Typing tool
|
Complete norovirus genomes
AB684705 | GII.4 | ||
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GII.P12 |
ORF1: 1..2428 ORF2: 2409..4028 ORF3: 4028..4834LOCUS AB684705 4879 bp RNA linear VRL 31-MAR-2017 DEFINITION Norovirus Hu/GII/53-1/Tokyo/1980/JPN genes for polyprotein, capsid protein, minor capsid protein, partial and complete cds. ACCESSION AB684705 VERSION AB684705.1 KEYWORDS . SOURCE Norovirus Hu/GII/53-1/Tokyo/1980/JPN ORGANISM Norovirus Hu/GII/53-1/Tokyo/1980/JPN Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Mori,K., Chu,P.Y., Motomura,K., Somura,Y., Nagano,M., Kimoto,K., Akiba,T., Kai,A. and Sadamasu,K. TITLE Genomic analysis of the evolutionary lineage of Norovirus GII.4 from archival specimens during 1975-1987 in Tokyo JOURNAL J. Med. Virol. 89 (2), 363-367 (2017) PUBMED 27380721 REMARK DOI:10.1002/jmv.24624 REFERENCE 2 AUTHORS Mori,K., Nagano,M., Kimoto,K., Somura,Y., Akiba,T., Hayashi,Y., Sadamasu,K. and Kai,A. TITLE Detection of Enteric Viruses in Fecal Specimens from Nonbacterial Foodborne Gastroenteritis Outbreaks in Tokyo, Japan between 1966 and 1983 JOURNAL Jpn. J. Infect. Dis. 70 (2), 143-151 (2017) PUBMED 27357976 REMARK DOI:10.7883/yoken.JJID.2015.456 REFERENCE 3 (bases 1 to 4879) AUTHORS Mori,K., Nagano,M., Akiba,T., Hayashi,Y. and Kai,A. TITLE Direct Submission JOURNAL Submitted (24-NOV-2011) Contact:Kohji Mori Tokyo Metropolitan Institute of Public Health, Department of Microbiology; 3-24-1 Hyakunin-cho, Shinjuku, Tokyo 169-0073, Japan FEATURES Location/Qualifiers source 1..4879 /organism="Norovirus Hu/GII/53-1/Tokyo/1980/JPN" /mol_type="genomic RNA" /strain="Hu/GII/53-1/Tokyo/1980/JPN" /isolation_source="human feces" /host="Homo sapiens" /db_xref="taxon:1117779" /country="Japan:Tokyo" /collection_date="1980-11" CDS <1..2428 /codon_start=2 /product="polyprotein" /protein_id="BAV24793.1" /translation="FSSKGLSDEVYDEFIRIREERNGMYSIEEYLQDRDKYYEEVSFP RAIEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRNPDDFKLKGKLWA DDDRSVDYNERLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHVIPQGAQEFFGVP IKQIQIHKSGEFCRLRFPKPIRTDVAGMILEEGAPEGTVATLLIKRPTGELMPLAARM GTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRENDYVVIGVHTA AARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGSAPKLSTKTKFWRSSTTPL PPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLEAAKKTIINVL EQTIDPPQKWSFTQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASKANLMFE EGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGGLMDELKAHC VTLPVRVGMNINEDGPIIFERHSRYKYHYDADNSRWDSTQQRAVLAAALEIMVKFSPE PHLAQIVAEDLLSPSVMDVGDFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTD LSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISED LNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSETMIPHSQRPTQLMS LLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLA PSFVNEDGVE" gene 2409..4028 /gene="VP1" CDS 2409..4028 /gene="VP1" /codon_start=1 /product="capsid protein" /protein_id="BAV24794.1" /translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNIIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLSPDLNPYLSHLSRMYNGYAGG FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQTHDSTLKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMSNSRFPIPLEKLYTGPSSAFVVQPQNGRCTTDGVLLGTT