Human calicivirus
Typing tool

Complete norovirus genomes

AB684720  GII.4 Sydney
 GII.P12

Length: 2,778 | 3 CDS 

ORF1: 1..326
ORF2: 307..1926
ORF3: 1926..2732

LOCUS       AB684720                2778 bp    RNA     linear   VRL 31-MAR-2017
DEFINITION  Norovirus Hu/GII/64-3/Tokyo/1983/JPN genes for polymerase, capsid
            protein, minor capsid protein, partial and complete cds.
ACCESSION   AB684720
VERSION     AB684720.1
KEYWORDS    .
SOURCE      Norovirus Hu/GII/64-3/Tokyo/1983/JPN
  ORGANISM  Norovirus Hu/GII/64-3/Tokyo/1983/JPN
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE   1
  AUTHORS   Mori,K., Chu,P.Y., Motomura,K., Somura,Y., Nagano,M., Kimoto,K.,
            Akiba,T., Kai,A. and Sadamasu,K.
  TITLE     Genomic analysis of the evolutionary lineage of Norovirus GII.4
            from archival specimens during 1975-1987 in Tokyo
  JOURNAL   J. Med. Virol. 89 (2), 363-367 (2017)
   PUBMED   27380721
  REMARK    DOI:10.1002/jmv.24624
REFERENCE   2
  AUTHORS   Mori,K., Nagano,M., Kimoto,K., Somura,Y., Akiba,T., Hayashi,Y.,
            Sadamasu,K. and Kai,A.
  TITLE     Detection of Enteric Viruses in Fecal Specimens from Nonbacterial
            Foodborne Gastroenteritis Outbreaks in Tokyo, Japan between 1966
            and 1983
  JOURNAL   Jpn. J. Infect. Dis. 70 (2), 143-151 (2017)
   PUBMED   27357976
  REMARK    DOI:10.7883/yoken.JJID.2015.456
REFERENCE   3  (bases 1 to 2778)
  AUTHORS   Mori,K., Nagano,M., Akiba,T., Hayashi,Y. and Kai,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-NOV-2011) Contact:Kohji Mori Tokyo Metropolitan
            Institute of Public Health, Department of Microbiology; 3-24-1
            Hyakunin-cho, Shinjuku, Tokyo 169-0073, Japan
FEATURES             Location/Qualifiers
     source          1..2778
                     /organism="Norovirus Hu/GII/64-3/Tokyo/1983/JPN"
                     /mol_type="genomic RNA"
                     /strain="Hu/GII/64-3/Tokyo/1983/JPN"
                     /isolation_source="human feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:1117794"
                     /country="Japan:Tokyo"
                     /collection_date="1983-02"
     CDS             <1..326
                     /codon_start=3
                     /product="polymerase"
                     /protein_id="BAV24796.1"
                     /translation="GKLEQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEA
                     ALHGPALYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVN
                     EDGVE"
     gene            307..1926
                     /gene="VP1"
     CDS             307..1926
                     /gene="VP1"
                     /codon_start=1
                     /product="capsid protein"
                     /protein_id="BAV24797.1"
                     /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
                     QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLSRMYNGYAGG
                     FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
                     VRNNFYHYNQAHDSTLKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
                     TVESRTKPFSVPILTVEEMSNSRFPIPLEKLYTGPSSAFVVQPQNGRCTTDGVLLGTT
                     QLSAVNICNFRGDVTHIRGSRDYTMNLVSQNWNNYDPTEEIPAPLGTPDFVGKIQGLL
                     TQTTRADGSTRAHKATVSTGSVHFTPKLGSVQFTTDTDNDFQTGQNTKFTPVGVIQDS
                     DHHQNEPQQWVLPNYSGASGHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDC
                     LLPQEWVLHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYITVAHTGPYDLVI
                     PPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
     gene            1926..2732
                     /gene="VP2"
     CDS             1926..2732
                     /gene="VP2"
                     /codon_start=1
                     /product="minor capsid protein"
                     /protein_id="BAV24798.1"
