Typing tool
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Typing tool
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Complete norovirus genomes
| AB684705 | GII.4 | |
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| GII.P12 |
ORF1: 1..2428
ORF2: 2409..4028
ORF3: 4028..4834
LOCUS AB684705 4879 bp RNA linear VRL 31-MAR-2017
DEFINITION Norovirus Hu/GII/53-1/Tokyo/1980/JPN genes for polyprotein, capsid
protein, minor capsid protein, partial and complete cds.
ACCESSION AB684705
VERSION AB684705.1
KEYWORDS .
SOURCE Norovirus Hu/GII/53-1/Tokyo/1980/JPN
ORGANISM Norovirus Hu/GII/53-1/Tokyo/1980/JPN
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Mori,K., Chu,P.Y., Motomura,K., Somura,Y., Nagano,M., Kimoto,K.,
Akiba,T., Kai,A. and Sadamasu,K.
TITLE Genomic analysis of the evolutionary lineage of Norovirus GII.4
from archival specimens during 1975-1987 in Tokyo
JOURNAL J. Med. Virol. 89 (2), 363-367 (2017)
PUBMED 27380721
REMARK DOI:10.1002/jmv.24624
REFERENCE 2
AUTHORS Mori,K., Nagano,M., Kimoto,K., Somura,Y., Akiba,T., Hayashi,Y.,
Sadamasu,K. and Kai,A.
TITLE Detection of Enteric Viruses in Fecal Specimens from Nonbacterial
Foodborne Gastroenteritis Outbreaks in Tokyo, Japan between 1966
and 1983
JOURNAL Jpn. J. Infect. Dis. 70 (2), 143-151 (2017)
PUBMED 27357976
REMARK DOI:10.7883/yoken.JJID.2015.456
REFERENCE 3 (bases 1 to 4879)
AUTHORS Mori,K., Nagano,M., Akiba,T., Hayashi,Y. and Kai,A.
TITLE Direct Submission
JOURNAL Submitted (24-NOV-2011) Contact:Kohji Mori Tokyo Metropolitan
Institute of Public Health, Department of Microbiology; 3-24-1
Hyakunin-cho, Shinjuku, Tokyo 169-0073, Japan
FEATURES Location/Qualifiers
source 1..4879
/organism="Norovirus Hu/GII/53-1/Tokyo/1980/JPN"
/mol_type="genomic RNA"
/strain="Hu/GII/53-1/Tokyo/1980/JPN"
/isolation_source="human feces"
/host="Homo sapiens"
/db_xref="taxon:1117779"
/geo_loc_name="Japan:Tokyo"
/collection_date="1980-11"
CDS <1..2428
/codon_start=2
/product="polyprotein"
/protein_id="BAV24793.1"
/translation="FSSKGLSDEVYDEFIRIREERNGMYSIEEYLQDRDKYYEEVSFP
RAIEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRNPDDFKLKGKLWA
DDDRSVDYNERLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHVIPQGAQEFFGVP
IKQIQIHKSGEFCRLRFPKPIRTDVAGMILEEGAPEGTVATLLIKRPTGELMPLAARM
GTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRENDYVVIGVHTA
AARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGSAPKLSTKTKFWRSSTTPL
PPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLEAAKKTIINVL
EQTIDPPQKWSFTQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASKANLMFE
EGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGGLMDELKAHC
VTLPVRVGMNINEDGPIIFERHSRYKYHYDADNSRWDSTQQRAVLAAALEIMVKFSPE
PHLAQIVAEDLLSPSVMDVGDFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTD
LSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISED
LNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSETMIPHSQRPTQLMS
LLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLA
PSFVNEDGVE"
gene 2409..4028
/gene="VP1"
CDS 2409..4028
/gene="VP1"
/codon_start=1
/product="capsid protein"
/protein_id="BAV24794.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNIIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLSPDLNPYLSHLSRMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQTHDSTLKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMSNSRFPIPLEKLYTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSAVNICNFRGDVTRVGISHDYTMNLVSQNWNNYDPTEEIPAPLGTPDFVGKIQGLL
