Typing tool
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Typing tool
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Complete norovirus genomes
| AB684704 | GII.4 | |
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| GII.P12 |
ORF1: 1..2428
ORF2: 2409..4028
ORF3: 4028..4834
LOCUS AB684704 4880 bp RNA linear VRL 31-MAR-2017
DEFINITION Norovirus Hu/GII/52-2/Tokyo/1980/JPN genes for polyprotein, capsid
protein, minor capsid protein, partial and complete cds.
ACCESSION AB684704
VERSION AB684704.1
KEYWORDS .
SOURCE Norovirus Hu/GII/52-2/Tokyo/1980/JPN
ORGANISM Norovirus Hu/GII/52-2/Tokyo/1980/JPN
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1
AUTHORS Mori,K., Chu,P.Y., Motomura,K., Somura,Y., Nagano,M., Kimoto,K.,
Akiba,T., Kai,A. and Sadamasu,K.
TITLE Genomic analysis of the evolutionary lineage of Norovirus GII.4
from archival specimens during 1975-1987 in Tokyo
JOURNAL J. Med. Virol. 89 (2), 363-367 (2017)
PUBMED 27380721
REMARK DOI:10.1002/jmv.24624
REFERENCE 2
AUTHORS Mori,K., Nagano,M., Kimoto,K., Somura,Y., Akiba,T., Hayashi,Y.,
Sadamasu,K. and Kai,A.
TITLE Detection of Enteric Viruses in Fecal Specimens from Nonbacterial
Foodborne Gastroenteritis Outbreaks in Tokyo, Japan between 1966
and 1983
JOURNAL Jpn. J. Infect. Dis. 70 (2), 143-151 (2017)
PUBMED 27357976
REMARK DOI:10.7883/yoken.JJID.2015.456
REFERENCE 3 (bases 1 to 4880)
AUTHORS Mori,K., Nagano,M., Akiba,T., Hayashi,Y. and Kai,A.
TITLE Direct Submission
JOURNAL Submitted (24-NOV-2011) Contact:Kohji Mori Tokyo Metropolitan
Institute of Public Health, Department of Microbiology; 3-24-1
Hyakunin-cho, Shinjuku, Tokyo 169-0073, Japan
FEATURES Location/Qualifiers
source 1..4880
/organism="Norovirus Hu/GII/52-2/Tokyo/1980/JPN"
/mol_type="genomic RNA"
/strain="Hu/GII/52-2/Tokyo/1980/JPN"
/isolation_source="human feces"
/host="Homo sapiens"
/db_xref="taxon:1117778"
/country="Japan:Tokyo"
/collection_date="1980-11"
CDS <1..2428
/codon_start=2
/product="polyprotein"
/protein_id="BAV24790.1"
/translation="FSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDKYYEEVAIA
RATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRNPDDFKPKGKLWA
DDDRSVDYNERLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHVIPQGAQEFFGVP
IKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLIKRPTGELMPLAARM
GTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRENDYVVIGVHTA
AARGGNTVICSTHGSEGEATLEGGDNKGTYCGAPILGPGSAPKLSTKTKFWRSSTTPL
PPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLEAAKKTIINVL
EQTIDPPQKWSFTQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASKANLMFE
EGKNMTPVYTGALKDELVKTDKIYGKIKKSLLWGSDLATMIRCARAFGGLMDELKAHC
VTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWDPTQQRAVLAAALEIMVKFSPE
PHLAQIVAEDLLSPSVMDVGDFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTD
LSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISED
LNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSETMIPHSQRPTQLMS
LLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLA
PSFVNEDGVE"
gene 2409..4028
/gene="VP1"
CDS 2409..4028
/gene="VP1"
/codon_start=1
/product="capsid protein"
/protein_id="BAV24791.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNIIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLSPDLNPYLSHLSRMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQAHDSTLKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMSNSKFPIPLEKLYTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSAVNICNFRGDVTRVGTSHDYTMNLVSQNWNNYDPTEEIPAPLGTPDFVGKIQGLL