                     /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
                     SFQFSSNLQQASFQHDKEMLQAQIEATQKLQHDLMKVKHALLLEGGFSTTDAARGAIN
                     APMTKALDWSGTRCWAPDAPVTTYNAGDFSTPHPSGALPGRANPRVPVSARSSPSTLS
                     SAPTATSVYSNQTVSTRLGSSAGSGTGVSSLPSTARTRNWVEDQNRNLSPFMRGALNT
                     SFVTPPSSRSSNQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN      
        1 ttggaaaatt ggaacagagc tcaatactta ggcaaatgta ctggactagg ggccccaatc
       61 atgaagaccc atctgaaaca atgataccac actcccaaag acccatacaa ttaatgtctt
      121 tactgggcga ggccgcactc cacggcccag cattgtacag caaaattagc aagctagtca
      181 ttgcagagct gaaagaaggt ggcatggatt tttacgtgcc cagacaagag ccaatgttca
      241 gatggatgag attctcagac ctgagcacgt gggagggcga tcgcaatctg gctcccagtt
      301 ttgtgaatga agatggcgtc gagtgacgcc aacccatctg atgggtccac agccaacctc
      361 gtcccagagg tcaacaatga ggttatggct ctggagcccg ttgttggtgc cgccattgca
      421 gcacctgtag cgggccaaca aaatgtaatt gacccctgga ttagaaataa ttttgtacaa
      481 gcccctggtg gagagtttac agtgtcccct agaaacgctc caggtgagat actatggagt
      541 gcgcccttgg gccctgattt gaatccctat ctttctcact tgtccagaat gtacaatggt
      601 tatgcaggtg gttttgaagt gcaagtaatc ctcgcgggga acgcgttcac cgccgggaaa
      661 atcatatttg cagcagttcc accaaacttt ccaactgaag gcctaagccc cagccaggtt
      721 actatgtttc cccacataat tgtggatgtt aggcaattgg aacctgtatt gattccccta
      781 cctgatgtta ggaataattt ctatcattac aatcaagcac atgattctac cctcaaacta
      841 atagcaatgt tgtatacacc actcagagct aataatgccg gggatgatgt cttcacagtc
      901 tcttgtcgag ttctcacgag gccatccccc gattttgatt ttatattctt ggtgccaccc
      961 acagttgaat caagaactaa accattttcc gtcccaatct taactgttga ggaaatgtct
     1021 aattcaagat tccccattcc tttggaaaag ctatacacgg gtcctagcag tgcttttgtt
     1081 gtccaaccac aaaatggcag atgtacgact gatggcgtgc tcttaggcac tactcagctg
     1141 tcagctgtca atatctgcaa cttcaggggg gatgtcaccc acattagggg cagccgtgac
     1201 tatacaatga atttggtgtc ccaaaattgg aacaattatg acccaacaga agaaatccca
     1261 gcccccctgg gaacaccaga ctttgtggga aagatccaag gcttgctcac ccaaaccaca
     1321 agagcggacg gctcgacccg cgcccacaaa gccacagtga gcactggaag tgttcacttc
     1381 actccaaagc tgggtagtgt tcaattcacc actgatacgg acaatgactt ccaaactggc
     1441 caaaacacaa aattcacccc agttggcgtc atccaagaca gtgaccacca tcagaatgaa
     1501 ccccaacaat gggtacttcc aaattactca ggtgcgtctg gtcacaatgt gcatctggcc
     1561 cctgccgttg cccccacttt cccgggtgag cagcttcttt tctttaggtc cactatgccc
     1621 gggtgtagcg ggtaccccaa catgaatttg gattgcctac tcccccagga gtgggtgcta
     1681 cacttttatc aggaagcagc tccagcacaa tccgatgtgg ctctgctgag atttgtgaat
     1741 ccagacacag gtagggttct gtttgagtgc aagctccata aatcaggcta catcacagtg
     1801 gctcacaccg gcccgtatga tttggttatc ccccccaatg gttatttcag atttgattct
     1861 tgggtcaacc agttctacac acttgccccc atgggaaatg gaacggggcg caggcgtgca
     1921 ttataatggc tggagctttc tttgctggac tggcatctga tgtcctcggc tctggacttg
     1981 gttctctaat caatgctgga gctggagcca tcaatcaaaa agttgaattt gaaaacaata
     2041 gaaaattgca acaagcttcc ttccaattta gtagtaatct gcaacaggct tccttccaac
     2101 atgataaaga gatgctccaa gcacaaattg aggctaccca aaaattgcaa cacgatctga
     2161 tgaaagtgaa acacgcgctg ctcctagagg ggggattttc cacaacagat gcggcccgtg
     2221 gggcaatcaa cgcccccatg acaaaggcgc tggactggag cggaacacgg tgctgggccc
     2281 ccgatgcccc ggtcacaaca tacaatgcag gcgacttctc cacccctcac ccttcggggg
     2341 cattgccagg aagggccaat cctagggttc ccgtttctgc tcggagctcc cccagtacac
     2401 tctctagtgc tcccactgcc acttctgtgt attcaaatca aactgtttca acgagactag
     2461 gttcttcagc tggttctggt accggtgtct cgagtctccc gtcaactgca aggactagga
     2521 actgggttga ggaccaaaac aggaatttgt cacctttcat gaggggggct ctcaacacat
     2581 catttgtcac ccctccatct agtagatcct ctaaccaagg cacagtctca accgtgccta
     2641 aagaaatttt ggactcctgg actggcgctt ttaacacgcg caggcagcct ctcttcgcac
     2701 acattcgcaa gcgaggggag tcacgggtgt aatgtgaaaa gacaaaattg attatctttc
     2761 ctttctttag tgtctttt
//