Typing tool
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Typing tool
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Complete norovirus genomes
| AB684675 | GII.4 | |
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| GII.P39 |
ORF1: 1..2428
ORF2: 2409..4028
ORF3: 4028..4834
LOCUS AB684675 4881 bp RNA linear VRL 31-MAR-2017
DEFINITION Norovirus Hu/GII/21-5/Tokyo/1975/JPN genes for polyprotein, capsid
protein, minor capsid protein, partial and complete cds.
ACCESSION AB684675
VERSION AB684675.1
KEYWORDS .
SOURCE Norovirus Hu/GII/21-5/Tokyo/1975/JPN
ORGANISM Norovirus Hu/GII/21-5/Tokyo/1975/JPN
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Mori,K., Chu,P.Y., Motomura,K., Somura,Y., Nagano,M., Kimoto,K.,
Akiba,T., Kai,A. and Sadamasu,K.
TITLE Genomic analysis of the evolutionary lineage of Norovirus GII.4
from archival specimens during 1975-1987 in Tokyo
JOURNAL J. Med. Virol. 89 (2), 363-367 (2017)
PUBMED 27380721
REMARK DOI:10.1002/jmv.24624
REFERENCE 2
AUTHORS Mori,K., Nagano,M., Kimoto,K., Somura,Y., Akiba,T., Hayashi,Y.,
Sadamasu,K. and Kai,A.
TITLE Detection of Enteric Viruses in Fecal Specimens from Nonbacterial
Foodborne Gastroenteritis Outbreaks in Tokyo, Japan between 1966
and 1983
JOURNAL Jpn. J. Infect. Dis. 70 (2), 143-151 (2017)
PUBMED 27357976
REMARK DOI:10.7883/yoken.JJID.2015.456
REFERENCE 3 (bases 1 to 4881)
AUTHORS Mori,K., Nagano,M., Akiba,T., Hayashi,Y. and Kai,A.
TITLE Direct Submission
JOURNAL Submitted (24-NOV-2011) Contact:Kohji Mori Tokyo Metropolitan
Institute of Public Health, Department of Microbiology; 3-24-1
Hyakunin-cho, Shinjuku, Tokyo 169-0073, Japan
FEATURES Location/Qualifiers
source 1..4881
/organism="Norovirus Hu/GII/21-5/Tokyo/1975/JPN"
/mol_type="genomic RNA"
/strain="Hu/GII/21-5/Tokyo/1975/JPN"
/isolation_source="human feces"
/host="Homo sapiens"
/db_xref="taxon:1117749"
/geo_loc_name="Japan:Tokyo"
/collection_date="1975-03"
CDS <1..2428
/codon_start=2
/product="polyprotein"
/protein_id="BAV24787.1"
/translation="FSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDKYYEEVAIA
RATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRNPDDFKPKGKLWA
DDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHVIPQGTQEFFGVS
IKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLIKRPTGELMPLAARM
GTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVHTA
AARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKTKFWRSSTAPL
PPGTYEPAYLGGKDPRIKGGPSLQQVMRDQLKPFTEPRGKQPKPSVLEAAKRTIINVL
EQTIDPPQKWTFAQACASLDKTTSSGHPHHIRKNECWNGDSFTGKLADQASKANLMFE
EGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGGLMDELKAHC
VTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRAILAAALEIMVKFSPE
PHLAQIVAEDLLSPSVMDVGDFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTD
LSPDIVQANSLFSFYGDDEIVSTDIKLDPGKLTAKLKEYGLKPTRPDKTEGPLIISED
LNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPFETMIPHSQRPTQLMS
LLGEAALHGPAFYSKISKLVITELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLA
PSFVNEDGVE"
gene 2409..4028
/gene="VP1"
CDS 2409..4028
/gene="VP1"
/codon_start=1
/product="capsid protein"
/protein_id="BAV24788.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNIIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLSRMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQAHDSTLKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMSNSRFPIPLEKLYTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSAVNICNFLGDVTRVGTSHDYTMNLVSQNWDNYDPTEEIPAPLGTPDFVGKIQGLL