TQTTRADGSTRAHKATVSTGSVHFTPKLGSVQFTTDTNNDFETGQNTKFTPVGVIQDG
DHHQNEPQQWVLPSYSGSSGHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDC
LLPQEWVLHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYITVAHTGPYDLVI
PPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
gene 4028..4834
/gene="VP2"
CDS 4028..4834
/gene="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="BAV24792.1"
/translation="MAGPFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATQKLQQGLMKVKQAVLLEGGFSTTDAARGAIN
APMTKALDWSGTRYWAPDARVTTYNTGRFSTPQPLGASPGRTNPRVPAPTRNSPSSLS
DASTATSVYSNHTVSTRLGSSAGSGTGVSSLPSTARTRSWVEDQNRSLSPYMRGALNT
SFVTPPSSRSSNQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 cttctcaagc aaaggtctca gtgatgaaga gtacgatgag tacaagagaa tcagagaaga
61 aagaaacggc aagtactcca tagaagagta tcttcaggac agggacaagt actatgagga
121 ggtggccatt gccagggcga ctgaagagga cttttgtgaa gaagaagaag ccaagattcg
181 acagaggatt ttcaggccaa caaggaagca gcgcaaagag gagagggcct ctctcggttt
241 ggtcacaggc tctgaaatta ggaagaggaa cccagatgat ttcaagccta aaggaaaact
301 gtgggctgat gacgacagga gtgttgacta caatgagcga ctcaattttg aagccccacc
361 gagcatctgg tcgaggatag tcaactttgg ttcaggttgg ggtttttggg tttcccccag
421 cctgttcata acatcaactc acgtcatacc ccagggcgca caggagttct ttggagtccc
481 catcaaacaa attcagatac acaaatcggg cgagttttgc cgcttgaggt ttccaaagcc
541 aatcaggact gatgtgacgg gcatgatctt agaagaaggt gcgcccgaag ggaccgtggc
601 cacactactc atcaagaggc caactggaga acttatgccc ttggcagcca gaatgggaac
661 ccatgcaacc atgaagattc aagggcgcac tgttggaggt caaatgggca tgcttctgac
721 aggatccaac gccaagagta tggatctagg caccacacca ggtgactgtg gctgtcccta
781 catttacaag agggaaaatg actacgtggt cattggagtt cacacggctg ccgctcgtgg
841 aggaaacact gtcatatgtt ccacacacgg gagtgagggg gaagccacac ttgaaggcgg
901 tgacaataag ggaacctact gtggtgcacc aatcttaggc ccaggaagtg ccccaaaact
961 cagcaccaag accaaatttt ggagatcatc tacaacacca ctcccgcctg gtacctatga
1021 accagcctac cttggtggca aggaccccag agtcaagggt ggcccttcat tgcaacaagt
1081 tatgagggac cagctgaaac catttacgga gcccaggggc aaaccaccaa aaccaagtgt
1141 gttagaggct gccaagaaaa ccatcatcaa tgtccttgaa caaacaattg atccacctca
1201 gaaatggtca ttcacgcaag cttgcgcgtc cctcgacaag accacttcca gtggccaccc
1261 gcaccacatg cggaaaaacg actgctggaa cggggaatcc ttcacaggca aattggcaga
1321 tcaggcttcc aaggccaacc tgatgttcga agaggggaag aacatgaccc cggtatacac
1381 aggtgcgctt aaggatgagc tggtcaaaac tgataaaatt tatggtaaga tcaagaagag
1441 tctcctctgg ggctcggacc tggcgaccat gatccgttgc gctcgagcat ttggaggcct
1501 aatggatgaa ctcaaggcac actgtgtcac actacctgtc agagttggta tgaacatgaa
1561 tgaggatggt cctatcatct ttgagagaca ctccagatac aaataccatt atgatgctga
1621 ttactctcgg tgggatccaa cacaacaaag ggccgtgtta gcggcagccc tagaaatcat
1681 ggttaaattc tccccagaac cgcacctggc ccagatagtt gcagaagacc ttctctctcc
1741 cagtgtgatg gatgtaggtg acttcaaaat atcaatcaat gagggtctcc cctccggggt
1801 gccctgcacc tcccaatgga actccattgc ccactggctc ctcactctct gcgcactctc
1861 tgaagttaca gatctgtccc ctgacatcat tcaggctaac tccctctttt ccttctatgg
1921 tgatgatgaa attgtgagta cagacataaa gttggaccca gagaaattga cagcaaaact
1981 caaggaatac gggttgaaac caacccgccc tgacaaaact gagggacccc ttgtcatctc
2041 tgaagacctg aatggcctga ccttcctgcg gagaactgtg acccgcgacc cagctggctg
