Typing tool
|
Complete norovirus genomes
AB684675 | GII.4 | ||
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GII.P39 |
ORF1: 1..2428 ORF2: 2409..4028 ORF3: 4028..4834LOCUS AB684675 4881 bp RNA linear VRL 31-MAR-2017 DEFINITION Norovirus Hu/GII/21-5/Tokyo/1975/JPN genes for polyprotein, capsid protein, minor capsid protein, partial and complete cds. ACCESSION AB684675 VERSION AB684675.1 KEYWORDS . SOURCE Norovirus Hu/GII/21-5/Tokyo/1975/JPN ORGANISM Norovirus Hu/GII/21-5/Tokyo/1975/JPN Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 AUTHORS Mori,K., Chu,P.Y., Motomura,K., Somura,Y., Nagano,M., Kimoto,K., Akiba,T., Kai,A. and Sadamasu,K. TITLE Genomic analysis of the evolutionary lineage of Norovirus GII.4 from archival specimens during 1975-1987 in Tokyo JOURNAL J. Med. Virol. 89 (2), 363-367 (2017) PUBMED 27380721 REMARK DOI:10.1002/jmv.24624 REFERENCE 2 AUTHORS Mori,K., Nagano,M., Kimoto,K., Somura,Y., Akiba,T., Hayashi,Y., Sadamasu,K. and Kai,A. TITLE Detection of Enteric Viruses in Fecal Specimens from Nonbacterial Foodborne Gastroenteritis Outbreaks in Tokyo, Japan between 1966 and 1983 JOURNAL Jpn. J. Infect. Dis. 70 (2), 143-151 (2017) PUBMED 27357976 REMARK DOI:10.7883/yoken.JJID.2015.456 REFERENCE 3 (bases 1 to 4881) AUTHORS Mori,K., Nagano,M., Akiba,T., Hayashi,Y. and Kai,A. TITLE Direct Submission JOURNAL Submitted (24-NOV-2011) Contact:Kohji Mori Tokyo Metropolitan Institute of Public Health, Department of Microbiology; 3-24-1 Hyakunin-cho, Shinjuku, Tokyo 169-0073, Japan FEATURES Location/Qualifiers source 1..4881 /organism="Norovirus Hu/GII/21-5/Tokyo/1975/JPN" /mol_type="genomic RNA" /strain="Hu/GII/21-5/Tokyo/1975/JPN" /isolation_source="human feces" /host="Homo sapiens" /db_xref="taxon:1117749" /country="Japan:Tokyo" /collection_date="1975-03" CDS <1..2428 /codon_start=2 /product="polyprotein" /protein_id="BAV24787.1" /translation="FSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDKYYEEVAIA RATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRNPDDFKPKGKLWA DDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHVIPQGTQEFFGVS IKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLIKRPTGELMPLAARM GTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVHTA AARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKTKFWRSSTAPL PPGTYEPAYLGGKDPRIKGGPSLQQVMRDQLKPFTEPRGKQPKPSVLEAAKRTIINVL EQTIDPPQKWTFAQACASLDKTTSSGHPHHIRKNECWNGDSFTGKLADQASKANLMFE EGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGGLMDELKAHC VTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRAILAAALEIMVKFSPE PHLAQIVAEDLLSPSVMDVGDFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTD LSPDIVQANSLFSFYGDDEIVSTDIKLDPGKLTAKLKEYGLKPTRPDKTEGPLIISED LNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPFETMIPHSQRPTQLMS LLGEAALHGPAFYSKISKLVITELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLA PSFVNEDGVE" gene 2409..4028 /gene="VP1" CDS 2409..4028 /gene="VP1" /codon_start=1 /product="capsid protein" /protein_id="BAV24788.1" /translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNIIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLSRMYNGYAGG FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQAHDSTLKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMSNSRFPIPLEKLYTGPSSAFVVQPQNGRCTTDGVLLGTT