TQTTRADSSTRAHKATLSTGSVHFTPKLGSVQFTTDTNNDFQTGQNTKFTPVGVIQDS
DHHQNEPQQWVLPNYSGSSGHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDC
LLPQEWVLHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYITVAHTGPYDLVI
PPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
gene 4028..4834
/gene="VP2"
CDS 4028..4834
/gene="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="BAV24795.1"
/translation="MAGPFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATQKLQQGLMKVKQAVLLEGGFSTTDAARGAIN
APMTKALDWSGTRYWAPDARITTYNTGRFSTPQPLGASPGRTSPRVPAPTRNSPSSLS
NASTATSVYSNHTVSTRLGSSAGSGTGVSSLPSTARTRSWVEDQNRVLSPYMRGALNT
SFVTPPSSRSSNQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 cttctctagc aaaggtctca gtgatgaagt gtacgatgag tttataagaa tcagagaaga
61 aagaaacggc atgtactcca tagaagagta ccttcaggac agggacaagt actatgagga
121 ggtgtcattt cccagggcga tcgaagagga cttttgtgaa gaagaagagg ccaagattcg
181 tcagaggatt ttcagaccaa caaggaagca gcgcaaagag gagagggcct ctctcggttt
241 ggtcacaggc tctgaaatta ggaagaggaa cccagatgat ttcaagctta aaggaaaact
301 gtgggctgat gacgacagga gtgttgacta caatgagaga ctcaattttg aagccccacc
361 gagcatctgg tcgaggatag tcaactttgg ttcaggttgg ggtttttggg tttcccccag
421 cctgttcata acatcaactc acgtcatacc ccagggcgca caggagttct ttggagtccc
481 catcaaacaa attcagatac acaaatcggg cgagttttgc cgcttgaggt ttccaaagcc
541 aatcaggact gatgtggcgg gcatgatctt agaagaaggt gcgcccgaag ggaccgtggc
601 cacactactc atcaagaggc caactggaga acttatgccc ttggcagcca gaatgggaac
661 ccatgcaacc atgaaaatcc aagggcgcac tgttggaggt caaatgggca tgcttctgac
721 aggatccaac gccaagagta tggatctagg caccacacca ggtgactgtg ggtgtcccta
781 catttacaag agggaaaatg actacgtggt cattggagtt cacacggctg ccgctcgtgg
841 aggaaacact gtcatatgtg ccacccaggg gagtgaggga gaagccacac ttgaaggcgg
901 tgacaataag ggaacctact gtggtgcacc aatcttaggc ccaggaagtg ccccaaaact
961 cagcaccaag actaaatttt ggagatcatc tacaacacca ctcccgcctg gtacctatga
1021 accagcctac cttggtggca aggaccccag agtcaagggt ggcccttcat tgcaacaagt
1081 tatgagggac cagctgaaac catttacgga gcccaggggc aaaccaccaa aaccaagtgt
1141 gttagaggct gccaagaaaa ccatcatcaa tgtccttgaa caaacaattg atccacctca
1201 gaaatggtca ttcacgcaag cttgcgcgtc cctcgacaag accacttcca gtggccaccc
1261 gcaccacatg cggaaaaacg actgctggaa cggggaatcc ttcacaggca aattggcaga
1321 tcaggcttcc aaggccaacc tgatgttcga agaggggaaa aacatgaccc cggtatacac
1381 aggtgcgctt aaggatgagc tggtcaaaac tgataaaatt tatggtaaga tcaagaagag
1441 gctcctctgg ggctcggacc tggcgaccat gatccggtgc gctcgagcat ttggaggcct
1501 aatggatgaa ctcaaggcac actgtgtcac actacctgtc agagttggta tgaacatcaa
1561 tgaggatggt cctatcatct ttgagagaca ctccagatac aaataccatt atgatgctga
1621 taactctcgg tgggactcga cacaacaaag ggccgtgcta gcggcagccc tagaaatcat
1681 ggttaaattc tccccagaac cgcacctggc ccagatagtt gcagaagacc ttctctctcc
1741 cagtgtgatg gatgtaggtg acttcaaaat atcaatcaat gagggtctcc cctccggggt
1801 gccctgcacc tcccaatgga actccattgc ccactggctc ctcactctct gcgcactctc
1861 tgaagttaca gatctgtccc ctgacatcat tcaggctaac tccctctttt ccttctatgg
1921 tgatgatgaa attgtgagta cagacataaa gttggaccca gagaaattga cagcaaaact
1981 caaggaatac gggttgaaac caacccgccc tgacaaaact gagggacccc ttgtcatctc
2041 tgaagacctg aatggcctga ccttcctgcg gagaactgtg acccgcgacc cagctggctg