TQTTRADRSTPAHKATVSTGSVHFTPKLGSVQFTTDTNNDFQTGQNTKFTPVGVIQDS
DHHQNEPQQWVLPNYSGTTGHNVHLAPAVAPTFPGEQLLFFRVTMPGCSGYPNMNLDC
LLPQEWVLHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYITVAHTGPYDLVI
PPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
gene 4028..4834
/gene="VP2"
CDS 4028..4834
/gene="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="BAV24789.1"
/translation="MAGPFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATQKLQQGLMKVKQAVLLEGGFSTTDAARGAIN
APMTKALDWSGTRYWAPDARVTTYNAGRFSTPQPLGALPGRTNPRVPAPARSSPSSFS
NAPTATSVYSNQTVSTRLGSSAGSGAGVSSLPSTARTRSWVEDQNRNLSPFMRGALNT
SFVTPPSSRSSNQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 cttctcgagt aaaggtctca gtgatgagga gtacgacgag tacaaaagaa tcagggagga
61 aagaaacggc aagtactcta tagaggagta cctccaagac agagacaagt attatgagga
121 ggttgccatc gccagggcga ctgaagagga tttctgtgaa gaggaagagg ccaagatccg
181 acagagaatc tttagaccaa caaggaaaca acgcaaggag gagagggctt ctctcggtct
241 agtcacaggc tctgagatca ggaaaagaaa cccagatgac ttcaaaccca agggaaagtt
301 gtgggccgat gacgacagaa gtgtcgatta caacgagaag ctcagttttg aagccccacc
361 aagcatctgg tcaaggatag tcaactttgg ttcgggttgg ggtttctggg tttcccccag
421 tctgttcata acatcaactc atgttatacc ccagggcaca caggagttct tcggagtgtc
481 catcaagcaa atccagatac acaaatcagg cgaattctgc cgcctgaggt tcccaaaacc
541 aatcaggacc gatgtgacag gcatgatctt agaggagggt gcccccgaag gcaccgtggc
601 cacactactc atcaagagac caactggtga gctcatgcct ttagcagcca ggatgggcac
661 tcatgcaacc atgaagatcc aaggtcgcac tgttggaggc caaatgggta tgctcctgac
721 agggtccaat gccaaaagta tggacctggg caccacacct ggcgactgtg gttgtcccta
781 catttacaag agagggaacg actacgtggt catcggggtt cacacggctg ctgcccgagg
841 agggaacact gtcatatgtg ccacccaggg aagtgaaggt gaggccacac ttgagggcgg
901 tgacagcaaa ggcacctact gtggcgctcc gatcctaggt ccaggaagtg ccccaaagct
961 cagcaccaaa accaaattct ggagatcatc cacagcacca ctcccacctg gcacctatga
1021 accagcctac ctcggtggta aggaccccag aatcaagggt ggcccctcac tacaacaagt
1081 tatgagggac cagttgaaac cattcacgga accaagaggc aaacaaccaa agccaagtgt
1141 gttggaagct gccaagagaa ccataattaa cgtccttgaa caaacaatag acccacctca
1201 aaaatggacg tttgcgcaag cttgcgcgtc tcttgacaag accacctcca gtggtcatcc
1261 acaccacata cggaagaatg aatgctggaa tggagattcc ttcacaggca agttggcaga
1321 tcaggcctca aaggccaact tgatgtttga ggaggggaag aacatgactc cagtttatac
1381 aggtgccctc aaggatgagt tggtcaaaac tgacaagata tatggcaaga ttaagaagag
1441 actactttgg ggatcggacc tggcaaccat gatccggtgt gcccgggcgt tcgggggcct
1501 aatggatgag ctcaaggccc actgtgtcac acttcctgtt agagttggta tgaacatgaa
1561 tgaggatggc cccatcatct ttgaaaagca ttccaggtat aggtatcact atgatgctga
1621 ctactctaga tgggactcaa cacaacaaag agctatattg gctgcagccc tagagatcat
1681 ggtcaagttc tccccagagc cacacttagc ccagatagtt gcagaagacc ttctatcccc
1741 cagcgtgatg gacgtgggtg attttaagat ttcaatcaac gagggcctcc cctctggggt
1801 gccttgcact tcacaatgga actctatcgc ccactggctc ctcaccctct gtgctctctc
1861 tgaagtcacg gatctctccc ctgacatcgt tcaggccaac tctctcttct ctttctatgg
1921 tgatgatgaa attgtgagca cagatataaa attggaccca ggaaaactaa cggcaaagct
1981 aaaggaatac ggactgaaac caacccgccc tgacaagact gaaggacccc taatcatttc
2041 tgaggatcta aatggtttaa ccttcctgcg aaggactgta acccgtgatc cagctggttg