QLSAVNICNFLGDVTRVGTSHDYTMNLVSQNWDNYDPTEEIPAPLGTPDFVGKIQGLL TQTTRADRSTPAHKATVSTGSVHFTPKLGSVQFTTDTNNDFQTGQNTKFTPVGVIQDS DHHQNEPQQWVLPNYSGTTGHNVHLAPAVAPTFPGEQLLFFRVTMPGCSGYPNMNLDC LLPQEWVLHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYITVAHTGPYDLVI PPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" gene 4028..4834 /gene="VP2" CDS 4028..4834 /gene="VP2" /codon_start=1 /product="minor capsid protein" /protein_id="BAV24789.1" /translation="MAGPFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATQKLQQGLMKVKQAVLLEGGFSTTDAARGAIN APMTKALDWSGTRYWAPDARVTTYNAGRFSTPQPLGALPGRTNPRVPAPARSSPSSFS NAPTATSVYSNQTVSTRLGSSAGSGAGVSSLPSTARTRSWVEDQNRNLSPFMRGALNT SFVTPPSSRSSNQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 cttctcgagt aaaggtctca gtgatgagga gtacgacgag tacaaaagaa tcagggagga 61 aagaaacggc aagtactcta tagaggagta cctccaagac agagacaagt attatgagga 121 ggttgccatc gccagggcga ctgaagagga tttctgtgaa gaggaagagg ccaagatccg 181 acagagaatc tttagaccaa caaggaaaca acgcaaggag gagagggctt ctctcggtct 241 agtcacaggc tctgagatca ggaaaagaaa cccagatgac ttcaaaccca agggaaagtt 301 gtgggccgat gacgacagaa gtgtcgatta caacgagaag ctcagttttg aagccccacc 361 aagcatctgg tcaaggatag tcaactttgg ttcgggttgg ggtttctggg tttcccccag 421 tctgttcata acatcaactc atgttatacc ccagggcaca caggagttct tcggagtgtc 481 catcaagcaa atccagatac acaaatcagg cgaattctgc cgcctgaggt tcccaaaacc 541 aatcaggacc gatgtgacag gcatgatctt agaggagggt gcccccgaag gcaccgtggc 601 cacactactc atcaagagac caactggtga gctcatgcct ttagcagcca ggatgggcac 661 tcatgcaacc atgaagatcc aaggtcgcac tgttggaggc caaatgggta tgctcctgac 721 agggtccaat gccaaaagta tggacctggg caccacacct ggcgactgtg gttgtcccta 781 catttacaag agagggaacg actacgtggt catcggggtt cacacggctg ctgcccgagg 841 agggaacact gtcatatgtg ccacccaggg aagtgaaggt gaggccacac ttgagggcgg 901 tgacagcaaa ggcacctact gtggcgctcc gatcctaggt ccaggaagtg ccccaaagct 961 cagcaccaaa accaaattct ggagatcatc cacagcacca ctcccacctg gcacctatga 1021 accagcctac ctcggtggta aggaccccag aatcaagggt ggcccctcac tacaacaagt 1081 tatgagggac cagttgaaac cattcacgga accaagaggc aaacaaccaa agccaagtgt 1141 gttggaagct gccaagagaa ccataattaa cgtccttgaa caaacaatag acccacctca 1201 aaaatggacg tttgcgcaag cttgcgcgtc tcttgacaag accacctcca gtggtcatcc 1261 acaccacata cggaagaatg aatgctggaa tggagattcc ttcacaggca agttggcaga 1321 tcaggcctca aaggccaact tgatgtttga ggaggggaag aacatgactc cagtttatac 1381 aggtgccctc aaggatgagt tggtcaaaac tgacaagata tatggcaaga ttaagaagag 1441 actactttgg ggatcggacc tggcaaccat gatccggtgt gcccgggcgt tcgggggcct 1501 aatggatgag ctcaaggccc actgtgtcac acttcctgtt agagttggta tgaacatgaa 1561 tgaggatggc cccatcatct ttgaaaagca ttccaggtat aggtatcact atgatgctga 1621 ctactctaga tgggactcaa cacaacaaag agctatattg gctgcagccc tagagatcat 1681 ggtcaagttc tccccagagc cacacttagc ccagatagtt gcagaagacc ttctatcccc 1741 cagcgtgatg gacgtgggtg attttaagat ttcaatcaac gagggcctcc cctctggggt 1801 gccttgcact tcacaatgga actctatcgc ccactggctc ctcaccctct gtgctctctc 1861 tgaagtcacg gatctctccc ctgacatcgt tcaggccaac tctctcttct ctttctatgg 1921 tgatgatgaa attgtgagca cagatataaa attggaccca ggaaaactaa cggcaaagct 1981 aaaggaatac ggactgaaac caacccgccc tgacaagact gaaggacccc taatcatttc 2041 tgaggatcta aatggtttaa ccttcctgcg aaggactgta acccgtgatc cagctggttg 2101 gtttggtaaa ttggaacaaa gctcaatact caggcagatg