QLSAVNICNFRGDVTRVGISHDYTMNLVSQNWNNYDPTEEIPAPLGTPDFVGKIQGLL TQTTRADSSTRAHKATLSTGSVHFTPKLGSVQFTTDTNNDFQTGQNTKFTPVGVIQDS DHHQNEPQQWVLPNYSGSSGHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDC LLPQEWVLHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYITVAHTGPYDLVI PPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" gene 4028..4834 /gene="VP2" CDS 4028..4834 /gene="VP2" /codon_start=1 /product="minor capsid protein" /protein_id="BAV24795.1" /translation="MAGPFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATQKLQQGLMKVKQAVLLEGGFSTTDAARGAIN APMTKALDWSGTRYWAPDARITTYNTGRFSTPQPLGASPGRTSPRVPAPTRNSPSSLS NASTATSVYSNHTVSTRLGSSAGSGTGVSSLPSTARTRSWVEDQNRVLSPYMRGALNT SFVTPPSSRSSNQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 cttctctagc aaaggtctca gtgatgaagt gtacgatgag tttataagaa tcagagaaga 61 aagaaacggc atgtactcca tagaagagta ccttcaggac agggacaagt actatgagga 121 ggtgtcattt cccagggcga tcgaagagga cttttgtgaa gaagaagagg ccaagattcg 181 tcagaggatt ttcagaccaa caaggaagca gcgcaaagag gagagggcct ctctcggttt 241 ggtcacaggc tctgaaatta ggaagaggaa cccagatgat ttcaagctta aaggaaaact 301 gtgggctgat gacgacagga gtgttgacta caatgagaga ctcaattttg aagccccacc 361 gagcatctgg tcgaggatag tcaactttgg ttcaggttgg ggtttttggg tttcccccag 421 cctgttcata acatcaactc acgtcatacc ccagggcgca caggagttct ttggagtccc 481 catcaaacaa attcagatac acaaatcggg cgagttttgc cgcttgaggt ttccaaagcc 541 aatcaggact gatgtggcgg gcatgatctt agaagaaggt gcgcccgaag ggaccgtggc 601 cacactactc atcaagaggc caactggaga acttatgccc ttggcagcca gaatgggaac 661 ccatgcaacc atgaaaatcc aagggcgcac tgttggaggt caaatgggca tgcttctgac 721 aggatccaac gccaagagta tggatctagg caccacacca ggtgactgtg ggtgtcccta 781 catttacaag agggaaaatg actacgtggt cattggagtt cacacggctg ccgctcgtgg 841 aggaaacact gtcatatgtg ccacccaggg gagtgaggga gaagccacac ttgaaggcgg 901 tgacaataag ggaacctact gtggtgcacc aatcttaggc ccaggaagtg ccccaaaact 961 cagcaccaag actaaatttt ggagatcatc tacaacacca ctcccgcctg gtacctatga 1021 accagcctac cttggtggca aggaccccag agtcaagggt ggcccttcat tgcaacaagt 1081 tatgagggac cagctgaaac catttacgga gcccaggggc aaaccaccaa aaccaagtgt 1141 gttagaggct gccaagaaaa ccatcatcaa tgtccttgaa caaacaattg atccacctca 1201 gaaatggtca ttcacgcaag cttgcgcgtc cctcgacaag accacttcca gtggccaccc 1261 gcaccacatg cggaaaaacg actgctggaa cggggaatcc ttcacaggca aattggcaga 1321 tcaggcttcc aaggccaacc tgatgttcga agaggggaaa aacatgaccc cggtatacac 1381 aggtgcgctt aaggatgagc tggtcaaaac tgataaaatt tatggtaaga tcaagaagag 1441 gctcctctgg ggctcggacc tggcgaccat gatccggtgc gctcgagcat ttggaggcct 1501 aatggatgaa ctcaaggcac actgtgtcac actacctgtc agagttggta tgaacatcaa 1561 tgaggatggt cctatcatct ttgagagaca ctccagatac aaataccatt atgatgctga 1621 taactctcgg tgggactcga cacaacaaag ggccgtgcta gcggcagccc tagaaatcat 1681 ggttaaattc tccccagaac cgcacctggc ccagatagtt gcagaagacc ttctctctcc 1741 cagtgtgatg gatgtaggtg acttcaaaat atcaatcaat gagggtctcc cctccggggt 1801 gccctgcacc tcccaatgga actccattgc ccactggctc ctcactctct gcgcactctc 1861 tgaagttaca gatctgtccc ctgacatcat tcaggctaac tccctctttt ccttctatgg 1921 tgatgatgaa attgtgagta cagacataaa gttggaccca gagaaattga cagcaaaact 1981 caaggaatac gggttgaaac caacccgccc tgacaaaact gagggacccc ttgtcatctc 2041 tgaagacctg aatggcctga ccttcctgcg gagaactgtg acccgcgacc cagctggctg 2101 gtttggaaaa ttggaacaga gctcaatact