2101 gtttggaaaa ttggaacaga gctcaatact tagacaaatg tactggacta ggggccccaa
2161 tcatgaagac ccatctgaaa caatgatacc acattcccaa agacccacac aattgatgtc
2221 tttgctgggc gaggctgcac ttcacggccc agcattctac agcaaaatca gcaagctagt
2281 cattgcagag ctgaaggaag gtggcatgga tttttacgtg cccagacaag agccaatgtt
2341 cagatggatg agattctcag atctgagcac gtgggagggc gatcgcaatc tggctcccag
2401 ttttgtgaat gaagatggcg tcgagtgacg ccaacccatc tgatgggtcc gcagccaacc
2461 tcgtcccaga ggtcaacaat gaggtcatgg ctttggagcc tgttgttggt gctgccattg
2521 cagcgcctgt ggcaggccaa caaaatataa ttgacccctg gattagaaat aattttgtac
2581 aagcccctgg tggagagttc acagtgtccc ctagaaacgc tccaggtgag atactatgga
2641 gcgcgccctt gagccctgat ttgaacccct atctttccca cctgtccaga atgtacaatg
2701 gttatgcagg tggttttgag gtgcaagtaa tcctcgcggg gaacgcgttc accgctggga
2761 aagtcatatt tgcagcagtt ccaccaaatt ttccaactga aggtctaagc cccagccagg
2821 ttaccatgtt cccccatata attgtagatg ttaggcaatt ggaacctgtg ttgatccccc
2881 tacctgatgt taggaataat ttctatcatt ataatcaagc acatgattct acccttaaat
2941 tgatagcaat gttgtataca ccactcagag ctaataatgc tggagatgat gtctttacag
3001 tctcttgtcg agtcctcacg agaccatccc ccgattttga tttcatattc ctggtgccac
3061 ccacagttga atcaagaact aaaccattta ctgtcccaat cttaactgtt gaggagatgt
3121 ccaattcaaa gttccccatc cctttggaaa agctgtatac gggtcctagc agtgcttttg
3181 ttgtccaacc acaaaatggc agatgcacga ctgatggcgt gctcttgggc actactcaac
3241 tgtcagctgt caatatctgt aatttcaggg gggatgtcac ccgtgttggg accagtcatg
3301 attatacaat gaacttggtg tcccaaaatt ggaacaatta tgatccaaca gaagaaattc
3361 cagcacccct ggggacacca gactttgtag gaaagatcca aggcttgctc acccaaacca
3421 caagagcgga cggctcgacc cgcgcccaca aagctacagt gagcactggg agtgtccact
3481 ttactccaaa gctgggtagt gttcaattca ccaccgatac gaacaatgat ttcgagactg
3541 gccaaaacac aaaatttacc ccagttggtg tcatccaaga cggtgatcac catcagaatg
3601 aaccccaaca atgggtactc ccaagttact caggctcatc tggtcacaat gtgcatctgg
3661 cccctgcagt tgcccccact ttcccaggtg agcagcttct tttcttcagg tccactatgc
3721 ctgggtgtag cgggtacccc aacatgaatt tggattgcct gctcccccag gagtgggtac
3781 tgcactttta ccaggaagca gccccagcac aatccgatgt ggccttgctg agatttgtga
3841 atccagacac aggtagggtt ttgtttgagt gcaaactcca taagtcaggc tatatcacag
3901 tggctcatac tggcccgtat gatttggtta tcccccccaa tggttatttc agatttgatt
3961 cttgggttaa tcaattctac acgctcgccc ccatgggaaa tggaacgggg cgcaggcgtg
4021 cattataatg gctggacctt tctttgctgg attggcatct gatgtcctcg gttctggact
4081 tggttctcta atcaatgctg gggctggggc catcaatcaa aaagttgaat ttgaaaataa
4141 tagaaaattg caacaggctt cttttcaatt cagtagtaat ctgcaacagg cttccttcca
4201 acatgataag gagatgctcc aagcacaaat tgaggctact caaaaattgc aacaaggttt
4261 gatgaaggtt aagcaggcgg tgctcctgga gggtgggttt tccacaacag atgcagcccg
4321 tggggcaatc aacgccccca tgacaaaggc tctggactgg agcggaacaa ggtactgggc
4381 tcctgatgcc agggtcacaa catacaacac aggccgcttc tccacccctc agcctttggg
4441 ggcatcacct gggagaacaa atcctagggt tcctgcaccc actcggaact cccccagttc
4501 actttctgat gcttctactg ctacttctgt gtattccaat cacactgttt caacgagact
4561 aggttcttca gctggttctg gcaccggtgt ctcgagcctc ccgtcaactg caaggactag
4621 gagctgggtt gaggatcaaa acagaagttt gtcgccttac atgagggggg ccctcaacac
4681 atcatttgtc acccctccat ctagtagatc ctccaaccaa ggcacagtct caaccgtgcc
4741 taaagagatt ttggactcct ggactggcgc ttttaacacg cgcaggcagc ctctcttcgc
4801 acacattcgt aagcgagggg agtcacgggt gtaatgtgaa aagacacaat tgattatctt
4861 tcttttcttt agtgtctttt
//