tactggacca ggggccccaa 2161 ccatgaggac ccatttgaaa caatgatacc acattcccaa aggcccacgc agttgatgtc 2221 tttgctgggt gaggctgcac tgcacggccc agcattctac agcaagatca gtaaactagt 2281 catcacagag ttaaaggaag gtggcatgga tttttacgtg cccagacaag agccgatgtt 2341 caggtggatg agattctcag acctgagcac gtgggagggc gatcgcaatc tggctcccag 2401 ttttgtgaat gaagatggcg tcgagtgacg ccaacccatc tgatgggtcc gcagccaacc 2461 tcgtcccaga ggtcaacaat gaggttatgg ctttggagcc tgttgttggt gccgccattg 2521 cagcacctgt ggcaggccaa caaaatataa ttgacccctg gattagaaat aattttgtac 2581 aagcccctgg tggagagttt acagtgtccc ctagaaacgc tccaggtgag atactatgga 2641 gcgcgccctt gggccctgat ttgaacccct atctttctca cctgtccaga atgtacaatg 2701 gttatgcagg tggttttgaa gtgcaagtga tcctcgcagg gaacgcgttc accgccggga 2761 aagtcatatt tgcagcagtt ccaccaaatt ttccaactga aggtctaagc cccagtcagg 2821 ttactatgtt cccccatata attgtagatg ttaggcaatt ggaacctgta ttgatccccc 2881 tacctgatgt taggaataat ttctatcatt ataatcaagc acatgattct accctcaaat 2941 tgatagcaat gttgtacaca ccactcagag ctaataatgc cggagatgat gtctttacag 3001 tttcttgtcg agtcctcacg agaccatccc ccgattttga ttttatattc ctggtgccac 3061 ccacagttga atcaagaact aaaccattta ctgtcccaat cttaactgtt gaggaaatgt 3121 ccaattcaag attccccatt cctttggaaa agctgtacac gggtcctagc agtgcttttg 3181 ttgtccaacc acaaaatggc agatgcacga ctgatggcgt gctcttaggc actactcagc 3241 tgtcagctgt caatatctgc aacttcttgg gggatgtcac ccgtgttggg accagccatg 3301 attatacaat gaatttagtg tcccaaaatt gggacaatta tgatccaaca gaagaaattc 3361 cagctcccct gggaacaccc gactttgtgg gaaaaataca aggtttgctc acccaaacca 3421 caagagcgga caggtcgacc cccgcccaca aagctacagt gagcactggg agtgtccact 3481 tcactccaaa gctgggtagt gttcaattca ccactgatac gaacaatgat ttccaaactg 3541 gccaaaacac aaaatttacc ccagttggtg tcatccaaga cagtgatcac catcagaatg 3601 aaccccaaca atgggtactc ccaaattact caggtacaac tggtcacaat gtgcatctgg 3661 cccctgctgt tgcccccact ttcccgggtg agcagcttct tttctttagg gtcactatgc 3721 ccgggtgtag cgggtacccc aacatgaatt tggactgcct gctcccccag gagtgggtgc 3781 tgcactttta ccaggaagca gccccagcac aatccgatgt ggccctgctg agatttgtga 3841 atccagacac aggtagggtt ctgtttgagt gcaaactcca taagtcaggc tatatcacag 3901 tggctcatac tggcccgtat gatttggtta tcccccccaa tggttacttc agatttgatt 3961 cttgggtcaa ccagttctac acactcgccc ccatgggaaa tggaacgggg cgcaggcgtg 4021 cattataatg gctggacctt tctttgctgg attggcatct gatgtcctcg gttctggact 4081 tggttctcta atcaatgctg gagctggagc catcaatcaa aaagttgaat ttgaaaacaa 4141 tagaaaattg caacaagctt cttttcaatt cagtagtaat ctgcaacagg cttccttcca 4201 acatgataag gagatgctcc aagcacaaat tgaggctact caaaaattgc aacaaggttt 4261 gatgaaggtc aaacaggcag tgctcctaga gggtgggttt tccacaacag atgcggcccg 4321 tggggcaatc aacgccccca tgacaaaggc tctggactgg agcggaacaa ggtactgggc 4381 ccctgatgcc agggtcacaa catacaatgc aggccgcttc tccacccctc agcctttggg 4441 ggcattacct ggaagaacca atcctagggt ccctgcacct gctcggagct ctcccagttc 4501 attttccaat gctcctactg ctacttctgt gtattccaat caaactgttt caacgagact 4561 aggttcttca gctggttctg gtgccggtgt ctcgagtctc ccgtcaactg caaggactag 4621 gagctgggtt gaggaccaaa acagaaattt gtcgcctttc atgagggggg ctctcaacac 4681 atcatttgtc acccctccat ctagtagatc ctccaaccaa ggcacagtct caaccgtgcc 4741 taaagagatt ttggactcct ggactggcgc ttttaacacg cgcaggcagc ctctcttcgc 4801 acacattcgt aagcgagggg agtcacgggt gtaatgtgaa aagacaaaat tgattattct 4861 tcttttcctt agttgccttt t //