat tggcctaact
     2041 ggtagtgata acttccagca gtgggaacta ccagactatt ccggagcact caccctcaac
     2101 atggggttgg caccatccat ttttcccact taccctggtg aacaaattct cttcttccgc
     2161 tcctatattc cattgaaggg aggttatggc aaccctttca ttgattgcct cttgccccag
     2221 gagtggatct ctcacttcta ccaagagtct gctccctcgc agactgatgt ggctttgatt
     2281 agatatgtca atcccgacac aggacgtgtc ctgttcgagg ccaaattgca cagacaggga
     2341 ttcatcactg tcgccaagac tggggatagc cccatcaatg tgcctgccaa tgggtatttt
     2401 agatttgatt cttgggttaa tcaattttac tctcttgccc ccatgggaac tgggaatggg
     2461 cgcagaagga ttcagtaatg gcaggagctt tcatagcagg attggctggt gatatgttaa
     2521 caaatgctgt agggtcttta gctaatgcag gggctaatgc tatcaatcag aaagttgatt
     2581 ttgagaataa taaatattta cagaatgcat catttgctca tgacaaggag atgttagccg
     2641 cacaagttga ggcaacaaag agacttcagg ctgacatgat tggcattaag caggggatct
     2701 tggccgctgg cggcttttcc cccgctgatg ccgcaagggg ggcaatcaac gcacccatga
     2761 ctaaagtcct ggattggaat ggcacacgct actgggcacc aaacgccacc accacaactt
     2821 caatctctgg tggtttcact ggacagactg tgcacaggcc cacaccaagt ttcaaaacct
     2881 ctcagactcc caggcctgca cccagcagcg ggtcctccgt gaagtcgagt tcaacccagc
     2941 tcactagttt gagttctcat tcttcagggt cttcacgatc cactgggtcc acagttgtca
     3001 gttccttgcc atcttccagc agaaccagag agtgggtcaa ccaacagaat ctgaatctgg
     3061 agccacattt gcctgggtct ctcagaacag cctttgtcac cccaccatct agcactgctt
     3121 ctagttcaag cacagtctca accgtgccga agggtgtttt ggactcctgg acacctgcgt
     3181 tcaacactcg caagcagccg ctatttgctc accttcgtag aaggggggag tcaaaagttt
     3241 agtgaaaaga ttatttgatt agatttgatt tgattggaaa gtctttt
//