2101 gtttggaaaa ttggaacaga gctcaatact tagacaaatg tactggacta ggggccccaa
2161 tcatgaagac ccatctgaaa caatgatacc acactcccaa agacccacac aattgatgtc
2221 tttgctgggc gaggctgcac ttcacggccc agcattctac agcaaaatca gcaagctagt
2281 cattgcagag ttgaaggaag gtggcatgga tttttacgtg cccagacaag agccaatgtt
2341 cagatggatg agattctcag atctgagcac gtgggagggc gatcgcaatc tggctcccag
2401 ttttgtgaat gaagatggcg tcgagtgacg ccaacccatc tgatgggtcc gcagccaacc
2461 tcgtcccaga ggtcaacaat gaggtcatgg ctttggagcc tgttgttggt gctgccattg
2521 cagcgcctgt ggcaggccaa caaaatataa ttgacccctg gattagaaat aattttgtac
2581 aagcccctgg tggagagttc acagtgtccc ccagaaacgc tccaggtgag atactatgga
2641 gcgcgccctt gagccctgat ttgaacccct atctttccca cctgtccaga atgtacaatg
2701 gttatgcagg tggttttgag gtgcaagtaa tcctcgcggg gaacgcgttc accgctggga
2761 aagtcatatt tgcagcagtt ccaccaaatt ttccaactga aggtctaagc cccagccagg
2821 ttactatgtt cccccatata attgtagatg ttaggcaatt ggagcctgtg ttgatccccc
2881 tacctgatgt taggaataat ttctatcatt ataatcaaac acatgattct acccttaaat
2941 tgatagcaat gttgtataca ccactcagag ctaataatgc tggagatgat gtctttacag
3001 tctcttgtcg agtcctcacg agaccatccc ccgattttga tttcatattc ctggtgccac
3061 ccacagttga atcaagaact aaaccattta ctgtcccaat cttaactgtt gaggagatgt
3121 ccaattcaag gttccccatc cctttggaaa agctgtatac gggtcctagc agtgcttttg
3181 ttgtccaacc acaaaatggc agatgcacga ctgatggcgt gctcttgggc actactcaac
3241 tgtcagctgt caatatctgt aatttcaggg gggatgtcac ccgtgttggg atcagccatg
3301 attatacaat gaacttggtg tcccaaaatt ggaacaatta tgatccaaca gaagaaattc
3361 cagcacccct ggggacaccc gactttgtag gaaagataca aggcttgctc acccaaacca
3421 caagagcgga cagctcgacc cgcgcccaca aagctacact gagcactggg agtgtccact
3481 tcactccaaa gctgggtagt gttcaattca ccaccgatac gaataatgat ttccagactg
3541 gccaaaacac aaaatttacc ccagttggtg tcatccaaga cagcgatcac catcagaatg
3601 aaccccaaca atgggtactc ccaaattact caggctcatc tggtcacaat gtgcatctgg
3661 cccctgcagt tgcccccact ttcccaggtg agcagcttct tttcttcagg tccactatgc
3721 ctgggtgtag cgggtacccc aacatgaatt tggactgcct gctcccccag gagtgggtac
3781 tgcactttta ccaggaagca gccccagcac aatccgatgt ggccttgctg agatttgtga
3841 atccggacac aggtagggtt ttgtttgagt gcaaactcca taagtcaggc tatatcacag
3901 tggctcatac tggcccgtat gatttggtta tcccccccaa tggttatttc agatttgatt
3961 cttgggttaa tcaattctac acgctcgccc ccatgggaaa tggaacgggg cgcaggcgtg
4021 cattataatg gctggacctt tctttgctgg attggcatct gatgtcctcg gttctggact
4081 tggttctcta atcaatgctg gggctggggc catcaatcaa aaagttgaat ttgaaaataa
4141 tagaaaattg caacaagctt cttttcaatt cagtagtaat ctgcaacagg cttccttcca
4201 acatgataag gagatgctcc aagcacaaat tgaggccact caaaaattgc aacaaggttt
4261 gatgaaggtt aagcaggcgg tgctcctgga gggtgggttt tccacaacag atgcagcccg
4321 tggggcaatc aacgccccca tgacaaaggc tctggactgg agcggaacaa ggtactgggc
4381 tcctgatgcc aggatcacaa catacaacac aggccgcttc tccacccctc agcctttggg
4441 ggcatcacct gggagaacca gtcctagggt tcctgcacct actcggaact cccccagttc
4501 actttctaat gcttctactg ctacttctgt gtattccaat cacactgttt caacgagact
4561 aggttcttca gctggttctg gcaccggtgt ctcgagcctc ccgtcaactg caaggactag
4621 gagctgggtt gaggatcaaa acagagtttt gtcgccttac atgagggggg ccctcaacac
4681 atcatttgtc acccctccat ctagtagatc ctccaaccaa ggcacagtct caaccgtgcc
4741 taaagagatt ttggactcct ggactggcgc ttttaacacg cgcaggcagc ctctcttcgc
4801 acacattcgt aagcgagggg agtcacgggt gtaatgtgaa aagacaaatt gattatcttt
4861 cttttcttta gtgtctttt
//