2101 gtttggtaaa ttggaacaaa gctcaatact caggcagatg tactggacca ggggccccaa
2161 ccatgaggac ccatttgaaa caatgatacc acattcccaa aggcccacgc agttgatgtc
2221 tttgctgggt gaggctgcac tgcacggccc agcattctac agcaagatca gtaaactagt
2281 catcacagag ttaaaggaag gtggcatgga tttttacgtg cccagacaag agccgatgtt
2341 caggtggatg agattctcag acctgagcac gtgggagggc gatcgcaatc tggctcccag
2401 ttttgtgaat gaagatggcg tcgagtgacg ccaacccatc tgatgggtcc gcagccaacc
2461 tcgtcccaga ggtcaacaat gaggttatgg ctttggagcc tgttgttggt gccgccattg
2521 cagcacctgt ggcaggccaa caaaatataa ttgacccctg gattagaaat aattttgtac
2581 aagcccctgg tggagagttt acagtgtccc ctagaaacgc tccaggtgag atactatgga
2641 gcgcgccctt gggccctgat ttgaacccct atctttctca cctgtccaga atgtacaatg
2701 gttatgcagg tggttttgaa gtgcaagtga tcctcgcagg gaacgcgttc accgccggga
2761 aagtcatatt tgcagcagtt ccaccaaatt ttccaactga aggtctaagc cccagtcagg
2821 ttactatgtt cccccatata attgtagatg ttaggcaatt ggaacctgta ttgatccccc
2881 tacctgatgt taggaataat ttctatcatt ataatcaagc acatgattct accctcaaat
2941 tgatagcaat gttgtacaca ccactcagag ctaataatgc cggagatgat gtctttacag
3001 tttcttgtcg agtcctcacg agaccatccc ccgattttga ttttatattc ctggtgccac
3061 ccacagttga atcaagaact aaaccattta ctgtcccaat cttaactgtt gaggaaatgt
3121 ccaattcaag attccccatt cctttggaaa agctgtacac gggtcctagc agtgcttttg
3181 ttgtccaacc acaaaatggc agatgcacga ctgatggcgt gctcttaggc actactcagc
3241 tgtcagctgt caatatctgc aacttcttgg gggatgtcac ccgtgttggg accagccatg
3301 attatacaat gaatttagtg tcccaaaatt gggacaatta tgatccaaca gaagaaattc
3361 cagctcccct gggaacaccc gactttgtgg gaaaaataca aggtttgctc acccaaacca
3421 caagagcgga caggtcgacc cccgcccaca aagctacagt gagcactggg agtgtccact
3481 tcactccaaa gctgggtagt gttcaattca ccactgatac gaacaatgat ttccaaactg
3541 gccaaaacac aaaatttacc ccagttggtg tcatccaaga cagtgatcac catcagaatg
3601 aaccccaaca atgggtactc ccaaattact caggtacaac tggtcacaat gtgcatctgg
3661 cccctgctgt tgcccccact ttcccgggtg agcagcttct tttctttagg gtcactatgc
3721 ccgggtgtag cgggtacccc aacatgaatt tggactgcct gctcccccag gagtgggtgc
3781 tgcactttta ccaggaagca gccccagcac aatccgatgt ggccctgctg agatttgtga
3841 atccagacac aggtagggtt ctgtttgagt gcaaactcca taagtcaggc tatatcacag
3901 tggctcatac tggcccgtat gatttggtta tcccccccaa tggttacttc agatttgatt
3961 cttgggtcaa ccagttctac acactcgccc ccatgggaaa tggaacgggg cgcaggcgtg
4021 cattataatg gctggacctt tctttgctgg attggcatct gatgtcctcg gttctggact
4081 tggttctcta atcaatgctg gagctggagc catcaatcaa aaagttgaat ttgaaaacaa
4141 tagaaaattg caacaagctt cttttcaatt cagtagtaat ctgcaacagg cttccttcca
4201 acatgataag gagatgctcc aagcacaaat tgaggctact caaaaattgc aacaaggttt
4261 gatgaaggtc aaacaggcag tgctcctaga gggtgggttt tccacaacag atgcggcccg
4321 tggggcaatc aacgccccca tgacaaaggc tctggactgg agcggaacaa ggtactgggc
4381 ccctgatgcc agggtcacaa catacaatgc aggccgcttc tccacccctc agcctttggg
4441 ggcattacct ggaagaacca atcctagggt ccctgcacct gctcggagct ctcccagttc
4501 attttccaat gctcctactg ctacttctgt gtattccaat caaactgttt caacgagact
4561 aggttcttca gctggttctg gtgccggtgt ctcgagtctc ccgtcaactg caaggactag
4621 gagctgggtt gaggaccaaa acagaaattt gtcgcctttc atgagggggg ctctcaacac
4681 atcatttgtc acccctccat ctagtagatc ctccaaccaa ggcacagtct caaccgtgcc
4741 taaagagatt ttggactcct ggactggcgc ttttaacacg cgcaggcagc ctctcttcgc
4801 acacattcgt aagcgagggg agtcacgggt gtaatgtgaa aagacaaaat tgattattct
4861 tcttttcctt agttgccttt t
//