tagacaaatg tactggacta ggggccccaa 2161 tcatgaagac ccatctgaaa caatgatacc acactcccaa agacccacac aattgatgtc 2221 tttgctgggc gaggctgcac ttcacggccc agcattctac agcaaaatca gcaagctagt 2281 cattgcagag ttgaaggaag gtggcatgga tttttacgtg cccagacaag agccaatgtt 2341 cagatggatg agattctcag atctgagcac gtgggagggc gatcgcaatc tggctcccag 2401 ttttgtgaat gaagatggcg tcgagtgacg ccaacccatc tgatgggtcc gcagccaacc 2461 tcgtcccaga ggtcaacaat gaggtcatgg ctttggagcc tgttgttggt gctgccattg 2521 cagcgcctgt ggcaggccaa caaaatataa ttgacccctg gattagaaat aattttgtac 2581 aagcccctgg tggagagttc acagtgtccc ccagaaacgc tccaggtgag atactatgga 2641 gcgcgccctt gagccctgat ttgaacccct atctttccca cctgtccaga atgtacaatg 2701 gttatgcagg tggttttgag gtgcaagtaa tcctcgcggg gaacgcgttc accgctggga 2761 aagtcatatt tgcagcagtt ccaccaaatt ttccaactga aggtctaagc cccagccagg 2821 ttactatgtt cccccatata attgtagatg ttaggcaatt ggagcctgtg ttgatccccc 2881 tacctgatgt taggaataat ttctatcatt ataatcaaac acatgattct acccttaaat 2941 tgatagcaat gttgtataca ccactcagag ctaataatgc tggagatgat gtctttacag 3001 tctcttgtcg agtcctcacg agaccatccc ccgattttga tttcatattc ctggtgccac 3061 ccacagttga atcaagaact aaaccattta ctgtcccaat cttaactgtt gaggagatgt 3121 ccaattcaag gttccccatc cctttggaaa agctgtatac gggtcctagc agtgcttttg 3181 ttgtccaacc acaaaatggc agatgcacga ctgatggcgt gctcttgggc actactcaac 3241 tgtcagctgt caatatctgt aatttcaggg gggatgtcac ccgtgttggg atcagccatg 3301 attatacaat gaacttggtg tcccaaaatt ggaacaatta tgatccaaca gaagaaattc 3361 cagcacccct ggggacaccc gactttgtag gaaagataca aggcttgctc acccaaacca 3421 caagagcgga cagctcgacc cgcgcccaca aagctacact gagcactggg agtgtccact 3481 tcactccaaa gctgggtagt gttcaattca ccaccgatac gaataatgat ttccagactg 3541 gccaaaacac aaaatttacc ccagttggtg tcatccaaga cagcgatcac catcagaatg 3601 aaccccaaca atgggtactc ccaaattact caggctcatc tggtcacaat gtgcatctgg 3661 cccctgcagt tgcccccact ttcccaggtg agcagcttct tttcttcagg tccactatgc 3721 ctgggtgtag cgggtacccc aacatgaatt tggactgcct gctcccccag gagtgggtac 3781 tgcactttta ccaggaagca gccccagcac aatccgatgt ggccttgctg agatttgtga 3841 atccggacac aggtagggtt ttgtttgagt gcaaactcca taagtcaggc tatatcacag 3901 tggctcatac tggcccgtat gatttggtta tcccccccaa tggttatttc agatttgatt 3961 cttgggttaa tcaattctac acgctcgccc ccatgggaaa tggaacgggg cgcaggcgtg 4021 cattataatg gctggacctt tctttgctgg attggcatct gatgtcctcg gttctggact 4081 tggttctcta atcaatgctg gggctggggc catcaatcaa aaagttgaat ttgaaaataa 4141 tagaaaattg caacaagctt cttttcaatt cagtagtaat ctgcaacagg cttccttcca 4201 acatgataag gagatgctcc aagcacaaat tgaggccact caaaaattgc aacaaggttt 4261 gatgaaggtt aagcaggcgg tgctcctgga gggtgggttt tccacaacag atgcagcccg 4321 tggggcaatc aacgccccca tgacaaaggc tctggactgg agcggaacaa ggtactgggc 4381 tcctgatgcc aggatcacaa catacaacac aggccgcttc tccacccctc agcctttggg 4441 ggcatcacct gggagaacca gtcctagggt tcctgcacct actcggaact cccccagttc 4501 actttctaat gcttctactg ctacttctgt gtattccaat cacactgttt caacgagact 4561 aggttcttca gctggttctg gcaccggtgt ctcgagcctc ccgtcaactg caaggactag 4621 gagctgggtt gaggatcaaa acagagtttt gtcgccttac atgagggggg ccctcaacac 4681 atcatttgtc acccctccat ctagtagatc ctccaaccaa ggcacagtct caaccgtgcc 4741 taaagagatt ttggactcct ggactggcgc ttttaacacg cgcaggcagc ctctcttcgc 4801 acacattcgt aagcgagggg agtcacgggt gtaatgtgaa aagacaaatt gattatcttt 4861 cttttcttta gtgtctttt //